EWM24848.1, cds5824 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM24848.1
Unique Name	cds5824
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002466.1:965366..965599 +
Alignment location	CM002466.1:965767..966198 +

Link to JBrowse

Properties


Property Name	Value
Start range	965366
Start range	.
Protein id	EWM24848.1
Product	hypothetical protein
Partial	true
Orig transcript id	gnl\|cribi\|Naga_100866g1.1199.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:965366..965599 +
CM002466.1	supercontig	CM002466.1:965767..966198 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM24848.1 vs. NCBI_GenBank
Match: gi|585106449|gb|EWM24848.1| (hypothetical protein Naga_100866g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 427.557 bits (1098), Expect = 4.415e-151
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0

Query:    1 FPPFPPFLLVLSPLPVLTPSMHRATAIRTPRFDTKPSTPPPPPSLPSSSVQRHAGEEVGPHPEGWEEALARMEEEKLKRDQHMAAVQPGHAAHSSLPSSLPSSRPPSSSPGVCEESLVPREYIEWVDAWLHMLLDGRAPGREGGREGRREGRKRKGPLSRKAGKGSQKVSEHRNGSRKREVVGGLACLLLSSFPPSRPPSLLPTFHPSLSPSRKPSVSLSP 221
            FPPFPPFLLVLSPLPVLTPSMHRATAIRTPRFDTKPSTPPPPPSLPSSSVQRHAGEEVGPHPEGWEEALARMEEEKLKRDQHMAAVQPGHAAHSSLPSSLPSSRPPSSSPGVCEESLVPREYIEWVDAWLHMLLDGRAPGREGGREGRREGRKRKGPLSRKAGKGSQKVSEHRNGSRKREVVGGLACLLLSSFPPSRPPSLLPTFHPSLSPSRKPSVSLSP
Sbjct:    1 FPPFPPFLLVLSPLPVLTPSMHRATAIRTPRFDTKPSTPPPPPSLPSSSVQRHAGEEVGPHPEGWEEALARMEEEKLKRDQHMAAVQPGHAAHSSLPSSLPSSRPPSSSPGVCEESLVPREYIEWVDAWLHMLLDGRAPGREGGREGRREGRKRKGPLSRKAGKGSQKVSEHRNGSRKREVVGGLACLLLSSFPPSRPPSLLPTFHPSLSPSRKPSVSLSP 221

The following BLAST results are available for this feature:

BLAST of EWM24848.1 vs. NCBI_GenBank

BLAST of EWM24848.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585106449\|gb\|EWM24848.1\|	4.415e-151	100.00	hypothetical protein Naga_100866g1, partial [Nanno...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5839	rna5839	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications