EWM24910.1, cds5763 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|585106538|gb|EWM24910.1| (ribulose-phosphate 3-epimerase [Nannochloropsis gaditana]) HSP 1 Score: 541.962 bits (1395), Expect = 0.000e+0 Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0
Query: 1 MARLSLLACAGVAALATVAHGFVPPVPRSYTRGRMAMAAKKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266
MARLSLLACAGVAALATVAHGFVPPVPRSYTRGRMAMAAKKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ
Sbjct: 1 MARLSLLACAGVAALATVAHGFVPPVPRSYTRGRMAMAAKKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|299469833|emb|CBN76687.1| (ribulose-phosphate 3-epimerase [Ectocarpus siliculosus]) HSP 1 Score: 405.986 bits (1042), Expect = 6.391e-141 Identity = 199/262 (75.95%), Postives = 217/262 (82.82%), Query Frame = 0
Query: 7 LACAGVAALATVAHGFVPPVPRSYTRGRMAMAA-----KKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELA 263
AC G + V V +T + MAA KKDFWIAPSILSAD AKLGQEVDN ++AGADIVHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVDRI+ DFA+AGASFITFHPEA+ H+DRTL LIKS GCK+GLVFNPATPL A++VLDKVDIILLMSVNPGFGGQSFIP TL KL+EARKMIDESGYDIRLEVDGG GVANIK+IAEAGAD FVAGSAI NPRT++ YK TID MR+ELA
Sbjct: 10 FACVGASQAFVVPTATVSGASTRHTSSSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELA 271
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|1210525101|dbj|GAX16293.1| (ribulose-phosphate 3-epimerase [Fistulifera solaris]) HSP 1 Score: 379.407 bits (973), Expect = 1.125e-130 Identity = 188/263 (71.48%), Postives = 217/263 (82.51%), Query Frame = 0
Query: 4 LSLLACAGVAALATVAHGFVPPVPRSYTRGRMAMAAKKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266
SL A G A+ TV+ PR+ T + + KD+ IAPSILSADFA+LG+EVDNVLAAGAD+VHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVD I DF AGAS+ITFHPEATNH+DR+LQLI++ GCK+GLVFNPAT L A++V+DK+DIILLMSVNPGFGGQ+FIP L K +EARK+IDE+G D RLE+DGGV V NI+++AEAG D VAGSAILK PRT +AYK TIDAMRAELAKV+
Sbjct: 6 FSLAALIGSASAFTVSQN----SPRTSTS--LNVWGDKDYLIAPSILSADFARLGEEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAAITDFIAAGASYITFHPEATNHVDRSLQLIRNGGCKAGLVFNPATSLDAAKYVIDKLDIILLMSVNPGFGGQAFIPAVLDKAREARKLIDEAGIDCRLEIDGGVKVDNIREVAEAGVDMMVAGSAILKEPRTMEAYKETIDAMRAELAKVK 262
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|1210525438|dbj|GAX15781.1| (ribulose-phosphate 3-epimerase [Fistulifera solaris]) HSP 1 Score: 379.407 bits (973), Expect = 1.175e-130 Identity = 188/263 (71.48%), Postives = 217/263 (82.51%), Query Frame = 0
Query: 4 LSLLACAGVAALATVAHGFVPPVPRSYTRGRMAMAAKKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266
SL A G A+ TV+ PR+ T + + KD+ IAPSILSADFA+LG+EVDNVLAAGAD+VHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVD I DF AGAS+ITFHPEATNH+DR+LQLI++ GCK+GLVFNPAT L A++V+DK+DIILLMSVNPGFGGQ+FIP L K +EARK+IDE+G D RLE+DGGV V NI+++AEAG D VAGSAILK PRT +AYK TIDAMRAELAKV+
Sbjct: 6 FSLAALFGSASAFTVSQN----SPRTSTS--LNVWGDKDYLIAPSILSADFARLGEEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAAITDFIAAGASYITFHPEATNHVDRSLQLIRNGGCKAGLVFNPATSLDAAKYVIDKLDIILLMSVNPGFGGQAFIPAVLDKAREARKLIDEAGIDCRLEIDGGVKVENIREVAEAGVDMMVAGSAILKEPRTMEAYKKTIDAMRAELAKVK 262
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|551670486|ref|XP_005838001.1| (Ribulose-5-phosphate 3-epimerase protein, plastid-targeted [Guillardia theta CCMP2712] >gi|428182159|gb|EKX51021.1| Ribulose-5-phosphate 3-epimerase protein, plastid-targeted [Guillardia theta CCMP2712]) HSP 1 Score: 377.867 bits (969), Expect = 6.849e-130 Identity = 179/226 (79.20%), Postives = 197/226 (87.17%), Query Frame = 0
Query: 41 KDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266
KD+ IAPSILSADFAKLGQEVDNVLAAGAD+VHFDVMDNHYVPNLTIGPMVCKALR+HGVTAPIDVHLMV PVDRII DF DAGAS+ITFHPEA+NHIDRTL +I+ GCK+GLV NPAT L ++V+DK+DIILLMSVNPGFGGQ FIP L+K KEARK+ID SGYDIRLE+DGGV V NIK +AE G D FVAGSAILK PRTQDAYK TID MR +LA +
Sbjct: 49 KDYLIAPSILSADFAKLGQEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALRNHGVTAPIDVHLMVQPVDRIIGDFIDAGASYITFHPEASNHIDRTLAMIRDGGCKAGLVLNPATSLDYCKYVMDKIDIILLMSVNPGFGGQKFIPSVLEKAKEARKLIDASGYDIRLEIDGGVTVDNIKQVAECGVDMFVAGSAILKEPRTQDAYKTTIDKMRQQLASAK 274
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|676396169|ref|XP_009041362.1| (hypothetical protein AURANDRAFT_69979 [Aureococcus anophagefferens] >gi|323448034|gb|EGB03938.1| hypothetical protein AURANDRAFT_69979 [Aureococcus anophagefferens]) HSP 1 Score: 375.555 bits (963), Expect = 7.114e-129 Identity = 180/242 (74.38%), Postives = 207/242 (85.54%), Query Frame = 0
Query: 25 PVPRSYTRGRMAMAAKKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266
P +S R + + KDF IAPSILSADFA+LG+EV N L+AGAD+VHFDVMDNHYVPNLTIGPMVC ALR HGVTAPIDVHLMVSPVDRI+ DFADAGAS+ITFHPEA+ H+DRTLQLI+ GCK+GLVFNPATPL + ++V+DKVDIILLMSVNPGFGGQSFIP TL K +EARK+ID SGYDIRLE+DGGV ANIK++AEAG D FVAGSAI ++PRT++ YK TIDAMR ELA +
Sbjct: 28 PAAKSSMRMEL-IEPDKDFLIAPSILSADFARLGEEVVNSLSAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVGDFADAGASYITFHPEASPHVDRTLQLIRGAGCKAGLVFNPATPLDILKYVMDKVDIILLMSVNPGFGGQSFIPATLDKAREARKLIDASGYDIRLEIDGGVSGANIKEVAEAGVDMFVAGSAIFRDPRTEEDYKVTIDAMRDELAAAK 268
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|676397475|ref|XP_009042015.1| (Ribulose-phosphate 3-epimerase [Aureococcus anophagefferens] >gi|323447374|gb|EGB03298.1| Ribulose-phosphate 3-epimerase [Aureococcus anophagefferens]) HSP 1 Score: 374.015 bits (959), Expect = 7.461e-129 Identity = 177/226 (78.32%), Postives = 201/226 (88.94%), Query Frame = 0
Query: 41 KDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266
KDF IAPSILSADFA+LG+EV N L+AGAD+VHFDVMDNHYVPNLTIGPMVC ALR HGVTAPIDVHLMVSPVDRI+ DFADAGAS+ITFHPEA+ H+DRTLQLI+ GCK+GLVFNPATPL + ++V+DKVDIILLMSVNPGFGGQSFIP TL K +EARK+ID SGYDIRLE+DGGV ANIK++AEAG D FVAGSAI ++PRT++ YK TIDAMR ELA +
Sbjct: 8 KDFLIAPSILSADFARLGEEVVNSLSAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVGDFADAGASYITFHPEASPHVDRTLQLIRGAGCKAGLVFNPATPLDILKYVMDKVDIILLMSVNPGFGGQSFIPATLDKAREARKLIDASGYDIRLEIDGGVSGANIKEVAEAGVDMFVAGSAIFRDPRTEEDYKVTIDAMRDELAAAK 233
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|1147537530|ref|WP_077242920.1| (ribulose-phosphate 3-epimerase [Oceanospirillum linum] >gi|1090719690|emb|SEF57846.1| ribulose-5-phosphate 3-epimerase [Oleiphilus messinensis] >gi|1151999683|gb|OOV88483.1| ribulose-phosphate 3-epimerase [Oceanospirillum linum]) HSP 1 Score: 372.089 bits (954), Expect = 2.159e-128 Identity = 180/226 (79.65%), Postives = 202/226 (89.38%), Query Frame = 0
Query: 41 KDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266
DF IAPSILSADFA+LG+EVDNVLA+GAD+VHFDVMDNHYVPNLTIGPMVCKALR+HGVTAPIDVHLMVSPVDR+I DF DAGAS+ITFHPEA++HIDR+L +I+ GCKSGLVFNPATPL +VLDKVD+ILLMSVNPGFGGQ FIP TL KL++ARK+IDESGYDIRLE+DGGVG+ NI++IAEAGAD FVAGSAI D YKATIDAMRAELAKV+
Sbjct: 2 SDFKIAPSILSADFARLGEEVDNVLASGADVVHFDVMDNHYVPNLTIGPMVCKALRNHGVTAPIDVHLMVSPVDRMISDFIDAGASWITFHPEASDHIDRSLSMIRDGGCKSGLVFNPATPLHYLDYVLDKVDMILLMSVNPGFGGQKFIPGTLDKLRQARKIIDESGYDIRLEIDGGVGIQNIREIAEAGADTFVAGSAIFNT----DDYKATIDAMRAELAKVE 223
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|223998756|ref|XP_002289051.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976159|gb|EED94487.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 373.244 bits (957), Expect = 3.852e-128 Identity = 182/239 (76.15%), Postives = 204/239 (85.36%), Query Frame = 0
Query: 27 PRSYTRGRMAMAAKKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKV 265
PR+ T + + KD+ IAPSILSA+FAKLG+EVDN+L AGAD+VHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVD I DF DAGAS+ITFHPEATNHIDR+LQLI++ GCK+GLVFNPAT L A HV DK+DIILLMSVNPGFGGQ+FIP TL K + ARK IDE+G D RLE+DGGV V NIK++AEAG D VAGSAILK PRT++AYK TIDAMR ELAKV
Sbjct: 25 PRATTS--LNVWGDKDYLIAPSILSANFAKLGEEVDNMLEAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAAIGDFIDAGASYITFHPEATNHIDRSLQLIRNGGCKAGLVFNPATSLDYAHHVKDKLDIILLMSVNPGFGGQAFIPATLDKARAARKFIDENGLDCRLEIDGGVKVDNIKEVAEAGVDMMVAGSAILKEPRTKEAYKVTIDAMREELAKV 261
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|1197232239|ref|WP_086480720.1| (ribulose-phosphate 3-epimerase [Oceanospirillum sp. AK56]) HSP 1 Score: 369.777 bits (948), Expect = 2.085e-127 Identity = 178/225 (79.11%), Postives = 202/225 (89.78%), Query Frame = 0
Query: 42 DFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266
DF IAPSILSADFA+LG+EVDNVLA+GAD+VHFDVMDNHYVPNLTIGPMVCKALR+HGVTAPIDVHLMVSPVDR+I DF DAGAS+ITFHPEA++HIDR+L +I+ GCKSGLVFNPATPL +VLDKVD++LLMSVNPGFGGQ FIP TL KL++ARK+IDESGYDIRLE+DGGVG+ NI++IAEAGAD FVAGSAI D YKATIDAMRAELA+V+
Sbjct: 3 DFKIAPSILSADFARLGEEVDNVLASGADVVHFDVMDNHYVPNLTIGPMVCKALRNHGVTAPIDVHLMVSPVDRMIGDFIDAGASWITFHPEASDHIDRSLSMIRDGGCKSGLVFNPATPLHYLDYVLDKVDVVLLMSVNPGFGGQKFIPGTLDKLRQARKIIDESGYDIRLEIDGGVGIQNIREIAEAGADTFVAGSAIFNT----DDYKATIDAMRAELAQVK 223 The following BLAST results are available for this feature:
BLAST of EWM24910.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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