EWM24778.1, cds5896 (CDS) Nannochloropsis gaditana

Overview
NameEWM24778.1
Unique Namecds5896
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:62524..62746 +
Alignment locationCM002467.1:62982..63138 +
Alignment locationCM002467.1:63488..64010 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24778.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100446g4.5998.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:62524..62746 +
CM002467.1supercontigCM002467.1:62982..63138 +
CM002467.1supercontigCM002467.1:63488..64010 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM24778.1 vs. NCBI_GenBank
Match: gi|585106351|gb|EWM24778.1| (hypothetical protein Naga_100446g4 [Nannochloropsis gaditana])

HSP 1 Score: 605.134 bits (1559), Expect = 0.000e+0
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0
Query:    1 MECADGVCKFVPRSQRGVQIGGNEENVEPALPLVSVGDKPPMPLIFETLEEGGRSFSLQRLCAAGEDGGRVVVLDLWSNACVRCPEALDKLNQMSSACQEDVKKHRVTFAAVNIDDKVKARALVAERQWDCLAHFYIDAGTKDTLKARFGLQSVPFVMVFDQVGGGAGGGGRSRGRETADMWSRTLRDRRIGIRGQERFLNPEFKSSWNVDKLSDLPQPARRSHDGGLQRLPTHEAGVAVLPPSLPPSLPLLSGRYSQADGQPQEDRLGGTAGVVDRGATGQGGGGRGGARQGRSGLLLG 300
            MECADGVCKFVPRSQRGVQIGGNEENVEPALPLVSVGDKPPMPLIFETLEEGGRSFSLQRLCAAGEDGGRVVVLDLWSNACVRCPEALDKLNQMSSACQEDVKKHRVTFAAVNIDDKVKARALVAERQWDCLAHFYIDAGTKDTLKARFGLQSVPFVMVFDQVGGGAGGGGRSRGRETADMWSRTLRDRRIGIRGQERFLNPEFKSSWNVDKLSDLPQPARRSHDGGLQRLPTHEAGVAVLPPSLPPSLPLLSGRYSQADGQPQEDRLGGTAGVVDRGATGQGGGGRGGARQGRSGLLLG
Sbjct:    1 MECADGVCKFVPRSQRGVQIGGNEENVEPALPLVSVGDKPPMPLIFETLEEGGRSFSLQRLCAAGEDGGRVVVLDLWSNACVRCPEALDKLNQMSSACQEDVKKHRVTFAAVNIDDKVKARALVAERQWDCLAHFYIDAGTKDTLKARFGLQSVPFVMVFDQVGGGAGGGGRSRGRETADMWSRTLRDRRIGIRGQERFLNPEFKSSWNVDKLSDLPQPARRSHDGGLQRLPTHEAGVAVLPPSLPPSLPLLSGRYSQADGQPQEDRLGGTAGVVDRGATGQGGGGRGGARQGRSGLLLG 300          
BLAST of EWM24778.1 vs. NCBI_GenBank
Match: gi|298709311|emb|CBJ31248.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.0182 bits (175), Expect = 1.864e-10
Identity = 36/100 (36.00%), Postives = 54/100 (54.00%), Query Frame = 0
Query:   69 GRVVVLDLWSNACVRCPEALDKLNQMSSACQEDVKKHRVTFAAVNIDDKVKARALVA----ERQWDCLAHFYIDAGTKDTLKARFGLQSVPFVMVFDQVG 164
             +  V D W+  C  CP ALD L+ ++      + +  VTF AVNIDD   AR LV+    E +W  LAH +++   K+  K   G+++VPF +V  + G
Sbjct:   41 AKATVYDFWTTRCTNCPAALDALDSIA------LGRPSVTFVAVNIDDSSAARELVSQAASEGRWTSLAHVHLEEDEKERAKDILGMRTVPFYVVVSEDG 134          

HSP 2 Score: 65.4698 bits (158), Expect = 3.053e-8
Identity = 55/180 (30.56%), Postives = 81/180 (45.00%), Query Frame = 0
Query:    1 MECADGVCKFV--PRSQRGVQIGGNEENVEPALPLVSVGDKPPMPLIFETLEEGGRSFSLQRLCAAGEDGGRVVVLDLWSNACVRCP-EALDKLNQMSSACQEDVKKHRVTFAAVNIDDKVKARALVAERQWDCLAHFYIDAGTKDT------LKARFGLQSVPFVMV------FDQVGG 165
            MECA GVCK V  P+     Q   +E   E +   + VGD   MP +     +GG + +L  + A G       VLD W+  CVRCP          ++A         VT+ +VN+D    A+ +V++  W  L H       +++       K R GL+SVPF +V       +Q+GG
Sbjct:  326 MECAGGVCKLVRKPKKAAEEQPSVSERKEEASESPLVVGDA--MPSLQVVPIDGGSATTLDDVRAGGP-----AVLDFWTTRCVRCPAALDALEGLAAAAAAAATGDDAVTYISVNLDSLEGAQEIVSKGGWPTLTHTIPRGNEEESEALLERFKTRAGLKSVPFYVVVARDGRIEQIGG 498          
BLAST of EWM24778.1 vs. NCBI_GenBank
Match: gi|1072237531|gb|OEU22258.1| (hypothetical protein FRACYDRAFT_258990 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 69.707 bits (169), Expect = 2.120e-10
Identity = 37/113 (32.74%), Postives = 59/113 (52.21%), Query Frame = 0
Query:   69 GRVVVLDLWSNACVRCPEALDKLNQMSSACQEDVKKHRVTFAAVNIDDKVKARALVA---ERQWDCLAHFYIDAGTKDTLKARFGLQSVPFVMVFDQVGG-GAGGGGRSRGRE 177
            G+  V+D W+  C +CP+ALDKL+ M+    +D K   V F ++  D    AR ++    + +W  + H+++D   K+T K   G + VPF +V D+ G     G GR    E
Sbjct:   29 GKNTVIDFWTTGCTQCPDALDKLDDMA----QDPKYKDVQFISICCDKLDGARDIIERDDDLRWQNVNHYFMDKEDKETAKKLLGFKQVPFYVVMDENGSITQSGSGRQVDFE 137          
BLAST of EWM24778.1 vs. NCBI_GenBank
Match: gi|676380793|ref|XP_009033675.1| (hypothetical protein AURANDRAFT_70838 [Aureococcus anophagefferens] >gi|323455422|gb|EGB11290.1| hypothetical protein AURANDRAFT_70838 [Aureococcus anophagefferens])

HSP 1 Score: 63.1586 bits (152), Expect = 1.468e-8
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 0
Query:   79 NACVRCPEALDKLNQMSSACQEDVKKHRVTFAAVNIDDKVKARALVAERQWDCLAHFYIDAGTKDTLKARFGLQSVPFVMVFDQVGGGAGGGG 171
             A VRCP  L KL+    A   DV      FA+V +DD   A+ +V E +W+ +AH  +DA TK+  KA +G ++VP+++V D  G  A  G 
Sbjct:   26 KALVRCPACLTKLDGFVEAFGGDV-----AFASVCLDDPEFAKEIVEEHEWERMAHAGMDAETKELAKAHWGFKAVPYLVVLDATGETAFAGS 113          
BLAST of EWM24778.1 vs. NCBI_GenBank
Match: gi|1210513285|dbj|GAX27682.1| (hypothetical protein FisN_13Hh223 [Fistulifera solaris])

HSP 1 Score: 61.2326 bits (147), Expect = 9.380e-8
Identity = 34/125 (27.20%), Postives = 58/125 (46.40%), Query Frame = 0
Query:   40 PPMPLIFETLEEGGRSFSLQRLCAAGEDGGRVVVLDLWSNACVRCPEALDKLNQMSSACQEDVKKHRVTFAAVNIDDKVKARALVA---ERQWDCLAHFYIDAGTKDTLKARFGLQSVPFVMVFD 161
            P +PLI     E   +  + R        G   V+D W+  C  CP+ALDKL  +++          V FA++  D    AR ++    + +W  + H++++   K+  K  FG + VPF +V +
Sbjct:    6 PRLPLISLDTAEETNTHEIAR--------GHHTVIDFWTTRCTNCPDALDKLQHLAATSS------NVRFASICCDSLDGAREIIGRHDDMRWSSVHHYFMEHADKELCKQIFGFKKVPFYVVLN 116          
BLAST of EWM24778.1 vs. NCBI_GenBank
Match: gi|922860128|gb|KOO28056.1| (redoxin domain-containing protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 60.4622 bits (145), Expect = 2.387e-7
Identity = 32/99 (32.32%), Postives = 50/99 (50.51%), Query Frame = 0
Query:   68 GGRVVVLDLWSNACVRCPEALDKLNQMSSACQEDVKKHRVTFAAVNID-----DKVKARAL-VAERQWDCLAHFYIDAGTKDTLKARFGLQSVPFVMVF 160
             G+ +VLD W   C +CP A+ KL+ ++       K   VTFAA  +      +  + + L + E QW+ L H Y+    K+  K +FG   +PF +VF
Sbjct:   31 AGKPLVLDFWHTRCTKCPTAISKLDTIAP------KHPDVTFAACALSLGSETEGTQEQVLDLLEGQWENLRHMYMTVAEKEAAKTQFGFTQLPFAVVF 123          
The following BLAST results are available for this feature:
BLAST of EWM24778.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585106351|gb|EWM24778.1|0.000e+0100.00hypothetical protein Naga_100446g4 [Nannochloropsi... [more]
gi|298709311|emb|CBJ31248.1|1.864e-1036.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072237531|gb|OEU22258.1|2.120e-1032.74hypothetical protein FRACYDRAFT_258990 [Fragilario... [more]
gi|676380793|ref|XP_009033675.1|1.468e-838.71hypothetical protein AURANDRAFT_70838 [Aureococcus... [more]
gi|1210513285|dbj|GAX27682.1|9.380e-827.20hypothetical protein FisN_13Hh223 [Fistulifera sol... [more]
gi|922860128|gb|KOO28056.1|2.387e-732.32redoxin domain-containing protein [Chrysochromulin... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5911rna5911Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications