EWM24871.1, cds5803 (CDS) Nannochloropsis gaditana

Overview
NameEWM24871.1
Unique Namecds5803
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:917346..917531 -
Alignment locationCM002466.1:917110..917211 -
Alignment locationCM002466.1:916753..916911 -
Alignment locationCM002466.1:916483..916584 -
Alignment locationCM002466.1:915917..916276 -

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Properties
Property NameValue
Protein idEWM24871.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101325g2.7216.mrna
GbkeyCDS
End range.
End range917531
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:917346..917531 -
CM002466.1supercontigCM002466.1:917110..917211 -
CM002466.1supercontigCM002466.1:916753..916911 -
CM002466.1supercontigCM002466.1:916483..916584 -
CM002466.1supercontigCM002466.1:915917..916276 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24871.1 vs. NCBI_GenBank
Match: gi|585106489|gb|EWM24871.1| (hypothetical protein Naga_101325g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 604.749 bits (1558), Expect = 0.000e+0
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0 
Query:    1 LLPPSLPPSLPPFPPACRPLLPSISLLTLFPPSSSVCRQVDLRWDVFLGTYYYWRLIKGVPLVPWGFIVPEEAPWPFFCRGVELGKMCDMIRRHQEVFFRYYPERVQTLEYFGWKWWWPSMEEGEEPEAPQAYNRYNNFEGMDLVLKLKFVDPEILSDAEVPDFEALQKEVPEAIPWREQDHRVGSESILEDEQAPTDIFFVPGLRRHQRRQARLAGKGKTVGGAEAAGMNGGKEGGGEGGREEGLPEKKTRGRKVGSGAGGKRKGKKEGGGEEGEEVTGTSAKVGGTTGPKKRGRKPKVVE 302
            LLPPSLPPSLPPFPPACRPLLPSISLLTLFPPSSSVCRQVDLRWDVFLGTYYYWRLIKGVPLVPWGFIVPEEAPWPFFCRGVELGKMCDMIRRHQEVFFRYYPERVQTLEYFGWKWWWPSMEEGEEPEAPQAYNRYNNFEGMDLVLKLKFVDPEILSDAEVPDFEALQKEVPEAIPWREQDHRVGSESILEDEQAPTDIFFVPGLRRHQRRQARLAGKGKTVGGAEAAGMNGGKEGGGEGGREEGLPEKKTRGRKVGSGAGGKRKGKKEGGGEEGEEVTGTSAKVGGTTGPKKRGRKPKVVE
Sbjct:    1 LLPPSLPPSLPPFPPACRPLLPSISLLTLFPPSSSVCRQVDLRWDVFLGTYYYWRLIKGVPLVPWGFIVPEEAPWPFFCRGVELGKMCDMIRRHQEVFFRYYPERVQTLEYFGWKWWWPSMEEGEEPEAPQAYNRYNNFEGMDLVLKLKFVDPEILSDAEVPDFEALQKEVPEAIPWREQDHRVGSESILEDEQAPTDIFFVPGLRRHQRRQARLAGKGKTVGGAEAAGMNGGKEGGGEGGREEGLPEKKTRGRKVGSGAGGKRKGKKEGGGEEGEEVTGTSAKVGGTTGPKKRGRKPKVVE 302
[Close]
BLAST of EWM24871.1 vs. NCBI_GenBank
Match: gi|676397611|ref|XP_009042083.1| (hypothetical protein AURANDRAFT_68204 [Aureococcus anophagefferens] >gi|323447276|gb|EGB03205.1| hypothetical protein AURANDRAFT_68204 [Aureococcus anophagefferens])

HSP 1 Score: 72.0182 bits (175), Expect = 2.178e-10
Identity = 33/84 (39.29%), Postives = 46/84 (54.76%), Query Frame = 0 
Query:   42 LRWDVFLGTYYYWRLIKGVPLVPWGFIVPEEAPWPFFCRGVELGKMCDMIRRHQEVFFRYYPERVQTLEYFGWKWWWPSMEEGE 125
            L+WD FL   +    IKG   V W F+VP+E PWPF  R   LG+  + +R  Q  F  ++ ER + L+  G++W  P  E GE
Sbjct:  592 LQWDAFLACLFSHSKIKGTVNVDWDFVVPDEDPWPFPLRASPLGRWVNEVRDQQRTFDAHFGERKRFLDLMGFQWLPPVFEAGE 675
The following BLAST results are available for this feature:
BLAST of EWM24871.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106489|gb|EWM24871.1|0.000e+0100.00hypothetical protein Naga_101325g2, partial [Nanno... [more]
gi|676397611|ref|XP_009042083.1|2.178e-1039.29hypothetical protein AURANDRAFT_68204 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5818rna5818Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications