EWM24910.1, cds5763 (CDS) Nannochloropsis gaditana

Overview
NameEWM24910.1
Unique Namecds5763
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:825815..826615 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24910.1
Productribulose-phosphate 3-epimerase
Orig transcript idgnl|cribi|Naga_100092g19.2133.mrna
GeneRPE
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:825815..826615 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0004750ribulose-phosphate 3-epimerase activity
GO:0016857racemase and epimerase activity, acting on carbohydrates and derivatives
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
Vocabulary: Biological Process
TermDefinition
GO:0009056catabolic process
GO:0006091generation of precursor metabolites and energy
GO:0008152metabolic process
GO:0006098pentose-phosphate shunt
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011060RibuloseP-bd_barrel
IPR026019Ribul_P_3_epim
IPR000056Ribul_P_3_epim-like
IPR013785Aldolase_TIM
Homology
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|585106538|gb|EWM24910.1| (ribulose-phosphate 3-epimerase [Nannochloropsis gaditana])

HSP 1 Score: 541.962 bits (1395), Expect = 0.000e+0
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0
Query:    1 MARLSLLACAGVAALATVAHGFVPPVPRSYTRGRMAMAAKKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266
            MARLSLLACAGVAALATVAHGFVPPVPRSYTRGRMAMAAKKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ
Sbjct:    1 MARLSLLACAGVAALATVAHGFVPPVPRSYTRGRMAMAAKKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266          
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|299469833|emb|CBN76687.1| (ribulose-phosphate 3-epimerase [Ectocarpus siliculosus])

HSP 1 Score: 405.986 bits (1042), Expect = 6.391e-141
Identity = 199/262 (75.95%), Postives = 217/262 (82.82%), Query Frame = 0
Query:    7 LACAGVAALATVAHGFVPPVPRSYTRGRMAMAA-----KKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELA 263
             AC G +    V    V      +T   + MAA     KKDFWIAPSILSAD AKLGQEVDN ++AGADIVHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVDRI+ DFA+AGASFITFHPEA+ H+DRTL LIKS GCK+GLVFNPATPL  A++VLDKVDIILLMSVNPGFGGQSFIP TL KL+EARKMIDESGYDIRLEVDGG GVANIK+IAEAGAD FVAGSAI  NPRT++ YK TID MR+ELA
Sbjct:   10 FACVGASQAFVVPTATVSGASTRHTSSSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELA 271          
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|1210525101|dbj|GAX16293.1| (ribulose-phosphate 3-epimerase [Fistulifera solaris])

HSP 1 Score: 379.407 bits (973), Expect = 1.125e-130
Identity = 188/263 (71.48%), Postives = 217/263 (82.51%), Query Frame = 0
Query:    4 LSLLACAGVAALATVAHGFVPPVPRSYTRGRMAMAAKKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266
             SL A  G A+  TV+       PR+ T   + +   KD+ IAPSILSADFA+LG+EVDNVLAAGAD+VHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVD  I DF  AGAS+ITFHPEATNH+DR+LQLI++ GCK+GLVFNPAT L  A++V+DK+DIILLMSVNPGFGGQ+FIP  L K +EARK+IDE+G D RLE+DGGV V NI+++AEAG D  VAGSAILK PRT +AYK TIDAMRAELAKV+
Sbjct:    6 FSLAALIGSASAFTVSQN----SPRTSTS--LNVWGDKDYLIAPSILSADFARLGEEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAAITDFIAAGASYITFHPEATNHVDRSLQLIRNGGCKAGLVFNPATSLDAAKYVIDKLDIILLMSVNPGFGGQAFIPAVLDKAREARKLIDEAGIDCRLEIDGGVKVDNIREVAEAGVDMMVAGSAILKEPRTMEAYKETIDAMRAELAKVK 262          
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|1210525438|dbj|GAX15781.1| (ribulose-phosphate 3-epimerase [Fistulifera solaris])

HSP 1 Score: 379.407 bits (973), Expect = 1.175e-130
Identity = 188/263 (71.48%), Postives = 217/263 (82.51%), Query Frame = 0
Query:    4 LSLLACAGVAALATVAHGFVPPVPRSYTRGRMAMAAKKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266
             SL A  G A+  TV+       PR+ T   + +   KD+ IAPSILSADFA+LG+EVDNVLAAGAD+VHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVD  I DF  AGAS+ITFHPEATNH+DR+LQLI++ GCK+GLVFNPAT L  A++V+DK+DIILLMSVNPGFGGQ+FIP  L K +EARK+IDE+G D RLE+DGGV V NI+++AEAG D  VAGSAILK PRT +AYK TIDAMRAELAKV+
Sbjct:    6 FSLAALFGSASAFTVSQN----SPRTSTS--LNVWGDKDYLIAPSILSADFARLGEEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAAITDFIAAGASYITFHPEATNHVDRSLQLIRNGGCKAGLVFNPATSLDAAKYVIDKLDIILLMSVNPGFGGQAFIPAVLDKAREARKLIDEAGIDCRLEIDGGVKVENIREVAEAGVDMMVAGSAILKEPRTMEAYKKTIDAMRAELAKVK 262          
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|551670486|ref|XP_005838001.1| (Ribulose-5-phosphate 3-epimerase protein, plastid-targeted [Guillardia theta CCMP2712] >gi|428182159|gb|EKX51021.1| Ribulose-5-phosphate 3-epimerase protein, plastid-targeted [Guillardia theta CCMP2712])

HSP 1 Score: 377.867 bits (969), Expect = 6.849e-130
Identity = 179/226 (79.20%), Postives = 197/226 (87.17%), Query Frame = 0
Query:   41 KDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266
            KD+ IAPSILSADFAKLGQEVDNVLAAGAD+VHFDVMDNHYVPNLTIGPMVCKALR+HGVTAPIDVHLMV PVDRII DF DAGAS+ITFHPEA+NHIDRTL +I+  GCK+GLV NPAT L   ++V+DK+DIILLMSVNPGFGGQ FIP  L+K KEARK+ID SGYDIRLE+DGGV V NIK +AE G D FVAGSAILK PRTQDAYK TID MR +LA  +
Sbjct:   49 KDYLIAPSILSADFAKLGQEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALRNHGVTAPIDVHLMVQPVDRIIGDFIDAGASYITFHPEASNHIDRTLAMIRDGGCKAGLVLNPATSLDYCKYVMDKIDIILLMSVNPGFGGQKFIPSVLEKAKEARKLIDASGYDIRLEIDGGVTVDNIKQVAECGVDMFVAGSAILKEPRTQDAYKTTIDKMRQQLASAK 274          
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|676396169|ref|XP_009041362.1| (hypothetical protein AURANDRAFT_69979 [Aureococcus anophagefferens] >gi|323448034|gb|EGB03938.1| hypothetical protein AURANDRAFT_69979 [Aureococcus anophagefferens])

HSP 1 Score: 375.555 bits (963), Expect = 7.114e-129
Identity = 180/242 (74.38%), Postives = 207/242 (85.54%), Query Frame = 0
Query:   25 PVPRSYTRGRMAMAAKKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266
            P  +S  R  + +   KDF IAPSILSADFA+LG+EV N L+AGAD+VHFDVMDNHYVPNLTIGPMVC ALR HGVTAPIDVHLMVSPVDRI+ DFADAGAS+ITFHPEA+ H+DRTLQLI+  GCK+GLVFNPATPL + ++V+DKVDIILLMSVNPGFGGQSFIP TL K +EARK+ID SGYDIRLE+DGGV  ANIK++AEAG D FVAGSAI ++PRT++ YK TIDAMR ELA  +
Sbjct:   28 PAAKSSMRMEL-IEPDKDFLIAPSILSADFARLGEEVVNSLSAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVGDFADAGASYITFHPEASPHVDRTLQLIRGAGCKAGLVFNPATPLDILKYVMDKVDIILLMSVNPGFGGQSFIPATLDKAREARKLIDASGYDIRLEIDGGVSGANIKEVAEAGVDMFVAGSAIFRDPRTEEDYKVTIDAMRDELAAAK 268          
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|676397475|ref|XP_009042015.1| (Ribulose-phosphate 3-epimerase [Aureococcus anophagefferens] >gi|323447374|gb|EGB03298.1| Ribulose-phosphate 3-epimerase [Aureococcus anophagefferens])

HSP 1 Score: 374.015 bits (959), Expect = 7.461e-129
Identity = 177/226 (78.32%), Postives = 201/226 (88.94%), Query Frame = 0
Query:   41 KDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266
            KDF IAPSILSADFA+LG+EV N L+AGAD+VHFDVMDNHYVPNLTIGPMVC ALR HGVTAPIDVHLMVSPVDRI+ DFADAGAS+ITFHPEA+ H+DRTLQLI+  GCK+GLVFNPATPL + ++V+DKVDIILLMSVNPGFGGQSFIP TL K +EARK+ID SGYDIRLE+DGGV  ANIK++AEAG D FVAGSAI ++PRT++ YK TIDAMR ELA  +
Sbjct:    8 KDFLIAPSILSADFARLGEEVVNSLSAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVGDFADAGASYITFHPEASPHVDRTLQLIRGAGCKAGLVFNPATPLDILKYVMDKVDIILLMSVNPGFGGQSFIPATLDKAREARKLIDASGYDIRLEIDGGVSGANIKEVAEAGVDMFVAGSAIFRDPRTEEDYKVTIDAMRDELAAAK 233          
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|1147537530|ref|WP_077242920.1| (ribulose-phosphate 3-epimerase [Oceanospirillum linum] >gi|1090719690|emb|SEF57846.1| ribulose-5-phosphate 3-epimerase [Oleiphilus messinensis] >gi|1151999683|gb|OOV88483.1| ribulose-phosphate 3-epimerase [Oceanospirillum linum])

HSP 1 Score: 372.089 bits (954), Expect = 2.159e-128
Identity = 180/226 (79.65%), Postives = 202/226 (89.38%), Query Frame = 0
Query:   41 KDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266
             DF IAPSILSADFA+LG+EVDNVLA+GAD+VHFDVMDNHYVPNLTIGPMVCKALR+HGVTAPIDVHLMVSPVDR+I DF DAGAS+ITFHPEA++HIDR+L +I+  GCKSGLVFNPATPL    +VLDKVD+ILLMSVNPGFGGQ FIP TL KL++ARK+IDESGYDIRLE+DGGVG+ NI++IAEAGAD FVAGSAI       D YKATIDAMRAELAKV+
Sbjct:    2 SDFKIAPSILSADFARLGEEVDNVLASGADVVHFDVMDNHYVPNLTIGPMVCKALRNHGVTAPIDVHLMVSPVDRMISDFIDAGASWITFHPEASDHIDRSLSMIRDGGCKSGLVFNPATPLHYLDYVLDKVDMILLMSVNPGFGGQKFIPGTLDKLRQARKIIDESGYDIRLEIDGGVGIQNIREIAEAGADTFVAGSAIFNT----DDYKATIDAMRAELAKVE 223          
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|223998756|ref|XP_002289051.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976159|gb|EED94487.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 373.244 bits (957), Expect = 3.852e-128
Identity = 182/239 (76.15%), Postives = 204/239 (85.36%), Query Frame = 0
Query:   27 PRSYTRGRMAMAAKKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKV 265
            PR+ T   + +   KD+ IAPSILSA+FAKLG+EVDN+L AGAD+VHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVD  I DF DAGAS+ITFHPEATNHIDR+LQLI++ GCK+GLVFNPAT L  A HV DK+DIILLMSVNPGFGGQ+FIP TL K + ARK IDE+G D RLE+DGGV V NIK++AEAG D  VAGSAILK PRT++AYK TIDAMR ELAKV
Sbjct:   25 PRATTS--LNVWGDKDYLIAPSILSANFAKLGEEVDNMLEAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAAIGDFIDAGASYITFHPEATNHIDRSLQLIRNGGCKAGLVFNPATSLDYAHHVKDKLDIILLMSVNPGFGGQAFIPATLDKARAARKFIDENGLDCRLEIDGGVKVDNIKEVAEAGVDMMVAGSAILKEPRTKEAYKVTIDAMREELAKV 261          
BLAST of EWM24910.1 vs. NCBI_GenBank
Match: gi|1197232239|ref|WP_086480720.1| (ribulose-phosphate 3-epimerase [Oceanospirillum sp. AK56])

HSP 1 Score: 369.777 bits (948), Expect = 2.085e-127
Identity = 178/225 (79.11%), Postives = 202/225 (89.78%), Query Frame = 0
Query:   42 DFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKVQ 266
            DF IAPSILSADFA+LG+EVDNVLA+GAD+VHFDVMDNHYVPNLTIGPMVCKALR+HGVTAPIDVHLMVSPVDR+I DF DAGAS+ITFHPEA++HIDR+L +I+  GCKSGLVFNPATPL    +VLDKVD++LLMSVNPGFGGQ FIP TL KL++ARK+IDESGYDIRLE+DGGVG+ NI++IAEAGAD FVAGSAI       D YKATIDAMRAELA+V+
Sbjct:    3 DFKIAPSILSADFARLGEEVDNVLASGADVVHFDVMDNHYVPNLTIGPMVCKALRNHGVTAPIDVHLMVSPVDRMIGDFIDAGASWITFHPEASDHIDRSLSMIRDGGCKSGLVFNPATPLHYLDYVLDKVDVVLLMSVNPGFGGQKFIPGTLDKLRQARKIIDESGYDIRLEIDGGVGIQNIREIAEAGADTFVAGSAIFNT----DDYKATIDAMRAELAQVK 223          
The following BLAST results are available for this feature:
BLAST of EWM24910.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106538|gb|EWM24910.1|0.000e+0100.00ribulose-phosphate 3-epimerase [Nannochloropsis ga... [more]
gi|299469833|emb|CBN76687.1|6.391e-14175.95ribulose-phosphate 3-epimerase [Ectocarpus silicul... [more]
gi|1210525101|dbj|GAX16293.1|1.125e-13071.48ribulose-phosphate 3-epimerase [Fistulifera solari... [more]
gi|1210525438|dbj|GAX15781.1|1.175e-13071.48ribulose-phosphate 3-epimerase [Fistulifera solari... [more]
gi|551670486|ref|XP_005838001.1|6.849e-13079.20Ribulose-5-phosphate 3-epimerase protein, plastid-... [more]
gi|676396169|ref|XP_009041362.1|7.114e-12974.38hypothetical protein AURANDRAFT_69979 [Aureococcus... [more]
gi|676397475|ref|XP_009042015.1|7.461e-12978.32Ribulose-phosphate 3-epimerase [Aureococcus anopha... [more]
gi|1147537530|ref|WP_077242920.1|2.159e-12879.65ribulose-phosphate 3-epimerase [Oceanospirillum li... [more]
gi|223998756|ref|XP_002289051.1|3.852e-12876.15predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1197232239|ref|WP_086480720.1|2.085e-12779.11ribulose-phosphate 3-epimerase [Oceanospirillum sp... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5778rna5778Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications