EWM24915.1, cds5749 (CDS) Nannochloropsis gaditana

Overview
NameEWM24915.1
Unique Namecds5749
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:780231..780275 -
Alignment locationCM002466.1:780070..780098 -
Alignment locationCM002466.1:779818..779910 -
Alignment locationCM002466.1:779625..779681 -
Alignment locationCM002466.1:778596..779457 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24915.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100092g3.2138.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:780231..780275 -
CM002466.1supercontigCM002466.1:780070..780098 -
CM002466.1supercontigCM002466.1:779818..779910 -
CM002466.1supercontigCM002466.1:779625..779681 -
CM002466.1supercontigCM002466.1:778596..779457 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
[Close]
BLAST of EWM24915.1 vs. NCBI_GenBank
Match: gi|585106543|gb|EWM24915.1| (hypothetical protein Naga_100092g3 [Nannochloropsis gaditana])

HSP 1 Score: 719.539 bits (1856), Expect = 0.000e+0
Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 0 
Query:    1 MSDVKSLFRKKTKQAAKAKTEPVKPTAEEEEDDEWGVAPKPTEQLYLGNRKARELIGGAYADVNLAVKVAHDDTKAVFHDVRKKAVSAAASEASPAAPVEPSPPPAPEPAPTAQPGCVYRGVQDVAFSKNLPLIDYHILLGIYCSLSSPLFSSPSPFLPVSLLPPDRSDRRWRSRRVLAEQGLIPPPLDSGSNSSSKENATATEAFPALSGFPSLGPARAAGPSPVVAAGRWGQVADTSSSRTTGQKIEKEGGVTPAPAGTASEGAKIESEGPLAAPPSASNAVLSTPSSQGKEKESTFVAPTVTGATESLNVQDSSVGVRQEKVEGNVAVDVIAEGVATVDLKSKFGTKKKKKKHIDIDA 361
            MSDVKSLFRKKTKQAAKAKTEPVKPTAEEEEDDEWGVAPKPTEQLYLGNRKARELIGGAYADVNLAVKVAHDDTKAVFHDVRKKAVSAAASEASPAAPVEPSPPPAPEPAPTAQPGCVYRGVQDVAFSKNLPLIDYHILLGIYCSLSSPLFSSPSPFLPVSLLPPDRSDRRWRSRRVLAEQGLIPPPLDSGSNSSSKENATATEAFPALSGFPSLGPARAAGPSPVVAAGRWGQVADTSSSRTTGQKIEKEGGVTPAPAGTASEGAKIESEGPLAAPPSASNAVLSTPSSQGKEKESTFVAPTVTGATESLNVQDSSVGVRQEKVEGNVAVDVIAEGVATVDLKSKFGTKKKKKKHIDIDA
Sbjct:    1 MSDVKSLFRKKTKQAAKAKTEPVKPTAEEEEDDEWGVAPKPTEQLYLGNRKARELIGGAYADVNLAVKVAHDDTKAVFHDVRKKAVSAAASEASPAAPVEPSPPPAPEPAPTAQPGCVYRGVQDVAFSKNLPLIDYHILLGIYCSLSSPLFSSPSPFLPVSLLPPDRSDRRWRSRRVLAEQGLIPPPLDSGSNSSSKENATATEAFPALSGFPSLGPARAAGPSPVVAAGRWGQVADTSSSRTTGQKIEKEGGVTPAPAGTASEGAKIESEGPLAAPPSASNAVLSTPSSQGKEKESTFVAPTVTGATESLNVQDSSVGVRQEKVEGNVAVDVIAEGVATVDLKSKFGTKKKKKKHIDIDA 361
[Close]
BLAST of EWM24915.1 vs. NCBI_GenBank
Match: gi|553190750|ref|XP_005855251.1| (hypothetical protein NGA_0082000 [Nannochloropsis gaditana CCMP526] >gi|422293808|gb|EKU21108.1| hypothetical protein NGA_0082000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 175.637 bits (444), Expect = 5.038e-51
Identity = 95/118 (80.51%), Postives = 96/118 (81.36%), Query Frame = 0 
Query:    1 MSDVKSLFRKKTKQAAKAKTEPVKPTAEEEEDDEWGVAPKPTEQLYLGNRKARELIGGAYADVNLAVKVAHDDTKAVFHDVRKKAVSAAASEASPAAPVEPSPPPAPEPAPTAQPGCV 118
            MSDVKSLFRKKTKQAAKAKTEPVKPTAEEEEDDEWGV PKPTEQLYLGNRKAREL+                   AVFHDVRKKAVSAAASEASPAAPVEPSPPPAPEPAPTAQPG  
Sbjct:    1 MSDVKSLFRKKTKQAAKAKTEPVKPTAEEEEDDEWGVVPKPTEQLYLGNRKARELM-------------------AVFHDVRKKAVSAAASEASPAAPVEPSPPPAPEPAPTAQPGSC 99
[Close]
BLAST of EWM24915.1 vs. NCBI_GenBank
Match: gi|553185754|ref|XP_005854300.1| (omega-6 fatty acid desaturase delta-12 [Nannochloropsis gaditana CCMP526] >gi|422294761|gb|EKU22061.1| omega-6 fatty acid desaturase delta-12 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 108.612 bits (270), Expect = 2.924e-23
Identity = 50/60 (83.33%), Postives = 53/60 (88.33%), Query Frame = 0 
Query:   16 AKAKTEPVKPTAEEEEDDEWGVAPKPTEQLYLGNRKARELIGGAYADVNLAVKVAHDDTK 75
            A  ++  +  TAEEEEDDEWGV PKPTEQLYLGNRKARELIGGAYADVNLAVKVAHDDTK
Sbjct:  278 ALWRSYTLCKTAEEEEDDEWGVVPKPTEQLYLGNRKARELIGGAYADVNLAVKVAHDDTK 337
The following BLAST results are available for this feature:
BLAST of EWM24915.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585106543|gb|EWM24915.1|0.000e+0100.00hypothetical protein Naga_100092g3 [Nannochloropsi... [more]
gi|553190750|ref|XP_005855251.1|5.038e-5180.51hypothetical protein NGA_0082000 [Nannochloropsis ... [more]
gi|553185754|ref|XP_005854300.1|2.924e-2383.33omega-6 fatty acid desaturase delta-12 [Nannochlor... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5764rna5764Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications