EWM24809.1, cds5852 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24809.1 vs. NCBI_GenBank
Match: gi|585106403|gb|EWM24809.1| (hypothetical protein Naga_100294g1 [Nannochloropsis gaditana]) HSP 1 Score: 717.613 bits (1851), Expect = 0.000e+0 Identity = 354/354 (100.00%), Postives = 354/354 (100.00%), Query Frame = 0 Query: 1 MAADNHIHEDESNDAVTPFGAPSSSVPSSLLDLPLHHMLRTLQLQHGLRHGDYQRYRHYLNRRLARLRKGVNATHRGGKAFESKNVHSLAYLEGDSSALKKEHLLLVLLNAERAWAFAMHLQQDAAGNQHMPSYVRSHLLRRLRRAGVWAARLLGLVEDASDQVTERTSLEVQAYAGWMGAAVDVEQEEWGHALVKLRTGYSILSQLGELGSLEEQDLFLSKADEVLQSARYCQYNLGEGSFEDLNLDVDTNGATKNIPEALVEKLNAVKEASRAAAATGLETVDWGGRQLHVSSKEVRLALIKLEEARTALESWLGSMAGAKIKQGVGGGGGKSPTPLSSRHMAMLYSGWAKR 354 MAADNHIHEDESNDAVTPFGAPSSSVPSSLLDLPLHHMLRTLQLQHGLRHGDYQRYRHYLNRRLARLRKGVNATHRGGKAFESKNVHSLAYLEGDSSALKKEHLLLVLLNAERAWAFAMHLQQDAAGNQHMPSYVRSHLLRRLRRAGVWAARLLGLVEDASDQVTERTSLEVQAYAGWMGAAVDVEQEEWGHALVKLRTGYSILSQLGELGSLEEQDLFLSKADEVLQSARYCQYNLGEGSFEDLNLDVDTNGATKNIPEALVEKLNAVKEASRAAAATGLETVDWGGRQLHVSSKEVRLALIKLEEARTALESWLGSMAGAKIKQGVGGGGGKSPTPLSSRHMAMLYSGWAKR Sbjct: 1 MAADNHIHEDESNDAVTPFGAPSSSVPSSLLDLPLHHMLRTLQLQHGLRHGDYQRYRHYLNRRLARLRKGVNATHRGGKAFESKNVHSLAYLEGDSSALKKEHLLLVLLNAERAWAFAMHLQQDAAGNQHMPSYVRSHLLRRLRRAGVWAARLLGLVEDASDQVTERTSLEVQAYAGWMGAAVDVEQEEWGHALVKLRTGYSILSQLGELGSLEEQDLFLSKADEVLQSARYCQYNLGEGSFEDLNLDVDTNGATKNIPEALVEKLNAVKEASRAAAATGLETVDWGGRQLHVSSKEVRLALIKLEEARTALESWLGSMAGAKIKQGVGGGGGKSPTPLSSRHMAMLYSGWAKR 354
BLAST of EWM24809.1 vs. NCBI_GenBank
Match: gi|553178443|ref|XP_005852554.1| (signal recognition particle subunit SRP68, partial [Nannochloropsis gaditana CCMP526] >gi|422295979|gb|EKU23278.1| signal recognition particle subunit SRP68, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 654.055 bits (1686), Expect = 0.000e+0 Identity = 323/336 (96.13%), Postives = 329/336 (97.92%), Query Frame = 0 Query: 1 MAADNHIHEDESNDAVTPFGAPSSSVPSSLLDLPLHHMLRTLQLQHGLRHGDYQRYRHYLNRRLARLRKGVNATHRGGKAFESKNVHSLAYLEGDSSALKKEHLLLVLLNAERAWAFAMHLQQDAAGNQHMPSYVRSHLLRRLRRAGVWAARLLGLVEDASDQVTERTSLEVQAYAGWMGAAVDVEQEEWGHALVKLRTGYSILSQLGELGSLEEQDLFLSKADEVLQSARYCQYNLGEGSFEDLNLDVDTNGATKNIPEALVEKLNAVKEASRAAAATGLETVDWGGRQLHVSSKEVRLALIKLEEARTALESWLGSMAGAKIKQGVGGGGGKSP 336 MAADNH+HEDESNDAVTP GAPSSSVPSSLLDLPLHHMLRTLQLQHGLRHGDYQRYRHYLNRRLARLRKGVNATHRGGKAFESKNVHSLAYLEGD SALKKEHLLLVLLNAERAWAFAMHLQQDAAGNQHMPSYVRSHLLRRLRRAGVWAARLLGLVEDASDQVTERTSLEVQAYAGWMGAAVDVEQEEWGHALVKLRT +SILSQLGELGSLEEQDLFLSKADEVLQSARYCQYNLGEGSFEDLNLDVDTNGATKNIPEALVEKLNAVKEASRAAAATGLETV+WGGRQLHVSSKEVRLALIKLEEARTAL+SWL SMAGAK+KQGVGGG + P Sbjct: 1 MAADNHVHEDESNDAVTPLGAPSSSVPSSLLDLPLHHMLRTLQLQHGLRHGDYQRYRHYLNRRLARLRKGVNATHRGGKAFESKNVHSLAYLEGDPSALKKEHLLLVLLNAERAWAFAMHLQQDAAGNQHMPSYVRSHLLRRLRRAGVWAARLLGLVEDASDQVTERTSLEVQAYAGWMGAAVDVEQEEWGHALVKLRTAHSILSQLGELGSLEEQDLFLSKADEVLQSARYCQYNLGEGSFEDLNLDVDTNGATKNIPEALVEKLNAVKEASRAAAATGLETVEWGGRQLHVSSKEVRLALIKLEEARTALDSWLRSMAGAKVKQGVGGGVREEP 336
BLAST of EWM24809.1 vs. NCBI_GenBank
Match: gi|585106398|gb|EWM24805.1| (hypothetical protein Naga_100628g7 [Nannochloropsis gaditana]) HSP 1 Score: 309.301 bits (791), Expect = 8.105e-102 Identity = 153/156 (98.08%), Postives = 154/156 (98.72%), Query Frame = 0 Query: 1 MAADNHIHEDESNDAVTPFGAPSSSVPSSLLDLPLHHMLRTLQLQHGLRHGDYQRYRHYLNRRLARLRKGVNATHRGGKAFESKNVHSLAYLEGDSSALKKEHLLLVLLNAERAWAFAMHLQQDAAGNQHMPSYVRSHLLRRLRRAGVWAARLLGL 156 MAADNHIHEDESNDAVTPFGAPSSSVPSSLLDLPLHHMLRTLQLQHGLRHGDYQRYRHYLNRRLARLRKGVNATHRGGKAFESKNVHSLAYLEGDSSALKKEHLLLVLLNAER AFAMHLQQDAAGNQHMPSYVRSHLLRRLRRAGVWAARLLG+ Sbjct: 1 MAADNHIHEDESNDAVTPFGAPSSSVPSSLLDLPLHHMLRTLQLQHGLRHGDYQRYRHYLNRRLARLRKGVNATHRGGKAFESKNVHSLAYLEGDSSALKKEHLLLVLLNAER--AFAMHLQQDAAGNQHMPSYVRSHLLRRLRRAGVWAARLLGV 154
BLAST of EWM24809.1 vs. NCBI_GenBank
Match: gi|299470816|emb|CBN78639.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 173.711 bits (439), Expect = 2.843e-45 Identity = 113/323 (34.98%), Postives = 169/323 (52.32%), Query Frame = 0 Query: 9 EDESNDAVTPFGAPSSSVPS-SLLDLPLHHMLRTLQLQHGLRHGDYQRYRHYLNRRLARLRK--GVNATHRGGKAFESKNVHSLAYLEGDSSALKKEHLLLVLLNAERAWAFAMHLQQDAAGNQHMPSYVRSHLLRRLRRAGVWAARLLGLVEDASDQVTERTSLEVQAYAGWMGAAVDVEQEEWGHALVKLRTGYSILSQLGELGSLEEQDLFLSKADEVLQSARYCQYNLGEGSFED-LNLDVDTNGATKNIPEALVEKLNAVKEASRAAAATGLETVDWGGRQLHVSSKEVRLALIKLEEARTALESWLGSMAGAKIKQG 327 ED S + V PS + L L +H + + Q ++GLRHGDY +YR Y RRL R+R V GK F K + S HL + L+ AERAWAFAM +Q+ A P VR H++ RL +A W+ L L + +D ERT LE AY WM + +E+E W AL + T I +LG++G++E+QDLF + +E+ RYC+YNL + E+ L + + + A ++ L KL +V +R A+ L++V+W G+++ V S+ +R+AL+K +E LE+ GS K G Sbjct: 5 EDGSAECVVGMEVAKEPAPSLAKLSLKVHEIAKDAQNRNGLRHGDYHQYRQYCTRRLKRVRSLPQVRFMFGKGKGFVQKELTP-------ESVTSASHLEIPLMMAERAWAFAMQRKQETA---DAPYRVRRHVVTRLAKAAKWSGDLEALCLETAD---ERTCLEATAYCAWMSGNLLLEKEAWREALDRFSTADRICQELGKVGAIEDQDLFSRRVEEIEPILRYCRYNLDATASEELLEMSREDSSAGGDL---LAAKLESVVAEARKKQASALDSVEWRGKKVAVRSETLRVALVKADELARRLEAGGGSPGCEDPKPG 311
BLAST of EWM24809.1 vs. NCBI_GenBank
Match: gi|751784651|ref|XP_011201627.1| (PREDICTED: signal recognition particle subunit SRP68 [Bactrocera dorsalis]) HSP 1 Score: 171.785 bits (434), Expect = 7.480e-45 Identity = 103/297 (34.68%), Postives = 163/297 (54.88%), Query Frame = 0 Query: 21 APSSSVPSSLLDLPLHHMLRTLQLQHGLRHGDYQRYRHYLNRRLARLRKGVNATHRGGKAFESKNVHSLAYLEGDSSALKKEHLLLVLLNAERAWAFAMHLQQDAAGNQHMPSYVRSHLLRRLRRAGVWAARLLGLVEDASDQVTERTSLEVQAYAGWMGAAVDVEQEEWGHALVKLRTGYSILSQLGELGSLEEQDLFLSKADEVLQSARYCQYNLGEG----SFEDLNLDVDTNGATKNIPEALVEKLNAVKEASRAAAATGLETVDWGGRQLHVSSKEVRLALIKLEEARTALE 313 AP P+ + + + HM++ Q QHGLRHGDYQRYR Y RR+ RLRK + + F+ K+V +LA L G + + H+ L+ +AERAW++AM L+Q+A R HL+ +LRRA +A +L L S+ RT LE +AY WM + E + WG AL L+ + L + +EQ+L+ +K +E + RYC YN+G G +DL L++ G L+E L+ + ++ ++ GL+T++W R++ V ++VRL L+ ++E +LE Sbjct: 19 APPPPEPTKIFTVEILHMVKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKTLKYPQGDKRHFKRKDV-TLAQLTGKRADERFIHIPLI--SAERAWSYAMQLKQEANTEPRK----RFHLINKLRRACFYALQLQELCN--SEAFDARTKLECEAYVAWMHGTLHFELQLWGSALEHLKRAQVVYENLAKALPEDEQELYRAKVNEFTPNLRYCAYNIGGGGGTNKIDDL-LELRAQG--------LLENLDLLVSQTKMESSEGLQTIEWRSRKVTVRPEKVRLFLLSIQEVDKSLE 297
BLAST of EWM24809.1 vs. NCBI_GenBank
Match: gi|1098622898|ref|XP_018804164.1| (PREDICTED: signal recognition particle subunit SRP68 [Bactrocera latifrons]) HSP 1 Score: 169.088 bits (427), Expect = 8.631e-44 Identity = 106/317 (33.44%), Postives = 168/317 (53.00%), Query Frame = 0 Query: 1 MAADNHIHEDESNDAVTPFGAPSSSVPSSLLDLPLHHMLRTLQLQHGLRHGDYQRYRHYLNRRLARLRKGVNATHRGGKAFESKNVHSLAYLEGDSSALKKEHLLLVLLNAERAWAFAMHLQQDAAGNQHMPSYVRSHLLRRLRRAGVWAARLLGLVEDASDQVTERTSLEVQAYAGWMGAAVDVEQEEWGHALVKLRTGYSILSQLGELGSLEEQDLFLSKADEVLQSARYCQYNLGEG----SFEDLNLDVDTNGATKNIPEALVEKLNAVKEASRAAAATGLETVDWGGRQLHVSSKEVRLALIKLEEARTALE 313 M + I E+ V P P+ + + + HM++ Q QHGLRHGDYQRYR Y RR+ RLRK + + F+ K+V +LA L G + + H+ L+ +AERAW++AM L+Q+A R HL+ +LRRA +A +L L S+ RT LE +AY WM + E + WG AL L+ + L + +EQ+L+ +K +E + RYC YN+G G +DL L++ G L+E L+ + ++ ++ GL+T++W R++ V ++VRL L+ ++E +LE Sbjct: 1 MVEETPIVENVEKTEVEQAAPPPE--PTKIFTVEILHMVKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKTLKYPQGDKRHFKRKDV-TLAQLTGKRADERFIHIPLI--SAERAWSYAMQLKQEANTEPRK----RFHLINKLRRACFYALQLQELCN--SEAFDARTKLECEAYVAWMHGTLHFELQLWGSALEHLKRAQVVYENLAKALPEDEQELYRAKVNEFTPNLRYCAYNIGGGGGTNKIDDL-LELRAQG--------LLENLDLLVSQTKMESSEGLQTIEWRSRKVTVRPEKVRLFLLSIQEVDKSLE 297
BLAST of EWM24809.1 vs. NCBI_GenBank
Match: gi|751443071|ref|XP_011196208.1| (PREDICTED: signal recognition particle subunit SRP68 [Zeugodacus cucurbitae]) HSP 1 Score: 164.851 bits (416), Expect = 2.517e-42 Identity = 101/288 (35.07%), Postives = 160/288 (55.56%), Query Frame = 0 Query: 30 LLDLPLHHMLRTLQLQHGLRHGDYQRYRHYLNRRLARLRKGVNATHRGGKAFESKNVHSLAYLEGDSSALKKEHLLLVLLNAERAWAFAMHLQQDAAGNQHMPSYVRSHLLRRLRRAGVWAARLLGLVEDASDQVTERTSLEVQAYAGWMGAAVDVEQEEWGHALVKLRTGYSILSQLGELGSLEEQDLFLSKADEVLQSARYCQYNLGEG----SFEDLNLDVDTNGATKNIPEALVEKLNAVKEASRAAAATGLETVDWGGRQLHVSSKEVRLALIKLEEARTALE 313 + + + HM++ Q QHGLRHGDYQRYR Y RR+ RLRK + + F+ K+V +LA L G + + H+ L+ +AERAWA+AM L+Q+A R HL+ +LRRA +A +L L S+ RT LE +AY WM ++ E + WG AL L+ + L + +EQ+L+ +K +E + RYC YN+G G +DL L++ G L+E L+ + ++ ++ GL+T++W R++ V ++VRL L+ ++E +LE Sbjct: 28 VFTVEILHMVKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKALKYPQGDKRHFKRKDV-TLAQLTGKRADERFIHIPLI--SAERAWAYAMQLKQEANTEPRK----RFHLINKLRRACFYALQLQELCN--SEAFDARTKLECEAYVAWMHGSLHFELQLWGSALEHLKRAQVVYENLAKALPEDEQELYRAKVNEFTPNLRYCAYNIGGGGGTNKIDDL-LELRAQG--------LLENLDLLVSQTKVESSEGLQTIEWRSRKVTVRPEKVRLFLLSIQEVDKSLE 297
BLAST of EWM24809.1 vs. NCBI_GenBank
Match: gi|498965524|ref|XP_004525603.1| (signal recognition particle subunit SRP68 [Ceratitis capitata]) HSP 1 Score: 164.466 bits (415), Expect = 3.745e-42 Identity = 99/297 (33.33%), Postives = 162/297 (54.55%), Query Frame = 0 Query: 21 APSSSVPSSLLDLPLHHMLRTLQLQHGLRHGDYQRYRHYLNRRLARLRKGVNATHRGGKAFESKNVHSLAYLEGDSSALKKEHLLLVLLNAERAWAFAMHLQQDAAGNQHMPSYVRSHLLRRLRRAGVWAARLLGLVEDASDQVTERTSLEVQAYAGWMGAAVDVEQEEWGHALVKLRTGYSILSQLGELGSLEEQDLFLSKADEVLQSARYCQYNLGEG----SFEDLNLDVDTNGATKNIPEALVEKLNAVKEASRAAAATGLETVDWGGRQLHVSSKEVRLALIKLEEARTALE 313 AP + P + + + HM++ Q QHGLRHGDYQRYR Y RR+ RLRK + + F+ ++V +L L G + + H+ L+ +AERAW++AM L+Q+A R H++ +LRRA +A +L L S+ RT LE +AY WM ++ E + W AL L+ + L + +EQ+L+ +K +E + RYC YN+G G +DL L++ G L+E L+ + ++ ++ GL+T++W R++ V ++VRL L+ ++E +LE Sbjct: 19 APLPTEPIKIFTVEILHMVKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKALKYPQGDKRHFKRRDV-TLVQLTGKRADERFIHIPLI--SAERAWSYAMQLKQEANTEPRK----RFHMINKLRRACFYALQLQELCN--SEAFDARTKLECEAYVAWMHGSLHFELQLWDKALDHLKRAQVVYENLAKALPEDEQELYHAKVNEFTPNLRYCAYNIGGGGGTNKMDDL-LELRAQG--------LLENLDMLVSQTKVESSEGLQTIEWRNRKVTVRPEKVRLFLLSIQEVDKSLE 297
BLAST of EWM24809.1 vs. NCBI_GenBank
Match: gi|170044520|ref|XP_001849893.1| (signal recognition particle 68 kDa protein [Culex quinquefasciatus] >gi|167867633|gb|EDS31016.1| signal recognition particle 68 kDa protein [Culex quinquefasciatus]) HSP 1 Score: 163.696 bits (413), Expect = 8.298e-42 Identity = 98/289 (33.91%), Postives = 165/289 (57.09%), Query Frame = 0 Query: 25 SVPSSLLDLPLHHMLRTLQLQHGLRHGDYQRYRHYLNRRLARLRKGVNATHRGGKAFESKNVHSLAYLEGDSSALKKEHLLLVLLNAERAWAFAMHLQQDAAGNQHMPSYVRSHLLRRLRRAGVWAARLLGLVEDASDQVTERTSLEVQAYAGWMGAAVDVEQEEWGHALVKLRTGYSILSQLGELGSLEEQDLFLSKADEVLQSARYCQYNLGEGSFEDLNLDVDTNGATKNIPEALVEKLNAVKEASRAAAATGLETVDWGGRQLHVSSKEVRLALIKLEEARTALE 313 + PS + + + +++ LQLQHGLRHGDYQRYR Y +RR+ RLRK +N + F+ ++V +LA LE ++S + H+ L+L AERAWA+AM L+Q++ R HL+ ++R+A V+A +L L S+ RT LE +AY+ W+ ++ E W A L+ I L + EEQ ++ +K DE+ S RYC YN+GE +NL ++ G + +++ L+A+ ++ + +T +W GR++ V ++VRL L+ +++ ++E Sbjct: 33 TAPSKVFTIEILRVIKDLQLQHGLRHGDYQRYRGYCSRRVKRLRKTLNLPQGDKRHFKKRDV-TLANLERENSDERFIHIPLML--AERAWAYAMQLRQESNTEPRK----RFHLVGKMRKATVYALQLQELCN--SEYCDARTKLEAEAYSAWIHGSLHFELSLWKQAAENLKKAQMIYENLAQALPEEEQAVYKAKVDELTPSLRYCAYNVGEKG--AINL-LEMRG------QGMMDNLSALVAQTKTESMEAFQTTEWRGRKVTVRPEKVRLFLLSIQDLANSIE 303
BLAST of EWM24809.1 vs. NCBI_GenBank
Match: gi|1048039729|ref|XP_017476722.1| (PREDICTED: signal recognition particle subunit SRP68 [Rhagoletis zephyria]) HSP 1 Score: 162.155 bits (409), Expect = 2.697e-41 Identity = 100/297 (33.67%), Postives = 163/297 (54.88%), Query Frame = 0 Query: 22 PSSSV-PSSLLDLPLHHMLRTLQLQHGLRHGDYQRYRHYLNRRLARLRKGVNATHRGGKAFESKNVHSLAYLEGDSSALKKEHLLLVLLNAERAWAFAMHLQQDAAGNQHMPSYVRSHLLRRLRRAGVWAARLLGLVEDASDQVTERTSLEVQAYAGWMGAAVDVEQEEWGHALVKLRTGYSILSQLGELGSLEEQDLFLSKADEVLQSARYCQYNLGEG----SFEDLNLDVDTNGATKNIPEALVEKLNAVKEASRAAAATGLETVDWGGRQLHVSSKEVRLALIKLEEARTALE 313 P+ V P+ + + + HM++ Q QHGLRHGDYQRYR Y RR+ RLRK + + F+ ++V +LA L G + + H+ L+ +AER W++AM L+Q+A R HL+ +LR+A +A +L L S+ RT LE +AY WM ++ E + WG AL L+ + L + +EQ+L+ K +E + RYC YN+G G +DL L++ G L+E L+ + ++ ++ GL+T++W R++ V ++VRL L+ ++E +LE Sbjct: 19 PAQPVEPTKVFTVEVLHMVKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKALKYPQGDKRHFKRRDV-TLAQLTGKRADERFIHIPLI--SAERDWSYAMQLKQEANTEPRK----RFHLINKLRKACFYALQLQELCN--SEVFDARTKLECEAYVAWMHGSLHFELQLWGSALEHLKRAQVVYENLAKALPDDEQELYRVKVNEFTPNLRYCAYNIGGGGGASKMDDL-LELRAQG--------LLENLDLLVSQTKMESSEGLQTIEWRNRKVTVRPEKVRLFLLSIQEVDKSLE 297 The following BLAST results are available for this feature:
BLAST of EWM24809.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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