EWM24878.1, cds5792 (CDS) Nannochloropsis gaditana

Overview
NameEWM24878.1
Unique Namecds5792
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:888749..888904 +
Alignment locationCM002466.1:888989..889456 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24878.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100265g5.8298.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:888749..888904 +
CM002466.1supercontigCM002466.1:888989..889456 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM24878.1 vs. NCBI_GenBank
Match: gi|585106503|gb|EWM24878.1| (hypothetical protein Naga_100265g5 [Nannochloropsis gaditana])

HSP 1 Score: 429.869 bits (1104), Expect = 1.955e-152
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0 
Query:    1 MVGLTKRKVQLGRRDFEGGGGTERSLGQNTETLQKQLYRHYNETSHLNVQWRHSLTRISLGLSAILTYRMYRQWGDTSTTNANTSSSWPSFLQMHGVEFLGVISGLAIAHYIHSPLPLTGGSYVLPWSFYAAFLCACLEIFAFYRHVVSNPEYTLHIDATLPVGALFFLFVWGADLMMGRSQREARLGLEASQRLGETVAPHRMKRE 207
            MVGLTKRKVQLGRRDFEGGGGTERSLGQNTETLQKQLYRHYNETSHLNVQWRHSLTRISLGLSAILTYRMYRQWGDTSTTNANTSSSWPSFLQMHGVEFLGVISGLAIAHYIHSPLPLTGGSYVLPWSFYAAFLCACLEIFAFYRHVVSNPEYTLHIDATLPVGALFFLFVWGADLMMGRSQREARLGLEASQRLGETVAPHRMKRE
Sbjct:    1 MVGLTKRKVQLGRRDFEGGGGTERSLGQNTETLQKQLYRHYNETSHLNVQWRHSLTRISLGLSAILTYRMYRQWGDTSTTNANTSSSWPSFLQMHGVEFLGVISGLAIAHYIHSPLPLTGGSYVLPWSFYAAFLCACLEIFAFYRHVVSNPEYTLHIDATLPVGALFFLFVWGADLMMGRSQREARLGLEASQRLGETVAPHRMKRE 207
[Close]
BLAST of EWM24878.1 vs. NCBI_GenBank
Match: gi|553180096|ref|XP_005853345.1| (hypothetical protein NGA_0723000, partial [Nannochloropsis gaditana CCMP526] >gi|422295717|gb|EKU23016.1| hypothetical protein NGA_0723000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 427.557 bits (1098), Expect = 5.965e-151
Identity = 206/207 (99.52%), Postives = 207/207 (100.00%), Query Frame = 0 
Query:    1 MVGLTKRKVQLGRRDFEGGGGTERSLGQNTETLQKQLYRHYNETSHLNVQWRHSLTRISLGLSAILTYRMYRQWGDTSTTNANTSSSWPSFLQMHGVEFLGVISGLAIAHYIHSPLPLTGGSYVLPWSFYAAFLCACLEIFAFYRHVVSNPEYTLHIDATLPVGALFFLFVWGADLMMGRSQREARLGLEASQRLGETVAPHRMKRE 207
            MVGLTKRKVQLGRRDFEGGGGTERSLGQNTETLQKQLYRHYNETSHLNVQWRHSLTRISLGLSAILTYRMYRQWGDTSTTNANTSSSWPSFLQMHGVEFLGVISGLAIAHYIHSPLPLTGGSYVLPWSFYAAFLCACLEIFAFYRHVVSNPEYTLHIDATLP+GALFFLFVWGADLMMGRSQREARLGLEASQRLGETVAPHRMKRE
Sbjct:   41 MVGLTKRKVQLGRRDFEGGGGTERSLGQNTETLQKQLYRHYNETSHLNVQWRHSLTRISLGLSAILTYRMYRQWGDTSTTNANTSSSWPSFLQMHGVEFLGVISGLAIAHYIHSPLPLTGGSYVLPWSFYAAFLCACLEIFAFYRHVVSNPEYTLHIDATLPMGALFFLFVWGADLMMGRSQREARLGLEASQRLGETVAPHRMKRE 247
The following BLAST results are available for this feature:
BLAST of EWM24878.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106503|gb|EWM24878.1|1.955e-152100.00hypothetical protein Naga_100265g5 [Nannochloropsi... [more]
gi|553180096|ref|XP_005853345.1|5.965e-15199.52hypothetical protein NGA_0723000, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5807rna5807Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications