EWM24767.1, cds5906 (CDS) Nannochloropsis gaditana

Overview
NameEWM24767.1
Unique Namecds5906
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:98561..98740 +
Alignment locationCM002467.1:98816..99034 +
Alignment locationCM002467.1:99257..99744 +

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Properties
Property NameValue
End range.
End range99744
Protein idEWM24767.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100255g8.4986.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:98561..98740 +
CM002467.1supercontigCM002467.1:98816..99034 +
CM002467.1supercontigCM002467.1:99257..99744 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM24767.1 vs. NCBI_GenBank
Match: gi|585106332|gb|EWM24767.1| (hypothetical protein Naga_100255g8, partial [Nannochloropsis gaditana])

HSP 1 Score: 568.54 bits (1464), Expect = 0.000e+0
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
Query:    1 MKAVATQPVHRPLLFCRRFLVFTVVLSLTVLTCISPSYNAFDLVPALRTATSRDKGIKTRALPPPSPAPPFLSQPSLLLRFATPSSPPSPPSPHEAKRRRRAMARQRRRRRHAEERAAFQNQTLHAPGLVPSQVYLSPRHKKRPPFPDLSTTPTSSSSSPSSSEEDAQDLIVLEVPACPPSLPPSPPPSLPPSPPPSLPPSPPPSSPPSPAPYRRSGDCPNVHWRAIPFPHLRQHPSFQALPPSRPPSRLADLRFFRQDSWEWRALHVGRLTTSRVGGLLGGDGGRREGGKEGGR 295
            MKAVATQPVHRPLLFCRRFLVFTVVLSLTVLTCISPSYNAFDLVPALRTATSRDKGIKTRALPPPSPAPPFLSQPSLLLRFATPSSPPSPPSPHEAKRRRRAMARQRRRRRHAEERAAFQNQTLHAPGLVPSQVYLSPRHKKRPPFPDLSTTPTSSSSSPSSSEEDAQDLIVLEVPACPPSLPPSPPPSLPPSPPPSLPPSPPPSSPPSPAPYRRSGDCPNVHWRAIPFPHLRQHPSFQALPPSRPPSRLADLRFFRQDSWEWRALHVGRLTTSRVGGLLGGDGGRREGGKEGGR
Sbjct:    1 MKAVATQPVHRPLLFCRRFLVFTVVLSLTVLTCISPSYNAFDLVPALRTATSRDKGIKTRALPPPSPAPPFLSQPSLLLRFATPSSPPSPPSPHEAKRRRRAMARQRRRRRHAEERAAFQNQTLHAPGLVPSQVYLSPRHKKRPPFPDLSTTPTSSSSSPSSSEEDAQDLIVLEVPACPPSLPPSPPPSLPPSPPPSLPPSPPPSSPPSPAPYRRSGDCPNVHWRAIPFPHLRQHPSFQALPPSRPPSRLADLRFFRQDSWEWRALHVGRLTTSRVGGLLGGDGGRREGGKEGGR 295          
BLAST of EWM24767.1 vs. NCBI_GenBank
Match: gi|553187596|ref|XP_005854642.1| (hypothetical protein NGA_0192800, partial [Nannochloropsis gaditana CCMP526] >gi|422294418|gb|EKU21718.1| hypothetical protein NGA_0192800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 155.606 bits (392), Expect = 1.599e-42
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0
Query:    1 MKAVATQPVHRPLLFCRRFLVFTVVLSLTVLTCISPSYNAFDLVPALRTATSRDKGIKTRALPPPSPAPPFLSQPSLLLRFATPSSPPSPPSPHEAKRRRRAMARQRRRRRHAEERAAFQNQTLHAPGLVPSQV 134
            MKAVATQPVHRPLLFCRRFLVFTVVLSLTVLTCISPSYNAFDLVPALRTATSRDKGIK RALPPPSPAPPFLSQPSLLLRFATPSSPPSPPSPHEAKRRRRAMARQRRRRRHAEERAAFQNQTLHAPGLVPSQV
Sbjct:    1 MKAVATQPVHRPLLFCRRFLVFTVVLSLTVLTCISPSYNAFDLVPALRTATSRDKGIKIRALPPPSPAPPFLSQPSLLLRFATPSSPPSPPSPHEAKRRRRAMARQRRRRRHAEERAAFQNQTLHAPGLVPSQV 134          

HSP 2 Score: 63.1586 bits (152), Expect = 4.744e-8
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0
Query:  133 QVYLSPRHKKRPPFPDLSTTPTSSSSSPSSSEEDAQDLIVLEVPA 177
            QVYLSPRHKKRPPFPDLSTTPTSSSSSPSSSEEDAQDLIVLEVPA
Sbjct:  207 QVYLSPRHKKRPPFPDLSTTPTSSSSSPSSSEEDAQDLIVLEVPA 251          
BLAST of EWM24767.1 vs. NCBI_GenBank
Match: gi|224008400|ref|XP_002293159.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971285|gb|EED89620.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 80.1073 bits (196), Expect = 3.425e-13
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 0
Query:  215 RSGDCPNVHWRAIPFPHLRQHPSFQALPPSRPPSRL---ADLRFFRQDSWEWRALHVGRLTTSRVGGLLG 281
            R+G+ P+VHWRAIP  HLR HPSF  LPP    S L     +R+FRQ+SW+W  LH GR TTS+    LG
Sbjct:  135 RTGNLPDVHWRAIPLTHLRSHPSFHPLPPPSTISSLPTKEHVRYFRQESWQWDYLHQGRCTTSQTAAALG 204          
The following BLAST results are available for this feature:
BLAST of EWM24767.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585106332|gb|EWM24767.1|0.000e+0100.00hypothetical protein Naga_100255g8, partial [Nanno... [more]
gi|553187596|ref|XP_005854642.1|1.599e-4299.25hypothetical protein NGA_0192800, partial [Nannoch... [more]
gi|224008400|ref|XP_002293159.1|3.425e-1354.29predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5921rna5921Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications