EWM24822.1, cds5851 (CDS) Nannochloropsis gaditana

Overview
NameEWM24822.1
Unique Namecds5851
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:1020944..1021006 -
Alignment locationCM002466.1:1020798..1020826 -
Alignment locationCM002466.1:1020599..1020728 -
Alignment locationCM002466.1:1019991..1020504 -
Alignment locationCM002466.1:1019808..1019884 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24822.1
Productcbs domain multi-pass transmembrane
Orig transcript idgnl|cribi|Naga_101736g1.9853.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:1020944..1021006 -
CM002466.1supercontigCM002466.1:1020798..1020826 -
CM002466.1supercontigCM002466.1:1020599..1020728 -
CM002466.1supercontigCM002466.1:1019991..1020504 -
CM002466.1supercontigCM002466.1:1019808..1019884 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002550DUF21
Homology
BLAST of EWM24822.1 vs. NCBI_GenBank
Match: gi|585106417|gb|EWM24822.1| (cbs domain multi-pass transmembrane [Nannochloropsis gaditana])

HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0
Query:    1 MVLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKRRNISIVSSGPGRSNSNGTHASAHAYMTASSATSARAGLLSLSHPTQDLGVGSQGAGGKKGGSARPLCPPYLPSSPLPTLLDRLRAGVCVPLLTSRPSRIVLGVRAPRVHGHYWPMCGLLPSQTTSLYPSLLPLFPSLFRRESAPTGPCREGRAPLARRGGHRGGGLEDRLQDCAGLPGAHGEGLLPFDAGRS 270
            MVLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKRRNISIVSSGPGRSNSNGTHASAHAYMTASSATSARAGLLSLSHPTQDLGVGSQGAGGKKGGSARPLCPPYLPSSPLPTLLDRLRAGVCVPLLTSRPSRIVLGVRAPRVHGHYWPMCGLLPSQTTSLYPSLLPLFPSLFRRESAPTGPCREGRAPLARRGGHRGGGLEDRLQDCAGLPGAHGEGLLPFDAGRS
Sbjct:    1 MVLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKRRNISIVSSGPGRSNSNGTHASAHAYMTASSATSARAGLLSLSHPTQDLGVGSQGAGGKKGGSARPLCPPYLPSSPLPTLLDRLRAGVCVPLLTSRPSRIVLGVRAPRVHGHYWPMCGLLPSQTTSLYPSLLPLFPSLFRRESAPTGPCREGRAPLARRGGHRGGGLEDRLQDCAGLPGAHGEGLLPFDAGRS 270          
BLAST of EWM24822.1 vs. NCBI_GenBank
Match: gi|585106418|gb|EWM24823.1| (cbs domain multi-pass transmembrane [Nannochloropsis gaditana])

HSP 1 Score: 483.797 bits (1244), Expect = 1.226e-170
Identity = 247/251 (98.41%), Postives = 248/251 (98.80%), Query Frame = 0
Query:    1 MVLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKRRNISIVSSGPGRSNSNGTHASAHAYMTASSATSARAGLLSLSHPTQDLGVGSQGAGGKKGGSARPLCPPYLPSSPLPTLLDRLRAGVCVPLLTSRPSRIVLGVRAPRVHGHYWPMCGLLPSQTTSLYPSLLPLFPSLFRRESAPTGPCREGRAPLARRGGHRGGGLE--DRLQ 249
            MVLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKRRNISIVSSGPGRSNSNGTHASAHAYMTASSATSARAGLLSLSHPTQDLGVGSQGAGGKKGGSARPLCPPYLPSSPLPTLLDRLRAGVCVPLLTSRPSRIVLGVRAPRVHGHYWPMCGLLPSQTTSLYPSLLPLFPSLFRRESAPTGPCREGRAPLARRGGHRGGGLE  D +Q
Sbjct:    1 MVLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKRRNISIVSSGPGRSNSNGTHASAHAYMTASSATSARAGLLSLSHPTQDLGVGSQGAGGKKGGSARPLCPPYLPSSPLPTLLDRLRAGVCVPLLTSRPSRIVLGVRAPRVHGHYWPMCGLLPSQTTSLYPSLLPLFPSLFRRESAPTGPCREGRAPLARRGGHRGGGLEGDDHVQ 251          
BLAST of EWM24822.1 vs. NCBI_GenBank
Match: gi|298711109|emb|CBJ32337.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.5153 bits (236), Expect = 1.319e-18
Identity = 42/82 (51.22%), Postives = 62/82 (75.61%), Query Frame = 0
Query:    1 MVLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKRRNIS 82
            +VL FGEI PSA+F+G NQL IA+ M+  V+ LM+VL P+++P++W+LDR  G     KRYNRAE+SAL+E+ QE+   +++
Sbjct:  301 LVLFFGEIFPSAVFTGKNQLAIASGMSWLVYTLMMVLGPVAWPIAWMLDRVLGIEG-FKRYNRAEISALVEVQQELSCEDVT 381          
BLAST of EWM24822.1 vs. NCBI_GenBank
Match: gi|553194197|ref|XP_005855903.1| (magnesium and cobalt efflux protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293147|gb|EKU20447.1| magnesium and cobalt efflux protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 92.8189 bits (229), Expect = 8.709e-18
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 0
Query:    2 VLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGS-HNPRKRYNRAELSALIEIHQEVKR 78
            VL FGEI PSA+F GPNQLK+ +RM   VW L+    PI+ P++W LDRF G  H   KRY+R ELSAL+EIH + +R
Sbjct:  299 VLFFGEIFPSAIFMGPNQLKLGSRMTPVVWCLICFFFPIACPIAWCLDRFLGDEHGHGKRYSREELSALMEIHLKQRR 376          
BLAST of EWM24822.1 vs. NCBI_GenBank
Match: gi|585100593|gb|EWM20734.1| (protein of unknown function DUF21 [Nannochloropsis gaditana])

HSP 1 Score: 93.2041 bits (230), Expect = 8.779e-18
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 0
Query:    2 VLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGS-HNPRKRYNRAELSALIEIHQEVKR 78
            VL FGEI PSA+F GPNQLK+ +RM   VW L+    PI+ P++W LDRF G  H   KRY+R ELSAL+EIH + +R
Sbjct:  314 VLFFGEIFPSAIFMGPNQLKLGSRMTPVVWCLICFFFPIACPIAWCLDRFLGDEHGHGKRYSREELSALMEIHLKQRR 391          
BLAST of EWM24822.1 vs. NCBI_GenBank
Match: gi|585108725|gb|EWM26637.1| (protein mam3 [Nannochloropsis gaditana])

HSP 1 Score: 91.6633 bits (226), Expect = 2.730e-17
Identity = 41/75 (54.67%), Postives = 58/75 (77.33%), Query Frame = 0
Query:    2 VLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEV 76
            +LIFGEI+PSA+F+GPNQ+ +AA  + FV+FLM V  PI+YP+  +LD++ G HN  KRY R ELS L+++ +EV
Sbjct:  114 ILIFGEIIPSAIFTGPNQIIMAAHFSGFVYFLMGVFWPIAYPIGKVLDKWLG-HNSFKRYTREELSTLVDLQREV 187          
BLAST of EWM24822.1 vs. NCBI_GenBank
Match: gi|325180719|emb|CCA15125.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 90.1225 bits (222), Expect = 8.049e-17
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = 0
Query:    2 VLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKR 78
            VL+FGEILPSA+F+GP QL+IAA ++  V FLM++ SPISYPLS +LD  FG  +  ++Y R EL ALI + +E ++
Sbjct:  114 VLLFGEILPSAIFTGPQQLQIAASLSPLVKFLMIITSPISYPLSKVLDYCFGDDHALQKYKRNELKALIALQKESQQ 190          
BLAST of EWM24822.1 vs. NCBI_GenBank
Match: gi|635362998|emb|CCI48374.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 89.3521 bits (220), Expect = 1.525e-16
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = 0
Query:    2 VLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKR 78
            VL+FGEILPSA+F+GP QL+IAA ++  V FLM+V SPISYP+S +LD  FG  +  ++Y R EL ALI + +E ++
Sbjct:  114 VLLFGEILPSAIFTGPQQLQIAAFLSPLVKFLMIVTSPISYPISKVLDYCFGDDHALQKYKRNELKALIALQKESQQ 190          
BLAST of EWM24822.1 vs. NCBI_GenBank
Match: gi|953495615|emb|CEG42511.1| (hypothetical protein L916_03792 [Plasmopara halstedii])

HSP 1 Score: 87.8113 bits (216), Expect = 4.366e-16
Identity = 50/119 (42.02%), Postives = 72/119 (60.50%), Query Frame = 0
Query:    2 VLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQE--VKRRNISIVSSGPGRSNSNGTHASAHAYMTASSATSARAGLLS 118
            VL+FGEI+PSA+F+GPNQL+IAA +  FV  LM +  PI+YP+S +LD + G  +   +Y R E+ AL+ + +E    RR+ +       R +   TH+ A   MT  SA S R  LL+
Sbjct:   81 VLLFGEIIPSAVFTGPNQLRIAAILCPFVKVLMAITFPIAYPISRVLDMWLGDDHDPAQYKRKEIKALVTLQRENDAARRSFADHLRQSQRLHDTPTHSQA---MTTMSAISDRQPLLT 196          
BLAST of EWM24822.1 vs. NCBI_GenBank
Match: gi|1134882385|gb|OMJ79971.1| (hypothetical protein SteCoe_19889 [Stentor coeruleus])

HSP 1 Score: 85.1149 bits (209), Expect = 2.424e-15
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 0
Query:    2 VLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFGSHNPRKRYNRAELSALIEIHQEVKRRNISIVSSGPGRSNSNGTHAS 99
            VL+FGE+LP AL +GP+QLKIA+ +   V  L++VL PISYP++ LLD FFG H   K+    +L  LI +H    ++N     SG      N  H +
Sbjct:  121 VLVFGEVLPQALCTGPDQLKIASNLCPMVRLLIIVLFPISYPIAKLLDYFFGHHQKVKKLRNEDLKTLITLHHSFAKKNEERSYSGLVTGQINIIHGT 218          
The following BLAST results are available for this feature:
BLAST of EWM24822.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106417|gb|EWM24822.1|0.000e+0100.00cbs domain multi-pass transmembrane [Nannochlorops... [more]
gi|585106418|gb|EWM24823.1|1.226e-17098.41cbs domain multi-pass transmembrane [Nannochlorops... [more]
gi|298711109|emb|CBJ32337.1|1.319e-1851.22conserved unknown protein [Ectocarpus siliculosus][more]
gi|553194197|ref|XP_005855903.1|8.709e-1856.41magnesium and cobalt efflux protein, partial [Nann... [more]
gi|585100593|gb|EWM20734.1|8.779e-1856.41protein of unknown function DUF21 [Nannochloropsis... [more]
gi|585108725|gb|EWM26637.1|2.730e-1754.67protein mam3 [Nannochloropsis gaditana][more]
gi|325180719|emb|CCA15125.1|8.049e-1754.55conserved hypothetical protein [Albugo laibachii N... [more]
gi|635362998|emb|CCI48374.1|1.525e-1654.55unnamed protein product [Albugo candida][more]
gi|953495615|emb|CEG42511.1|4.366e-1642.02hypothetical protein L916_03792 [Plasmopara halste... [more]
gi|1134882385|gb|OMJ79971.1|2.424e-1542.86hypothetical protein SteCoe_19889 [Stentor coerule... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5866rna5866Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications