EWM24791.1, cds5882 (CDS) Nannochloropsis gaditana

Overview
NameEWM24791.1
Unique Namecds5882
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:24194..24328 -
Alignment locationCM002467.1:23815..24066 -
Alignment locationCM002467.1:23421..23644 -

Link to JBrowse

Properties
Property NameValue
Start range23421
Start range.
Protein idEWM24791.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_102088g1.2155.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:24194..24328 -
CM002467.1supercontigCM002467.1:23815..24066 -
CM002467.1supercontigCM002467.1:23421..23644 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM24791.1 vs. NCBI_GenBank
Match: gi|585106379|gb|EWM24791.1| (hypothetical protein Naga_102088g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 394.815 bits (1013), Expect = 1.003e-138
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0 
Query:    1 MEREAVVEQARFLQSLYDNETARFEAGMRKMVRMLKEEEAAHLAKEAKARTETQDVIREYTEALKAKDGLLEAWNKKDEEWEAAREGWREERAEGEAALLKALEVVARLEGEVARREQENAAWARKAEEKQKRIKELQSTISSLEAAKRTAGKEAARLLALTQEEHARAAASWQAEMASARVQARVRNLPPFLPPSLPPPSYSP 204
            MEREAVVEQARFLQSLYDNETARFEAGMRKMVRMLKEEEAAHLAKEAKARTETQDVIREYTEALKAKDGLLEAWNKKDEEWEAAREGWREERAEGEAALLKALEVVARLEGEVARREQENAAWARKAEEKQKRIKELQSTISSLEAAKRTAGKEAARLLALTQEEHARAAASWQAEMASARVQARVRNLPPFLPPSLPPPSYSP
Sbjct:    1 MEREAVVEQARFLQSLYDNETARFEAGMRKMVRMLKEEEAAHLAKEAKARTETQDVIREYTEALKAKDGLLEAWNKKDEEWEAAREGWREERAEGEAALLKALEVVARLEGEVARREQENAAWARKAEEKQKRIKELQSTISSLEAAKRTAGKEAARLLALTQEEHARAAASWQAEMASARVQARVRNLPPFLPPSLPPPSYSP 204
The following BLAST results are available for this feature:
BLAST of EWM24791.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106379|gb|EWM24791.1|1.003e-138100.00hypothetical protein Naga_102088g1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5897rna5897Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications