EWM24767.1, cds5906 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24767.1 vs. NCBI_GenBank
Match: gi|585106332|gb|EWM24767.1| (hypothetical protein Naga_100255g8, partial [Nannochloropsis gaditana]) HSP 1 Score: 568.54 bits (1464), Expect = 0.000e+0 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
Query: 1 MKAVATQPVHRPLLFCRRFLVFTVVLSLTVLTCISPSYNAFDLVPALRTATSRDKGIKTRALPPPSPAPPFLSQPSLLLRFATPSSPPSPPSPHEAKRRRRAMARQRRRRRHAEERAAFQNQTLHAPGLVPSQVYLSPRHKKRPPFPDLSTTPTSSSSSPSSSEEDAQDLIVLEVPACPPSLPPSPPPSLPPSPPPSLPPSPPPSSPPSPAPYRRSGDCPNVHWRAIPFPHLRQHPSFQALPPSRPPSRLADLRFFRQDSWEWRALHVGRLTTSRVGGLLGGDGGRREGGKEGGR 295
MKAVATQPVHRPLLFCRRFLVFTVVLSLTVLTCISPSYNAFDLVPALRTATSRDKGIKTRALPPPSPAPPFLSQPSLLLRFATPSSPPSPPSPHEAKRRRRAMARQRRRRRHAEERAAFQNQTLHAPGLVPSQVYLSPRHKKRPPFPDLSTTPTSSSSSPSSSEEDAQDLIVLEVPACPPSLPPSPPPSLPPSPPPSLPPSPPPSSPPSPAPYRRSGDCPNVHWRAIPFPHLRQHPSFQALPPSRPPSRLADLRFFRQDSWEWRALHVGRLTTSRVGGLLGGDGGRREGGKEGGR
Sbjct: 1 MKAVATQPVHRPLLFCRRFLVFTVVLSLTVLTCISPSYNAFDLVPALRTATSRDKGIKTRALPPPSPAPPFLSQPSLLLRFATPSSPPSPPSPHEAKRRRRAMARQRRRRRHAEERAAFQNQTLHAPGLVPSQVYLSPRHKKRPPFPDLSTTPTSSSSSPSSSEEDAQDLIVLEVPACPPSLPPSPPPSLPPSPPPSLPPSPPPSSPPSPAPYRRSGDCPNVHWRAIPFPHLRQHPSFQALPPSRPPSRLADLRFFRQDSWEWRALHVGRLTTSRVGGLLGGDGGRREGGKEGGR 295
BLAST of EWM24767.1 vs. NCBI_GenBank
Match: gi|553187596|ref|XP_005854642.1| (hypothetical protein NGA_0192800, partial [Nannochloropsis gaditana CCMP526] >gi|422294418|gb|EKU21718.1| hypothetical protein NGA_0192800, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 155.606 bits (392), Expect = 1.599e-42 Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0
Query: 1 MKAVATQPVHRPLLFCRRFLVFTVVLSLTVLTCISPSYNAFDLVPALRTATSRDKGIKTRALPPPSPAPPFLSQPSLLLRFATPSSPPSPPSPHEAKRRRRAMARQRRRRRHAEERAAFQNQTLHAPGLVPSQV 134
MKAVATQPVHRPLLFCRRFLVFTVVLSLTVLTCISPSYNAFDLVPALRTATSRDKGIK RALPPPSPAPPFLSQPSLLLRFATPSSPPSPPSPHEAKRRRRAMARQRRRRRHAEERAAFQNQTLHAPGLVPSQV
Sbjct: 1 MKAVATQPVHRPLLFCRRFLVFTVVLSLTVLTCISPSYNAFDLVPALRTATSRDKGIKIRALPPPSPAPPFLSQPSLLLRFATPSSPPSPPSPHEAKRRRRAMARQRRRRRHAEERAAFQNQTLHAPGLVPSQV 134 HSP 2 Score: 63.1586 bits (152), Expect = 4.744e-8 Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0
Query: 133 QVYLSPRHKKRPPFPDLSTTPTSSSSSPSSSEEDAQDLIVLEVPA 177
QVYLSPRHKKRPPFPDLSTTPTSSSSSPSSSEEDAQDLIVLEVPA
Sbjct: 207 QVYLSPRHKKRPPFPDLSTTPTSSSSSPSSSEEDAQDLIVLEVPA 251
BLAST of EWM24767.1 vs. NCBI_GenBank
Match: gi|224008400|ref|XP_002293159.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971285|gb|EED89620.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 80.1073 bits (196), Expect = 3.425e-13 Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 0
Query: 215 RSGDCPNVHWRAIPFPHLRQHPSFQALPPSRPPSRL---ADLRFFRQDSWEWRALHVGRLTTSRVGGLLG 281
R+G+ P+VHWRAIP HLR HPSF LPP S L +R+FRQ+SW+W LH GR TTS+ LG
Sbjct: 135 RTGNLPDVHWRAIPLTHLRSHPSFHPLPPPSTISSLPTKEHVRYFRQESWQWDYLHQGRCTTSQTAAALG 204 The following BLAST results are available for this feature:
BLAST of EWM24767.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|