EWM24860.1, cds5810 (CDS) Nannochloropsis gaditana

Overview
NameEWM24860.1
Unique Namecds5810
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:940370..941698 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24860.1
ProductUbiquitin supergroup
Orig transcript idgnl|cribi|Naga_100381g1.8975.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:940370..941698 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
IPR022617Rad60/SUMO-like_dom
Homology
BLAST of EWM24860.1 vs. NCBI_GenBank
Match: gi|585106470|gb|EWM24860.1| (Ubiquitin supergroup [Nannochloropsis gaditana])

HSP 1 Score: 890.567 bits (2300), Expect = 0.000e+0
Identity = 442/442 (100.00%), Postives = 442/442 (100.00%), Query Frame = 0
Query:    1 MAAPGSEVSSDGGFEQRSETEEEVLDGGGIFTYKPVAYALGRRGKDAVDGMSESSSSDDEDDDDVRPVSPRRPGRDKGPKRGRECLSSTDSLSSPSKRPPPVVEIESDESDDDGVVLLVTTNGKHREKTEASGRGASDEEEDVDIGRYLDGDIQEEELTTLQPAATGGKRRGKGPNGTGNGRPMLATGTRVGSCPNGRTSVPGLGAPPAAVDVTAEEEMTAQPHAKARLEALRADTLRMGAALRANVTVEVEDLVDTASVARETGLQKATTTEDKVMLKVGMQGRQLQPFRVYTYSMLSDVFDAYARIKGLRSEDLTFSYQGMELEGFDQPRYVGMVAGDDPSAAGNIIYVQDRAALAAKTAQALAASKTVNLVLQWQGGQENVSMKMQGSFGELKKTMAAKKGVDVATVRFVFDGVTLSAETTPEQLEMEDEDTVDVYGLS 442
            MAAPGSEVSSDGGFEQRSETEEEVLDGGGIFTYKPVAYALGRRGKDAVDGMSESSSSDDEDDDDVRPVSPRRPGRDKGPKRGRECLSSTDSLSSPSKRPPPVVEIESDESDDDGVVLLVTTNGKHREKTEASGRGASDEEEDVDIGRYLDGDIQEEELTTLQPAATGGKRRGKGPNGTGNGRPMLATGTRVGSCPNGRTSVPGLGAPPAAVDVTAEEEMTAQPHAKARLEALRADTLRMGAALRANVTVEVEDLVDTASVARETGLQKATTTEDKVMLKVGMQGRQLQPFRVYTYSMLSDVFDAYARIKGLRSEDLTFSYQGMELEGFDQPRYVGMVAGDDPSAAGNIIYVQDRAALAAKTAQALAASKTVNLVLQWQGGQENVSMKMQGSFGELKKTMAAKKGVDVATVRFVFDGVTLSAETTPEQLEMEDEDTVDVYGLS
Sbjct:    1 MAAPGSEVSSDGGFEQRSETEEEVLDGGGIFTYKPVAYALGRRGKDAVDGMSESSSSDDEDDDDVRPVSPRRPGRDKGPKRGRECLSSTDSLSSPSKRPPPVVEIESDESDDDGVVLLVTTNGKHREKTEASGRGASDEEEDVDIGRYLDGDIQEEELTTLQPAATGGKRRGKGPNGTGNGRPMLATGTRVGSCPNGRTSVPGLGAPPAAVDVTAEEEMTAQPHAKARLEALRADTLRMGAALRANVTVEVEDLVDTASVARETGLQKATTTEDKVMLKVGMQGRQLQPFRVYTYSMLSDVFDAYARIKGLRSEDLTFSYQGMELEGFDQPRYVGMVAGDDPSAAGNIIYVQDRAALAAKTAQALAASKTVNLVLQWQGGQENVSMKMQGSFGELKKTMAAKKGVDVATVRFVFDGVTLSAETTPEQLEMEDEDTVDVYGLS 442          
BLAST of EWM24860.1 vs. NCBI_GenBank
Match: gi|553179938|ref|XP_005852790.1| (small ubiquitin-like modifier-1 [Nannochloropsis gaditana CCMP526] >gi|422295742|gb|EKU23041.1| small ubiquitin-like modifier-1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 874.004 bits (2257), Expect = 0.000e+0
Identity = 435/442 (98.42%), Postives = 437/442 (98.87%), Query Frame = 0
Query:    1 MAAPGSEVSSDGGFEQRSETEEEVLDGGGIFTYKPVAYALGRRGKDAVDGMSESSSSDDEDDDDVRPVSPRRPGRDKGPKRGRECLSSTDSLSSPSKRPPPVVEIESDESDDDGVVLLVTTNGKHREKTEASGRGASDEEEDVDIGRYLDGDIQEEELTTLQPAATGGKRRGKGPNGTGNGRPMLATGTRVGSCPNGRTSVPGLGAPPAAVDVTAEEEMTAQPHAKARLEALRADTLRMGAALRANVTVEVEDLVDTASVARETGLQKATTTEDKVMLKVGMQGRQLQPFRVYTYSMLSDVFDAYARIKGLRSEDLTFSYQGMELEGFDQPRYVGMVAGDDPSAAGNIIYVQDRAALAAKTAQALAASKTVNLVLQWQGGQENVSMKMQGSFGELKKTMAAKKGVDVATVRFVFDGVTLSAETTPEQLEMEDEDTVDVYGLS 442
            MAAPGSEVSSDGGFEQRSETEEEVLDGGGIFTYKPVAYALGRRGKDAVDG SESSSSDDEDD+DVRPV PRRPGRDKGPKRGRECLSSTDSLSSPSKRPPPVVEIESDESDDDGVVLLVTTNGKHREKTEASGRGASDEEEDVDIGRYLDGDIQEEELTTLQPAATGGKRRGKGPNGTGNGRPMLATGTRVGSCPNGRTSVPGLGAPPAAVDVTAEEEMTAQPHAKARLEALRADTL MGAALRANVTVEVEDLVDTASVARETG QKATTTEDKVMLKVGMQGRQLQPFRVYTYSMLSDVFDAYARIKGLRSEDLTFSYQGMELEGFDQPRYVGMVAGDDP AAGNI+YVQDRAALAAKTAQALAASKTVNLVLQWQGGQENVSMKMQGSFGELKKTMAAKKGVDVATVRFVFDGVTLSAETTPEQLEMEDEDTVDVYGLS
Sbjct:    1 MAAPGSEVSSDGGFEQRSETEEEVLDGGGIFTYKPVAYALGRRGKDAVDGTSESSSSDDEDDNDVRPVFPRRPGRDKGPKRGRECLSSTDSLSSPSKRPPPVVEIESDESDDDGVVLLVTTNGKHREKTEASGRGASDEEEDVDIGRYLDGDIQEEELTTLQPAATGGKRRGKGPNGTGNGRPMLATGTRVGSCPNGRTSVPGLGAPPAAVDVTAEEEMTAQPHAKARLEALRADTLLMGAALRANVTVEVEDLVDTASVARETGPQKATTTEDKVMLKVGMQGRQLQPFRVYTYSMLSDVFDAYARIKGLRSEDLTFSYQGMELEGFDQPRYVGMVAGDDPRAAGNIVYVQDRAALAAKTAQALAASKTVNLVLQWQGGQENVSMKMQGSFGELKKTMAAKKGVDVATVRFVFDGVTLSAETTPEQLEMEDEDTVDVYGLS 442          
BLAST of EWM24860.1 vs. NCBI_GenBank
Match: gi|557129139|pdb|4BKG|A (Chain A, Crystal Structure Of Human Disumo-2)

HSP 1 Score: 66.2402 bits (160), Expect = 2.699e-9
Identity = 47/172 (27.33%), Postives = 77/172 (44.77%), Query Frame = 0
Query:  269 ATTTEDKVMLKVGMQGRQLQPFRVYTYSMLSDVFDAYARIKGLRSEDLTFSYQGMELEGFDQPRYVGMVAGDDPSAAGNIIYVQDRAALAAKTAQALAASKTVNLVLQWQGGQE-NVSMKMQGSFGELKKTMAAKKGVDVATVRFVFDGVTLSAETTPEQLEMEDEDTVDVY 439
            +T   D + LKV  Q   +  F++  ++ LS +  AY   +GL    + F + G  +   D P  + M   D       I   Q +        ++   +  +NL +  Q G      +K      +L K    ++G+ +  +RF FDG  ++   TP QLEMEDEDT+DV+
Sbjct:    2 STENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDED------TIDVFQQQTG-----GRSTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 162          
BLAST of EWM24860.1 vs. NCBI_GenBank
Match: gi|146446849|gb|ABQ41279.1| (SUMO-1-like protein [Artemia franciscana])

HSP 1 Score: 58.5362 bits (140), Expect = 2.429e-7
Identity = 30/75 (40.00%), Postives = 49/75 (65.33%), Query Frame = 0
Query:  366 AASKTVNLVLQWQGGQE-NVSMKMQGSFGELKKTMAAKKGVDVATVRFVFDGVTLSAETTPEQLEMEDEDTVDVY 439
            A S+ + L +  Q   E +  +KM    G+LKK+ + + GV V ++RF+FDG  ++ E TP+QLEME++D ++VY
Sbjct:   11 ANSEYIKLKVVGQDSNEIHFRVKMTTQMGKLKKSYSERVGVPVNSLRFLFDGRRINDEETPKQLEMENDDVIEVY 85          
BLAST of EWM24860.1 vs. NCBI_GenBank
Match: gi|321462723|gb|EFX73744.1| (hypothetical protein DAPPUDRAFT_231336 [Daphnia pulex])

HSP 1 Score: 58.151 bits (139), Expect = 3.790e-7
Identity = 29/75 (38.67%), Postives = 49/75 (65.33%), Query Frame = 0
Query:  366 AASKTVNLVLQWQGGQE-NVSMKMQGSFGELKKTMAAKKGVDVATVRFVFDGVTLSAETTPEQLEMEDEDTVDVY 439
            A S+ + L +  Q   E +  +KM    G+LKK+ + + GV V ++RF+FDG  ++ + TP+QLEME++D ++VY
Sbjct:   12 AGSEYIKLKVVGQDSNEIHFRVKMTTQMGKLKKSYSERVGVPVTSLRFLFDGRRINDDETPKQLEMENDDVIEVY 86          
BLAST of EWM24860.1 vs. NCBI_GenBank
Match: gi|1009553001|ref|XP_015911935.1| (small ubiquitin-related modifier-like [Parasteatoda tepidariorum])

HSP 1 Score: 57.7658 bits (138), Expect = 4.219e-7
Identity = 24/54 (44.44%), Postives = 41/54 (75.93%), Query Frame = 0
Query:  386 MKMQGSFGELKKTMAAKKGVDVATVRFVFDGVTLSAETTPEQLEMEDEDTVDVY 439
            +KM    G+LKK+ + ++GV V ++RF+FDG  ++ + TP+QLEME++D ++VY
Sbjct:   32 VKMTTQMGKLKKSYSDRQGVPVTSLRFLFDGRRINDDETPKQLEMENDDVIEVY 85          
BLAST of EWM24860.1 vs. NCBI_GenBank
Match: gi|1158591306|ref|XP_020303815.1| (SMO-1 protein [Loa loa] >gi|307767772|gb|EFO27006.1| SMO-1 protein [Loa loa])

HSP 1 Score: 57.7658 bits (138), Expect = 6.728e-7
Identity = 29/75 (38.67%), Postives = 50/75 (66.67%), Query Frame = 0
Query:  366 AASKTVNLVLQWQGGQE-NVSMKMQGSFGELKKTMAAKKGVDVATVRFVFDGVTLSAETTPEQLEMEDEDTVDVY 439
            ++S+ + L +  Q   E +  +K   S G+LKK+ A + GVDV ++RF+FDG  ++ E TP+ LE+E++D ++VY
Sbjct:   25 SSSEYIKLRVVGQDSNEVHFRVKFGTSMGKLKKSYADRMGVDVGSLRFLFDGRRINDEDTPKTLEIEEDDIIEVY 99          
BLAST of EWM24860.1 vs. NCBI_GenBank
Match: gi|170591492|ref|XP_001900504.1| (Ubiquitin-like protein SMT3 [Brugia malayi] >gi|402586171|gb|EJW80109.1| SUMO protein [Wuchereria bancrofti] >gi|671406892|emb|CDP99981.1| Bm13906, isoform a [Brugia malayi] >gi|909102240|emb|CRZ26331.1| Bm5017 [Brugia malayi])

HSP 1 Score: 57.7658 bits (138), Expect = 8.015e-7
Identity = 29/75 (38.67%), Postives = 50/75 (66.67%), Query Frame = 0
Query:  366 AASKTVNLVLQWQGGQE-NVSMKMQGSFGELKKTMAAKKGVDVATVRFVFDGVTLSAETTPEQLEMEDEDTVDVY 439
            ++S+ + L +  Q   E +  +K   S G+LKK+ A + GVDV ++RF+FDG  ++ E TP+ LE+E++D ++VY
Sbjct:   25 SSSEYIKLRVVGQDSNEVHFRVKFGTSMGKLKKSYADRMGVDVGSLRFLFDGRRINDEDTPKTLEIEEDDIIEVY 99          
BLAST of EWM24860.1 vs. NCBI_GenBank
Match: gi|957847572|ref|XP_014674276.1| (PREDICTED: small ubiquitin-related modifier 1-like [Priapulus caudatus])

HSP 1 Score: 56.9954 bits (136), Expect = 8.796e-7
Identity = 24/60 (40.00%), Postives = 44/60 (73.33%), Query Frame = 0
Query:  380 GQENVSMKMQGSFGELKKTMAAKKGVDVATVRFVFDGVTLSAETTPEQLEMEDEDTVDVY 439
            G+ +  +KM  + G+LKK+ + + G+  +++RF+FDG  ++ + TP+QLEME+ED ++VY
Sbjct:   29 GEIHFKVKMTTNLGKLKKSYSERVGMPASSLRFLFDGRRINDDDTPKQLEMENEDVIEVY 88          
BLAST of EWM24860.1 vs. NCBI_GenBank
Match: gi|238816825|gb|ACR56783.1| (small ubiquitin-like modifier-1 [Litopenaeus vannamei] >gi|294860898|gb|ADF45345.1| small ubiquitin-related modifier protein [Eriocheir sinensis] >gi|310788575|gb|ADP24260.1| small ubiquitin-like modifier-1 [Scylla paramamosain] >gi|320382442|gb|ADW27186.1| small ubiquitin-like modifier-1 [Eriocheir sinensis] >gi|410466227|gb|AFV69239.1| small ubiquitin-like modifier SUMO [Procambarus clarkii] >gi|569344082|gb|AHE40942.1| small ubiquitin-like modifier 1 [Fenneropenaeus chinensis])

HSP 1 Score: 56.9954 bits (136), Expect = 9.116e-7
Identity = 25/57 (43.86%), Postives = 41/57 (71.93%), Query Frame = 0
Query:  383 NVSMKMQGSFGELKKTMAAKKGVDVATVRFVFDGVTLSAETTPEQLEMEDEDTVDVY 439
            +  +KM    G+LKK+ + + GV VA++RF+FDG  ++ E TP+ LEME++D ++VY
Sbjct:   30 HFRVKMTTQMGKLKKSYSERVGVPVASLRFLFDGRRINDEETPKALEMENDDVIEVY 86          
The following BLAST results are available for this feature:
BLAST of EWM24860.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106470|gb|EWM24860.1|0.000e+0100.00Ubiquitin supergroup [Nannochloropsis gaditana][more]
gi|553179938|ref|XP_005852790.1|0.000e+098.42small ubiquitin-like modifier-1 [Nannochloropsis g... [more]
gi|557129139|pdb|4BKG|A2.699e-927.33Chain A, Crystal Structure Of Human Disumo-2[more]
gi|146446849|gb|ABQ41279.1|2.429e-740.00SUMO-1-like protein [Artemia franciscana][more]
gi|321462723|gb|EFX73744.1|3.790e-738.67hypothetical protein DAPPUDRAFT_231336 [Daphnia pu... [more]
gi|1009553001|ref|XP_015911935.1|4.219e-744.44small ubiquitin-related modifier-like [Parasteatod... [more]
gi|1158591306|ref|XP_020303815.1|6.728e-738.67SMO-1 protein [Loa loa] >gi|307767772|gb|EFO27006.... [more]
gi|170591492|ref|XP_001900504.1|8.015e-738.67Ubiquitin-like protein SMT3 [Brugia malayi] >gi|40... [more]
gi|957847572|ref|XP_014674276.1|8.796e-740.00PREDICTED: small ubiquitin-related modifier 1-like... [more]
gi|238816825|gb|ACR56783.1|9.116e-743.86small ubiquitin-like modifier-1 [Litopenaeus vanna... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5825rna5825Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications