EWM30607.1, cds59 (CDS) Nannochloropsis gaditana

Overview
NameEWM30607.1
Unique Namecds59
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:172666..172788 +
Alignment locationCM002455.1:172930..173007 +
Alignment locationCM002455.1:173116..173330 +
Alignment locationCM002455.1:173528..173579 +
Alignment locationCM002455.1:173715..173930 +
Alignment locationCM002455.1:174111..174461 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30607.1
ProductBarwin-related endoglucanase
Orig transcript idgnl|cribi|Naga_100129g3.1885.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:172666..172788 +
CM002455.1supercontigCM002455.1:172930..173007 +
CM002455.1supercontigCM002455.1:173116..173330 +
CM002455.1supercontigCM002455.1:173528..173579 +
CM002455.1supercontigCM002455.1:173715..173930 +
CM002455.1supercontigCM002455.1:174111..174461 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR009009RlpA-like_DPBB
Homology
BLAST of EWM30607.1 vs. NCBI_GenBank
Match: gi|585113279|gb|EWM30607.1| (Barwin-related endoglucanase [Nannochloropsis gaditana])

HSP 1 Score: 709.909 bits (1831), Expect = 0.000e+0
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0
Query:    1 MRLSGLHIGYFCAVSAVQLGSIALAEGAGSDEWFIKPIRGRSTYYGNYGGGGACGLDQPDGSAIPAEIQGIDFTVALDQPQFDVGGCGMCILLNGTGVGAGGNPVNGIYTAFVNNLCPECEYGHLDFALPGDGSWEIEWKAIPCDVRDHKIRFVFMGSNDFYLKVSTQASRFPTKALRLKMGGEWREGWPVHGSYFEFRDGAPFTFPMEVEITSVFGEVLTDWIESLQGGPSTIQYTLQAEELTSEMTRGATWEGESGLDDDLEGSSTTPDENLMTKERIGEGLVPRKLKESRRDVGGEPTRRGAREANESDASNKQSTSQIGTANLVSSQSRLRGIKASNEHQ 344
            MRLSGLHIGYFCAVSAVQLGSIALAEGAGSDEWFIKPIRGRSTYYGNYGGGGACGLDQPDGSAIPAEIQGIDFTVALDQPQFDVGGCGMCILLNGTGVGAGGNPVNGIYTAFVNNLCPECEYGHLDFALPGDGSWEIEWKAIPCDVRDHKIRFVFMGSNDFYLKVSTQASRFPTKALRLKMGGEWREGWPVHGSYFEFRDGAPFTFPMEVEITSVFGEVLTDWIESLQGGPSTIQYTLQAEELTSEMTRGATWEGESGLDDDLEGSSTTPDENLMTKERIGEGLVPRKLKESRRDVGGEPTRRGAREANESDASNKQSTSQIGTANLVSSQSRLRGIKASNEHQ
Sbjct:    1 MRLSGLHIGYFCAVSAVQLGSIALAEGAGSDEWFIKPIRGRSTYYGNYGGGGACGLDQPDGSAIPAEIQGIDFTVALDQPQFDVGGCGMCILLNGTGVGAGGNPVNGIYTAFVNNLCPECEYGHLDFALPGDGSWEIEWKAIPCDVRDHKIRFVFMGSNDFYLKVSTQASRFPTKALRLKMGGEWREGWPVHGSYFEFRDGAPFTFPMEVEITSVFGEVLTDWIESLQGGPSTIQYTLQAEELTSEMTRGATWEGESGLDDDLEGSSTTPDENLMTKERIGEGLVPRKLKESRRDVGGEPTRRGAREANESDASNKQSTSQIGTANLVSSQSRLRGIKASNEHQ 344          
BLAST of EWM30607.1 vs. NCBI_GenBank
Match: gi|676439295|ref|XP_009048807.1| (hypothetical protein LOTGIDRAFT_157978 [Lottia gigantea] >gi|556112036|gb|ESP00688.1| hypothetical protein LOTGIDRAFT_157978 [Lottia gigantea])

HSP 1 Score: 134.806 bits (338), Expect = 5.267e-34
Identity = 81/210 (38.57%), Postives = 116/210 (55.24%), Query Frame = 0
Query:   39 RGRSTYYGNYGGGGACGLDQPDGSAIPAEIQGI--DFTVALDQPQFDVGG--CGMCILLNGTGVGAGGNPVNGIYTAFVNNLCPECEYGHLDFALPGDGSWEIEWKAIPCDVRDHKIRFVFMGSNDFYLKVSTQASRFPTKALRLKMGGEWREGWPVHGSYFEFRDGAPF-TFPMEVEITSVFGEVLTDWIESLQG-----GPSTIQYTL 238
             G  TYYG    GG C  D P  S  PA +  I  +F VAL++PQF +G   CGMC  +N  G G G NP+ G +  FV +LCPEC+ G LDFA+ GDG W+IE +A+ C V + K+ + F GSN +Y+K+  + +R P  A+++K  G W+        ++   D  P  T  ++V+IT+  GE + D I  L       G   +Q+ L
Sbjct:   34 NGDGTYYGP-TDGGTCQYDPP--SKPPAGLNPIIRNF-VALNKPQF-LGSYSCGMCFKVNSNGQGLGTNPIKGHFVVFVADLCPECKTGSLDFAINGDGRWKIEIQAVQCPVGNTKLEYKFQGSNSYYIKLQIRNARIPAVAVKIKQNGSWKAMSHSADGFWILSDQKPVPTHNIDVQITAANGETVHDTIPELVNAKVLHGSQKVQFAL 238          
BLAST of EWM30607.1 vs. NCBI_GenBank
Match: gi|1207919096|ref|XP_021348420.1| (uncharacterized protein LOC110447205 [Mizuhopecten yessoensis] >gi|1205905811|gb|OWF52840.1| Expansin-YoaJ [Mizuhopecten yessoensis])

HSP 1 Score: 129.028 bits (323), Expect = 7.568e-32
Identity = 78/223 (34.98%), Postives = 110/223 (49.33%), Query Frame = 0
Query:   16 AVQLGSIALAEGAGSDE---WFIKPIRGRSTYYGNYGGGGACGLDQPDGSAIPAEIQGIDFTVALDQPQF-DVGGCGMCILLNGTGVGAGGNPVNGIYTAFVNNLCPECEYGHLDFALPGDGSWEIEWKAIPCDVRDHKIRFVFMGSNDFYLKVSTQASRFPTKALRLKMGGEWREGWPVHGSYFEFRDG---------APFTFPMEVEITSVFGEVLTDWIE 225
             + L  + LA G+   +    +    RG  TYYG  G  G C    PD   + A+   I   VAL+ PQF     CGMC  +NGTG G G +P+NG +  FV +LCPEC  G +DFA  GDG W I  +AI C V +  I + F GSND+YLK+  + +R P   +      E R+    + S+    DG          P  +P+ + +T+  G+ + D I 
Sbjct:    6 TILLSVLTLANGSHEHDIINLYKHNFRGDGTYYG-VGSSGTCSYTPPDLPPV-AKNHAITDYVALNSPQFFGSLACGMCFTVNGTGHGLGNDPINGQHIVFVKDLCPECHAGSVDFAKNGDGRWGISIRAIQCPVGNTPIEYKFQGSNDYYLKLQVRNARIPATKV------EMRQQDNHYASFQHTTDGFWTMGAGFDKPVRYPIHLRLTAANGDTVLDTIH 220          
BLAST of EWM30607.1 vs. NCBI_GenBank
Match: gi|545372147|ref|XP_005650571.1| (hypothetical protein COCSUDRAFT_40205 [Coccomyxa subellipsoidea C-169] >gi|384252551|gb|EIE26027.1| hypothetical protein COCSUDRAFT_40205 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 132.494 bits (332), Expect = 1.024e-31
Identity = 72/213 (33.80%), Postives = 112/213 (52.58%), Query Frame = 0
Query:   39 RGRSTYYGNYGGG---GACGLDQPDGSAIPAEIQ-GIDFTVALDQPQFDVG-GCGMCILLNGTGVGAGGNPVNGI--YTAFVNNLCPECEYGHLDFALPGDGSWEIEWKAIPCDVRDHKIRFVFMGSNDFYLKVSTQASRFPTKALRLKMGGEW-------REGWPVHGSYFEFRDGAPFTFPMEVEITSVFGEVLTDWIESLQGGPSTIQYT 237
            +G  T+YG   G    G C  ++   + +      G D T+AL+  QF+ G GCG+CI   GTG G G  P +     T FVNN CPEC +G +D    GDG W++EW A+PC+V D  +R+  + S+ ++  +    +R P   + +K+ GEW          WP + ++  ++     +FPM + +TSV GE + D I S +GG    Q++
Sbjct:   37 KGEGTFYGQQDGQDAQGTCSYNENFANTVKLPWSSGTDMTIALNDAQFENGNGCGLCIKFRGTGAGLGTTPPSTTEWKTGFVNNRCPECAFGDIDMNSRGDGRWKVEWYAVPCNVADTPLRYDIVVSSYYWFSLVVSNTRVPIAGVEVKLNGEWLPLKRTVNNQWPYYNTHGPWQS----SFPMPIRVTSVTGETIEDTITSAKGGDGAKQFS 245          
BLAST of EWM30607.1 vs. NCBI_GenBank
Match: gi|908417500|ref|XP_013070046.1| (PREDICTED: expansin-YoaJ-like isoform X1 [Biomphalaria glabrata])

HSP 1 Score: 121.709 bits (304), Expect = 4.492e-29
Identity = 70/198 (35.35%), Postives = 107/198 (54.04%), Query Frame = 0
Query:   32 EWFIKPIRGRSTYYGNYGGGGACGLDQPDGSAIPAEIQGIDFTVALDQPQF-DVGGCGMCILLNGTGVGAGGNPVNGIYTAFVNNLCPECEYGHLDFALPGDGSWEIEWKAIPCDVRDHKIRFVFMGSNDFYLKVSTQASRFPTKALRLKMGGEWRE-GWPVHGSYFEFRDGAPFTFPMEVEITSVFGEVLTDWIESL 227
            + F K  +G  TYYG    G  C + +P   A  A    I   VAL++PQF +   CGMCI + G+G G G NP+ G +  +V ++CP C  G +DFAL GDG W I  +A+ C V    I++ F GSN +Y+K+  + +R P   ++++  G W+     + G +     GA    P++V +T+  G+VL D I  +
Sbjct:   30 DLFTKSYKGDGTYYGETVDG-TCQIARPLPMA--ASDPKISALVALNRPQFLNSMTCGMCIKVVGSGHGLGNNPIVGEHIVYVKDMCPVCHEGDVDFALDGDGRWNITMQAVQCPVGSSTIQYAFQGSNAWYIKLQIRNARIPITGVQIEKNGAWQTLTHSIDGYWLLSGGGAIADGPIKVRMTAANGQVLEDMIPRI 224          
BLAST of EWM30607.1 vs. NCBI_GenBank
Match: gi|762075411|ref|XP_011442014.1| (PREDICTED: uncharacterized protein LOC105338530 [Crassostrea gigas] >gi|405966040|gb|EKC31365.1| Expansin-yoaJ [Crassostrea gigas])

HSP 1 Score: 118.627 bits (296), Expect = 5.916e-28
Identity = 64/171 (37.43%), Postives = 94/171 (54.97%), Query Frame = 0
Query:   63 AIPAEIQGIDFTVALDQPQF-DVGGCGMCILLNGTGVGAGGNPVNGIYTAFVNNLCPECEYGHLDFALPGDGSWEIEWKAIPCDVRDHKIRFVFMGSNDFYLKVSTQASRFPTKALRLKM--GGEWREGWPVHGSYFEFRD---GAPFTFPMEVEITSVFGEVLTDWIESL 227
            ++P   + I+  VAL+ PQF     CGMC  ++GTG GAG +P+ G +TAFV +LCPEC  G LD A  GDG W+IE +AI C V + KI + F GSN++YLK+  + +R P   + +       W         ++ F       P  FP+ V +T+  G+ + D +  L
Sbjct:   50 SMPPVARHINKLVALNAPQFFGSLSCGMCFRVHGTGQGAGNDPITGTFTAFVKDLCPECHAGALDLAENGDGRWKIEIQAIQCPVGNGKIEYKFQGSNNWYLKLQIRNARIPATGVEMYQPKSNRWSALHHTTDGFWVFGSDPVDKPVVFPIRVRLTAANGQAIQDHVPRL 220          
BLAST of EWM30607.1 vs. NCBI_GenBank
Match: gi|919008626|ref|XP_013389060.1| (PREDICTED: uncharacterized protein LOC106157840 [Lingula anatina] >gi|919008628|ref|XP_013389061.1| PREDICTED: uncharacterized protein LOC106157840 [Lingula anatina])

HSP 1 Score: 115.546 bits (288), Expect = 1.060e-26
Identity = 71/213 (33.33%), Postives = 109/213 (51.17%), Query Frame = 0
Query:   25 AEGAGSDEWFIKPIRGRSTYYG-NYGGGG-ACGLDQPDGSAIPAEIQ--GIDFTVALDQPQFDVG-GCGMCILLNGTGVGAGGNPVNGIYTAFVNNLCPECEYGHLDFALPGDGSWEIEWKAIPCDVRDHKIRFVFMGSNDFYLKVSTQASRFPTKALRLKMGG--------EWREGWPVHGSYFEFRDGAPFTFPMEVEITSVFGEVLTDWI 224
            A+    +E + K   G  TYYG +Y      C L     S +P ++   GID T A++  QF     CG+C+ + G+G G G NP+ G Y  +V +LCP C+ G +DFAL GDG W I++ A+PC   D+ + + F  S+ +Y+K+    +R P   + L  G            +G+ +       R   P  +P+ V++TSV GEVL D +
Sbjct:   21 AQQTKLNELYQKRFFGEGTYYGQSYNQAKETCQLR----SMLPGKLSDYGIDSTAAINIEQFTGSLTCGICLRVTGSGQGLGLNPLTGTYLVYVTDLCPSCKQGDVDFALVGDGRWNIDFTAVPCPFNDN-VSYRFQDSSPWYIKIQVGNTRLPVTGMALYNGASKEYVPMMRTNDGFWIMNPSILNRYQRPIQYPLRVQLTSVRGEVLQDTV 228          
BLAST of EWM30607.1 vs. NCBI_GenBank
Match: gi|676439308|ref|XP_009048811.1| (hypothetical protein LOTGIDRAFT_157982 [Lottia gigantea] >gi|556112040|gb|ESP00692.1| hypothetical protein LOTGIDRAFT_157982 [Lottia gigantea])

HSP 1 Score: 115.161 bits (287), Expect = 1.644e-26
Identity = 65/190 (34.21%), Postives = 97/190 (51.05%), Query Frame = 0
Query:   40 GRSTYYGNYGGGGACGLDQPDGSAIPAEIQ-GIDFTVALDQPQF-DVGGCGMCILLNGTGVGAGGNPVNGIYTAFVNNLCPECEYGHLDFALPGDGSWEIEWKAIPCDVRDHKIRFVFMGSNDFYLKVSTQASRFPTKALRLKMGGEWREGWPVHGSYFEFRDGAPFTFPMEVEITSVFGEVLTDWIESL 227
            G  TYY      G C    P  S  P  +   I + VAL++PQF D   CGMC  ++  G GAG +P+ G +  FV ++CPEC  G LD A  GDG W+I  +A+ C V +  I ++  GSN +Y+K+  + +R P   +R   G +W +       ++EF  G   T P+ + + S  G  + D I  +
Sbjct:   38 GDGTYYKK-TPNGTCSYTPP--SLPPTALSPHIKYLVALNKPQFHDAMTCGMCFRVHAEGKGAGLDPIEGDFNVFVKDMCPECLQGDLDLAEKGDGRWKILMQAVQCPVGNSYIEYLLQGSNVWYIKLQVRNARVPATEVRALQGEKWVKLKHTSDGFWEFSTGEKITTPISIHLRSFRGHDIYDIIPEI 224          
BLAST of EWM30607.1 vs. NCBI_GenBank
Match: gi|919054532|ref|XP_013409227.1| (PREDICTED: uncharacterized protein LOC106172860 [Lingula anatina])

HSP 1 Score: 114.39 bits (285), Expect = 2.670e-26
Identity = 71/213 (33.33%), Postives = 109/213 (51.17%), Query Frame = 0
Query:   25 AEGAGSDEWFIKPIRGRSTYYG-NYGGGG-ACGLDQPDGSAIPAEIQ--GIDFTVALDQPQFDVG-GCGMCILLNGTGVGAGGNPVNGIYTAFVNNLCPECEYGHLDFALPGDGSWEIEWKAIPCDVRDHKIRFVFMGSNDFYLKVSTQASRFPTKALRLKMGG--------EWREGWPVHGSYFEFRDGAPFTFPMEVEITSVFGEVLTDWI 224
            A+    +E + K   G  TYYG +Y      C L     S +P ++   GID T A++  QF     CG+C+ + G+G G G NP+ G Y  +V +LCP C+ G +DFAL GDG W I++ A+PC   D+ + + F  S+ +Y+K+    +R P   + L  G            +G+ +       R   P  +P+ V++TSV GEVL D +
Sbjct:   21 AQQTKLNELYQKRFFGEGTYYGQSYNQAKETCQLR----SMLPGKLSDYGIDSTAAINIEQFTGSLTCGICLRVTGSGQGLGLNPLTGPYLVYVTDLCPSCKQGDVDFALVGDGRWNIDFTAVPCPFNDN-VSYRFQDSSPWYIKIQVGNTRLPVTGMALYNGASKEYVPMMRTNDGFWIMNPSILNRYQRPIQYPLRVQLTSVRGEVLQDTV 228          
BLAST of EWM30607.1 vs. NCBI_GenBank
Match: gi|545361008|ref|XP_005645833.1| (hypothetical protein COCSUDRAFT_67155 [Coccomyxa subellipsoidea C-169] >gi|384247803|gb|EIE21289.1| hypothetical protein COCSUDRAFT_67155 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 118.242 bits (295), Expect = 2.982e-26
Identity = 72/212 (33.96%), Postives = 108/212 (50.94%), Query Frame = 0
Query:   40 GRSTYYG---NYGGGGACGLDQPDGSAIPAE-IQGIDFTVALDQPQFDVG-GCGMCILLNGTGVGAGGNPVNGI--YTAFVNNLCPECEYGHLDFALPGDGSWEIEWKAIPCDVRDHKIRFVFMGSNDFYLKVSTQASRFPTKALRLKMGGEW-------REGWPVHGSYFEFRDGAPFTFPMEVEITSVFGEVLTDWIESLQGGPSTIQYT 237
            G  T+YG   +    GAC   +   +A+      G   T+AL++  FD   GCG+CI+  G G G G  PV+    +   VNN+CPEC  G LD  + GDG W+IEW A+PC+V D K+R+  +    +++ +    +R P +++  K+ G+W          W  H    E  D A  +FPM + ITS   E + D I+S  G   T Q++
Sbjct:   27 GEGTFYGHQQDQDAQGACSYSENYANAMHLPWAAGAAVTLALNRDHFDDSRGCGLCIMYRGIGGGIGVTPVSTTNWFMGIVNNICPECSRGDLDQNIDGDGRWKIEWYAVPCNVGDTKMRYDLVVKTYYWIAIVISNTRIPVRSVSAKINGQWFALMRSVTNQWQYH---REVGDWA-GSFPMPIRITSTMNETVEDVIQSADGSTGTKQFS 234          
The following BLAST results are available for this feature:
BLAST of EWM30607.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113279|gb|EWM30607.1|0.000e+0100.00Barwin-related endoglucanase [Nannochloropsis gadi... [more]
gi|676439295|ref|XP_009048807.1|5.267e-3438.57hypothetical protein LOTGIDRAFT_157978 [Lottia gig... [more]
gi|1207919096|ref|XP_021348420.1|7.568e-3234.98uncharacterized protein LOC110447205 [Mizuhopecten... [more]
gi|545372147|ref|XP_005650571.1|1.024e-3133.80hypothetical protein COCSUDRAFT_40205 [Coccomyxa s... [more]
gi|908417500|ref|XP_013070046.1|4.492e-2935.35PREDICTED: expansin-YoaJ-like isoform X1 [Biomphal... [more]
gi|762075411|ref|XP_011442014.1|5.916e-2837.43PREDICTED: uncharacterized protein LOC105338530 [C... [more]
gi|919008626|ref|XP_013389060.1|1.060e-2633.33PREDICTED: uncharacterized protein LOC106157840 [L... [more]
gi|676439308|ref|XP_009048811.1|1.644e-2634.21hypothetical protein LOTGIDRAFT_157982 [Lottia gig... [more]
gi|919054532|ref|XP_013409227.1|2.670e-2633.33PREDICTED: uncharacterized protein LOC106172860 [L... [more]
gi|545361008|ref|XP_005645833.1|2.982e-2633.96hypothetical protein COCSUDRAFT_67155 [Coccomyxa s... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna59rna59Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications