EWM24778.1, cds5896 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24778.1 vs. NCBI_GenBank
Match: gi|585106351|gb|EWM24778.1| (hypothetical protein Naga_100446g4 [Nannochloropsis gaditana]) HSP 1 Score: 605.134 bits (1559), Expect = 0.000e+0 Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0
Query: 1 MECADGVCKFVPRSQRGVQIGGNEENVEPALPLVSVGDKPPMPLIFETLEEGGRSFSLQRLCAAGEDGGRVVVLDLWSNACVRCPEALDKLNQMSSACQEDVKKHRVTFAAVNIDDKVKARALVAERQWDCLAHFYIDAGTKDTLKARFGLQSVPFVMVFDQVGGGAGGGGRSRGRETADMWSRTLRDRRIGIRGQERFLNPEFKSSWNVDKLSDLPQPARRSHDGGLQRLPTHEAGVAVLPPSLPPSLPLLSGRYSQADGQPQEDRLGGTAGVVDRGATGQGGGGRGGARQGRSGLLLG 300
MECADGVCKFVPRSQRGVQIGGNEENVEPALPLVSVGDKPPMPLIFETLEEGGRSFSLQRLCAAGEDGGRVVVLDLWSNACVRCPEALDKLNQMSSACQEDVKKHRVTFAAVNIDDKVKARALVAERQWDCLAHFYIDAGTKDTLKARFGLQSVPFVMVFDQVGGGAGGGGRSRGRETADMWSRTLRDRRIGIRGQERFLNPEFKSSWNVDKLSDLPQPARRSHDGGLQRLPTHEAGVAVLPPSLPPSLPLLSGRYSQADGQPQEDRLGGTAGVVDRGATGQGGGGRGGARQGRSGLLLG
Sbjct: 1 MECADGVCKFVPRSQRGVQIGGNEENVEPALPLVSVGDKPPMPLIFETLEEGGRSFSLQRLCAAGEDGGRVVVLDLWSNACVRCPEALDKLNQMSSACQEDVKKHRVTFAAVNIDDKVKARALVAERQWDCLAHFYIDAGTKDTLKARFGLQSVPFVMVFDQVGGGAGGGGRSRGRETADMWSRTLRDRRIGIRGQERFLNPEFKSSWNVDKLSDLPQPARRSHDGGLQRLPTHEAGVAVLPPSLPPSLPLLSGRYSQADGQPQEDRLGGTAGVVDRGATGQGGGGRGGARQGRSGLLLG 300
BLAST of EWM24778.1 vs. NCBI_GenBank
Match: gi|298709311|emb|CBJ31248.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 72.0182 bits (175), Expect = 1.864e-10 Identity = 36/100 (36.00%), Postives = 54/100 (54.00%), Query Frame = 0
Query: 69 GRVVVLDLWSNACVRCPEALDKLNQMSSACQEDVKKHRVTFAAVNIDDKVKARALVA----ERQWDCLAHFYIDAGTKDTLKARFGLQSVPFVMVFDQVG 164
+ V D W+ C CP ALD L+ ++ + + VTF AVNIDD AR LV+ E +W LAH +++ K+ K G+++VPF +V + G
Sbjct: 41 AKATVYDFWTTRCTNCPAALDALDSIA------LGRPSVTFVAVNIDDSSAARELVSQAASEGRWTSLAHVHLEEDEKERAKDILGMRTVPFYVVVSEDG 134 HSP 2 Score: 65.4698 bits (158), Expect = 3.053e-8 Identity = 55/180 (30.56%), Postives = 81/180 (45.00%), Query Frame = 0
Query: 1 MECADGVCKFV--PRSQRGVQIGGNEENVEPALPLVSVGDKPPMPLIFETLEEGGRSFSLQRLCAAGEDGGRVVVLDLWSNACVRCP-EALDKLNQMSSACQEDVKKHRVTFAAVNIDDKVKARALVAERQWDCLAHFYIDAGTKDT------LKARFGLQSVPFVMV------FDQVGG 165
MECA GVCK V P+ Q +E E + + VGD MP + +GG + +L + A G VLD W+ CVRCP ++A VT+ +VN+D A+ +V++ W L H +++ K R GL+SVPF +V +Q+GG
Sbjct: 326 MECAGGVCKLVRKPKKAAEEQPSVSERKEEASESPLVVGDA--MPSLQVVPIDGGSATTLDDVRAGGP-----AVLDFWTTRCVRCPAALDALEGLAAAAAAAATGDDAVTYISVNLDSLEGAQEIVSKGGWPTLTHTIPRGNEEESEALLERFKTRAGLKSVPFYVVVARDGRIEQIGG 498
BLAST of EWM24778.1 vs. NCBI_GenBank
Match: gi|1072237531|gb|OEU22258.1| (hypothetical protein FRACYDRAFT_258990 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 69.707 bits (169), Expect = 2.120e-10 Identity = 37/113 (32.74%), Postives = 59/113 (52.21%), Query Frame = 0
Query: 69 GRVVVLDLWSNACVRCPEALDKLNQMSSACQEDVKKHRVTFAAVNIDDKVKARALVA---ERQWDCLAHFYIDAGTKDTLKARFGLQSVPFVMVFDQVGG-GAGGGGRSRGRE 177
G+ V+D W+ C +CP+ALDKL+ M+ +D K V F ++ D AR ++ + +W + H+++D K+T K G + VPF +V D+ G G GR E
Sbjct: 29 GKNTVIDFWTTGCTQCPDALDKLDDMA----QDPKYKDVQFISICCDKLDGARDIIERDDDLRWQNVNHYFMDKEDKETAKKLLGFKQVPFYVVMDENGSITQSGSGRQVDFE 137
BLAST of EWM24778.1 vs. NCBI_GenBank
Match: gi|676380793|ref|XP_009033675.1| (hypothetical protein AURANDRAFT_70838 [Aureococcus anophagefferens] >gi|323455422|gb|EGB11290.1| hypothetical protein AURANDRAFT_70838 [Aureococcus anophagefferens]) HSP 1 Score: 63.1586 bits (152), Expect = 1.468e-8 Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 0
Query: 79 NACVRCPEALDKLNQMSSACQEDVKKHRVTFAAVNIDDKVKARALVAERQWDCLAHFYIDAGTKDTLKARFGLQSVPFVMVFDQVGGGAGGGG 171
A VRCP L KL+ A DV FA+V +DD A+ +V E +W+ +AH +DA TK+ KA +G ++VP+++V D G A G
Sbjct: 26 KALVRCPACLTKLDGFVEAFGGDV-----AFASVCLDDPEFAKEIVEEHEWERMAHAGMDAETKELAKAHWGFKAVPYLVVLDATGETAFAGS 113
BLAST of EWM24778.1 vs. NCBI_GenBank
Match: gi|1210513285|dbj|GAX27682.1| (hypothetical protein FisN_13Hh223 [Fistulifera solaris]) HSP 1 Score: 61.2326 bits (147), Expect = 9.380e-8 Identity = 34/125 (27.20%), Postives = 58/125 (46.40%), Query Frame = 0
Query: 40 PPMPLIFETLEEGGRSFSLQRLCAAGEDGGRVVVLDLWSNACVRCPEALDKLNQMSSACQEDVKKHRVTFAAVNIDDKVKARALVA---ERQWDCLAHFYIDAGTKDTLKARFGLQSVPFVMVFD 161
P +PLI E + + R G V+D W+ C CP+ALDKL +++ V FA++ D AR ++ + +W + H++++ K+ K FG + VPF +V +
Sbjct: 6 PRLPLISLDTAEETNTHEIAR--------GHHTVIDFWTTRCTNCPDALDKLQHLAATSS------NVRFASICCDSLDGAREIIGRHDDMRWSSVHHYFMEHADKELCKQIFGFKKVPFYVVLN 116
BLAST of EWM24778.1 vs. NCBI_GenBank
Match: gi|922860128|gb|KOO28056.1| (redoxin domain-containing protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 60.4622 bits (145), Expect = 2.387e-7 Identity = 32/99 (32.32%), Postives = 50/99 (50.51%), Query Frame = 0
Query: 68 GGRVVVLDLWSNACVRCPEALDKLNQMSSACQEDVKKHRVTFAAVNID-----DKVKARAL-VAERQWDCLAHFYIDAGTKDTLKARFGLQSVPFVMVF 160
G+ +VLD W C +CP A+ KL+ ++ K VTFAA + + + + L + E QW+ L H Y+ K+ K +FG +PF +VF
Sbjct: 31 AGKPLVLDFWHTRCTKCPTAISKLDTIAP------KHPDVTFAACALSLGSETEGTQEQVLDLLEGQWENLRHMYMTVAEKEAAKTQFGFTQLPFAVVF 123 The following BLAST results are available for this feature:
BLAST of EWM24778.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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