EWM24761.1, cds5909 (CDS) Nannochloropsis gaditana

Overview
NameEWM24761.1
Unique Namecds5909
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:107728..109350 +

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Properties
Property NameValue
Start range107728
Start range.
Protein idEWM24761.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100612g6.7315.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:107728..109350 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24761.1 vs. NCBI_GenBank
Match: gi|585106321|gb|EWM24761.1| (hypothetical protein Naga_100612g6, partial [Nannochloropsis gaditana])

HSP 1 Score: 1041.57 bits (2692), Expect = 0.000e+0
Identity = 540/540 (100.00%), Postives = 540/540 (100.00%), Query Frame = 0 
Query:    1 RGGSAEKGLLQLRIKARREAGGKPPLHSPRLPPGPPPPVAEPPEHQPWNALPPMPQPISLLPSLQPSIQPLPAAGKEDEKDGKESLGEGTLEKGPTEGKKARKQSQQGAQTHDTKPSPPPSTATSLPTWPAPPLPGYPPPSAAPPAGSSTLPPPPTDLAGRHWTPQEAHAYYYPQWHSATTHPPAPPASQTQPQQQDKNAGPSSYSFPPPPHPSYPPYPLPPPPGHGVQGSYPLYPPPFSSSYLPPPPPPTSGSEAADKNAASTGTSLPPSSSGHTTCDASSNNSSNNPSPALGAAAEGAHPTSSAPQQDLAVGVMLSVASDDGGAEGGMEDGMEEGAEGHVPSQYPGVHWDREKKTWSAWLTLPGGEYQCLGESFRDEHAALTAQTEAIANYYRTLGMIPPPPPPALAAAMAPAPAVDGTEGGKEGKEGGVEAGMEVVGEEGLPTPAAAPAVAAAEVEGAWEEEEGRKEEEREKPKELETEGGGPGHRKQQPSEGTAAVVSALLQVGKSAAGEEDELLGLGVAAAAGAGTSSASPSPGR 540
            RGGSAEKGLLQLRIKARREAGGKPPLHSPRLPPGPPPPVAEPPEHQPWNALPPMPQPISLLPSLQPSIQPLPAAGKEDEKDGKESLGEGTLEKGPTEGKKARKQSQQGAQTHDTKPSPPPSTATSLPTWPAPPLPGYPPPSAAPPAGSSTLPPPPTDLAGRHWTPQEAHAYYYPQWHSATTHPPAPPASQTQPQQQDKNAGPSSYSFPPPPHPSYPPYPLPPPPGHGVQGSYPLYPPPFSSSYLPPPPPPTSGSEAADKNAASTGTSLPPSSSGHTTCDASSNNSSNNPSPALGAAAEGAHPTSSAPQQDLAVGVMLSVASDDGGAEGGMEDGMEEGAEGHVPSQYPGVHWDREKKTWSAWLTLPGGEYQCLGESFRDEHAALTAQTEAIANYYRTLGMIPPPPPPALAAAMAPAPAVDGTEGGKEGKEGGVEAGMEVVGEEGLPTPAAAPAVAAAEVEGAWEEEEGRKEEEREKPKELETEGGGPGHRKQQPSEGTAAVVSALLQVGKSAAGEEDELLGLGVAAAAGAGTSSASPSPGR
Sbjct:    1 RGGSAEKGLLQLRIKARREAGGKPPLHSPRLPPGPPPPVAEPPEHQPWNALPPMPQPISLLPSLQPSIQPLPAAGKEDEKDGKESLGEGTLEKGPTEGKKARKQSQQGAQTHDTKPSPPPSTATSLPTWPAPPLPGYPPPSAAPPAGSSTLPPPPTDLAGRHWTPQEAHAYYYPQWHSATTHPPAPPASQTQPQQQDKNAGPSSYSFPPPPHPSYPPYPLPPPPGHGVQGSYPLYPPPFSSSYLPPPPPPTSGSEAADKNAASTGTSLPPSSSGHTTCDASSNNSSNNPSPALGAAAEGAHPTSSAPQQDLAVGVMLSVASDDGGAEGGMEDGMEEGAEGHVPSQYPGVHWDREKKTWSAWLTLPGGEYQCLGESFRDEHAALTAQTEAIANYYRTLGMIPPPPPPALAAAMAPAPAVDGTEGGKEGKEGGVEAGMEVVGEEGLPTPAAAPAVAAAEVEGAWEEEEGRKEEEREKPKELETEGGGPGHRKQQPSEGTAAVVSALLQVGKSAAGEEDELLGLGVAAAAGAGTSSASPSPGR 540
[Close]
BLAST of EWM24761.1 vs. NCBI_GenBank
Match: gi|553181011|ref|XP_005853498.1| (hypothetical protein NGA_0504300 [Nannochloropsis gaditana CCMP526] >gi|422295562|gb|EKU22861.1| hypothetical protein NGA_0504300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 238.81 bits (608), Expect = 1.547e-73
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 
Query:  412 MAPAPAVDGTEGGKEGKEGGVEAGMEVVGEEGLPTPAAAPAVAAAEVEGAWEEEEGRKEEEREKPKELETEGGGPGHRKQQPSEGTAAVVSALLQVGKSAAGEEDELLGLGVAAAAGAGTSSASPSPGR 540
            MAPAPAVDGTEGGKEGKEGGVEAGMEVVGEEGLPTPAAAPAVAAAEVEGAWEEEEGRKEEEREKPKELETEGGGPGHRKQQPSEGTAAVVSALLQVGKSAAGEEDELLGLGVAAAAGAGTSSASPSPGR
Sbjct:    1 MAPAPAVDGTEGGKEGKEGGVEAGMEVVGEEGLPTPAAAPAVAAAEVEGAWEEEEGRKEEEREKPKELETEGGGPGHRKQQPSEGTAAVVSALLQVGKSAAGEEDELLGLGVAAAAGAGTSSASPSPGR 129
The following BLAST results are available for this feature:
BLAST of EWM24761.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106321|gb|EWM24761.1|0.000e+0100.00hypothetical protein Naga_100612g6, partial [Nanno... [more]
gi|553181011|ref|XP_005853498.1|1.547e-73100.00hypothetical protein NGA_0504300 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5924rna5924Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications