EWM24885.1, cds5788 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM24885.1
Unique Name	cds5788
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002466.1:877248..877493 -
Alignment location	CM002466.1:876683..877150 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM24885.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100265g10.8305.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:877248..877493 -
CM002466.1	supercontig	CM002466.1:876683..877150 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM24885.1 vs. NCBI_GenBank
Match: gi|585106510|gb|EWM24885.1| (hypothetical protein Naga_100265g10 [Nannochloropsis gaditana])

HSP 1 Score: 476.863 bits (1226), Expect = 3.823e-170
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0

Query:    1 MQHSTTWSACTAHATQKYSSQRRGRQKARLDRSCCSLLIFVAFCAPAPSEAFQIFPCIPYTAPAQLKTSRHTVPEHSLSRRMASSLLLRHWINPSRTSETATPTASPTTSPPPSSPSAPSAVKLPSADATNLTYDRKIVGKEVMFKASKSAECEVVRMDGTSHRRVGVKGGRSRCFMRVGARDSCPYPPLDLTLVFHPCLFLALTLTFRRKACAPSKTTWPSRPPSTLCSTPTPSSA 237
            MQHSTTWSACTAHATQKYSSQRRGRQKARLDRSCCSLLIFVAFCAPAPSEAFQIFPCIPYTAPAQLKTSRHTVPEHSLSRRMASSLLLRHWINPSRTSETATPTASPTTSPPPSSPSAPSAVKLPSADATNLTYDRKIVGKEVMFKASKSAECEVVRMDGTSHRRVGVKGGRSRCFMRVGARDSCPYPPLDLTLVFHPCLFLALTLTFRRKACAPSKTTWPSRPPSTLCSTPTPSSA
Sbjct:    1 MQHSTTWSACTAHATQKYSSQRRGRQKARLDRSCCSLLIFVAFCAPAPSEAFQIFPCIPYTAPAQLKTSRHTVPEHSLSRRMASSLLLRHWINPSRTSETATPTASPTTSPPPSSPSAPSAVKLPSADATNLTYDRKIVGKEVMFKASKSAECEVVRMDGTSHRRVGVKGGRSRCFMRVGARDSCPYPPLDLTLVFHPCLFLALTLTFRRKACAPSKTTWPSRPPSTLCSTPTPSSA 237

The following BLAST results are available for this feature:

BLAST of EWM24885.1 vs. NCBI_GenBank

BLAST of EWM24885.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585106510\|gb\|EWM24885.1\|	3.823e-170	100.00	hypothetical protein Naga_100265g10 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5803	rna5803	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications