EWM24928.1, cds5745 (CDS) Nannochloropsis gaditana

Overview
NameEWM24928.1
Unique Namecds5745
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:773453..773458 -
Alignment locationCM002466.1:773136..773280 -
Alignment locationCM002466.1:772434..772932 -
Alignment locationCM002466.1:771999..772190 -

Link to JBrowse

Properties
Property NameValue
Start range771999
Start range.
Protein idEWM24928.1
Productring zinc finger-containing protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101557g1.208.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:773453..773458 -
CM002466.1supercontigCM002466.1:773136..773280 -
CM002466.1supercontigCM002466.1:772434..772932 -
CM002466.1supercontigCM002466.1:771999..772190 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: INTERPRO
TermDefinition
IPR000547Clathrin_H-chain/VPS_repeat
IPR016528VPS11
Homology
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|585106557|gb|EWM24928.1| (ring zinc finger-containing protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 569.311 bits (1466), Expect = 0.000e+0
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0
Query:    1 MKLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPSPSYRDALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRFP 281
            MKLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPSPSYRDALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRFP
Sbjct:    1 MKLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPSPSYRDALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRFP 281          
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|553185751|ref|XP_005854299.1| (vacuolar protein sorting-associated 11-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294760|gb|EKU22060.1| vacuolar protein sorting-associated 11-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 233.802 bits (595), Expect = 1.627e-74
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
Query:    1 MKLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVF 110
            MKLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVF
Sbjct:   50 MKLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVF 159          
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|1173944190|gb|OQR92954.1| (vacuolar protein sorting-associated protein [Thraustotheca clavata])

HSP 1 Score: 186.422 bits (472), Expect = 7.384e-50
Identity = 113/287 (39.37%), Postives = 150/287 (52.26%), Query Frame = 0
Query:    2 KLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPSPSYR--------DALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRF 280
             L+P+AI LA+S NY L+ IM+I+R Y D+LY K   +D S++QY  TIG+++PSYVI RFLD QRIHNLT YLE LH +G ATA  TT LLNCYTKLKD  +LD  +  +         ++G   +EG           P  L+                                             DV+ A+++L+E  Y +HAL +A+K+  H WYL++QL++ S S          DAL YI  LSF +A   L  YG+ L+  LP  TT  L  LCTGRF
Sbjct:  413 NLYPIAISLAFSSNYDLSSIMDIFRMYGDYLYNKGD-FDGSLRQYARTIGHVEPSYVIRRFLDAQRIHNLTTYLETLHNKGFATAEHTTLLLNCYTKLKDVKKLDAFLLID---------DDGTSSKEGT----------PQALTF--------------------------------------------DVETALTVLRE-NYPQHALALAKKHNEHSWYLKIQLDRISDSLSDVEQARVADALEYIRGLSFAEADMNLRKYGRTLVTHLPGPTTELLKQLCTGRF 634          
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|669165720|ref|XP_008618422.1| (hypothetical protein SDRG_14094 [Saprolegnia diclina VS20] >gi|530729894|gb|EQC28136.1| hypothetical protein SDRG_14094 [Saprolegnia diclina VS20])

HSP 1 Score: 184.882 bits (468), Expect = 2.701e-49
Identity = 113/287 (39.37%), Postives = 148/287 (51.57%), Query Frame = 0
Query:    2 KLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPSPSYR--------DALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRF 280
             L+P+AI LA+S NY L+ IM+I+R Y D LY K   YD S++QY  TIG+++PSYVI RFLD QRIHNLT YLE LH +  ATA  TT LLNCYTKLKD  +LD  +  +         ++G   +EG           P  L+                                             DV+ A+++L+E  Y +HAL +ARK+  H WYL++QL++ S +          DAL YI  LSF +A   L  YG+ L+  LP  TT  L  LCTGRF
Sbjct:  415 NLYPIAISLAFSSNYDLSSIMDIFRMYGDFLYNKGD-YDGSLRQYARTIGHVEPSYVIRRFLDAQRIHNLTTYLETLHTKAFATAEHTTLLLNCYTKLKDVKKLDAFLLID---------DDGSNAKEGT----------PQALTF--------------------------------------------DVETALTVLRE-NYPQHALALARKHAEHSWYLKIQLDRISDTLSDAEHARVADALDYIRGLSFAEADMNLRKYGRTLVTHLPGPTTELLQQLCTGRF 636          
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|813127144|ref|XP_012197252.1| (hypothetical protein SPRG_03282 [Saprolegnia parasitica CBS 223.65] >gi|641538230|gb|KDO32064.1| hypothetical protein SPRG_03282 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 182.956 bits (463), Expect = 1.397e-48
Identity = 112/287 (39.02%), Postives = 148/287 (51.57%), Query Frame = 0
Query:    2 KLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPSPSYR--------DALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRF 280
             L+P+AI LA+S NY L+ IM+I+R Y D LY K   YD S++QY  TIG+++PSYVI RFLD QRIHNLT YLE LH +  ATA  TT LLNCYTKLKD  +LD  +  +         ++G   +EG           P  L+                                             DV+ A+++L+E  Y +HAL +A+K+  H WYL++QL++ S +          DAL YI  LSF +A   L  YG+ L+  LP  TT  L  LCTGRF
Sbjct:  416 NLYPIAISLAFSSNYDLSSIMDIFRMYGDFLYNKGD-YDGSLRQYARTIGHVEPSYVIRRFLDAQRIHNLTTYLETLHTKAFATAEHTTLLLNCYTKLKDVKKLDAFLLID---------DDGSSAKEGT----------PQALTF--------------------------------------------DVETALTVLRE-NYPQHALALAKKHGEHSWYLKIQLDRISDTLSDAEHARVADALDYIRGLSFAEADMNLRKYGRTLVTHLPGPTTELLQQLCTGRF 637          
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|325183530|emb|CCA17991.1| (vacuolar protein sortingassociated protein putative [Albugo laibachii Nc14])

HSP 1 Score: 177.563 bits (449), Expect = 8.924e-47
Identity = 113/293 (38.57%), Postives = 147/293 (50.17%), Query Frame = 0
Query:    3 LFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPS---------------PSYRDALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRF 280
            L+ +AI LA+S NY +  I++I+R Y DHLY+K   YD S++QY  TIG+L+PSYVI RFLD QRIHNLT YLEALH +  A A  TT LLNC+TKLKD  +LD  +          + E+G   + GG+                                           SLN             DV+ A+S+L E  Y +HAL +ARK+  H WYL++QL++ S                   DAL YI  LSF +A   L  YG+ L+  LP  TT  L  LCTG+F
Sbjct:  382 LYSIAISLAFSSNYDINSIVDIFRMYGDHLYQKGD-YDGSLRQYTRTIGHLEPSYVIRRFLDAQRIHNLTNYLEALHEKAFANAEHTTLLLNCFTKLKDVKKLDAFI----------QLEDGNAAKAGGQ------------------------------------------TSLN------------FDVETAISVLWEM-YPQHALTLARKHEEHSWYLKIQLDQISYVDSDGSTTLSSAEKERVIDALEYIKHLSFAEADANLRKYGRTLVTHLPGPTTELLKRLCTGKF 608          
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|698810748|ref|XP_009838403.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574106443|gb|ETV71960.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 170.244 bits (430), Expect = 1.446e-44
Identity = 107/287 (37.28%), Postives = 139/287 (48.43%), Query Frame = 0
Query:    3 LFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQL---------EKPSPSYRDALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRF 280
            L+ +AI LA+S NY L  IM+I+R Y DHLY+K   +D S++QY  TIGY++PSYVI +FLD QRIHNLT YLEALH +  AT+  TT LLNCYTKLKD  +LD  +  +                                                      KE+++P    + TA+  +R                   Y  HAL +A+K+  H WYL++QL         E       DAL YI  LSF +A   L  YG+ L+  +P  TT  L ALCTGRF
Sbjct:  151 LYSIAISLAFSSNYDLTSIMDIFRAYGDHLYQKGD-FDGSLRQYARTIGYVEPSYVIRQFLDAQRIHNLTTYLEALHAKAFATSEHTTLLLNCYTKLKDVKKLDSFLLID---------------------------------------------------DDPKEKKQPLTFDVETALTVLRD-----------------NYPTHALTLAKKHHEHSWYLKIQLDRIHSETLSESDQARVLDALTYIEGLSFGEANLNLRKYGRTLVTHVPGPTTELLKALCTGRF 368          
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|168028770|ref|XP_001766900.1| (predicted protein [Physcomitrella patens] >gi|162681879|gb|EDQ68302.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 164.466 bits (415), Expect = 3.511e-42
Identity = 106/276 (38.41%), Postives = 138/276 (50.00%), Query Frame = 0
Query:    3 LFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPSPSYRDALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTG 278
            L+ +AI L  +     A   E+ R+Y DHLY K+  YDE++ QYI TIG L+PSYVI +FLD QRIHNLT YLE LH +G ATA  TT LLNCYTKLKD ++L+  +          +GEEG+EGE                    P  +VET                                        AV + + AGY++HAL +A +   HEWYL++ LE     Y +AL YI  LS  ++   L  YG+ L+   P ET+  LL LCT 
Sbjct:  352 LYTIAINLVQNNQADAAATAEVMRKYGDHLYGKQN-YDEAMAQYIRTIGQLEPSYVIQKFLDAQRIHNLTHYLEKLHEKGLATADHTTLLLNCYTKLKDVSKLNDFI----------KGEEGKEGE--------------------PRFDVET----------------------------------------AVRVCRAAGYYQHALFVAMRAGEHEWYLKILLEDLK-RYEEALQYIIGLSLYESTVALKQYGKVLVEHKPAETSAALLKLCTN 555          
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|301100702|ref|XP_002899440.1| (vacuolar protein sorting-associated protein, putative [Phytophthora infestans T30-4] >gi|262103748|gb|EEY61800.1| vacuolar protein sorting-associated protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 164.081 bits (414), Expect = 5.125e-42
Identity = 110/294 (37.41%), Postives = 150/294 (51.02%), Query Frame = 0
Query:    2 KLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPS---------------PSYRDALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRF 280
             L+ +AI LA+S NY +  I++I+R Y DHLY+K   YD S++QY+ TIG+++PSYVI RFLD QRIHNLT YLEALH +  A A  TT LLNCYTKLKD  +LD+ +  +  +  +    + + GE                  L P                            N A+  +       DV+ A+S+L E  Y +HAL +A+K+  H WYL++QL+  S                   DAL YI  LSF +A   L  YG+ L+  +P  TT  L  LCTG+F
Sbjct:  413 NLYSIAISLAFSSNYDVNSIIDIFRMYGDHLYQKGD-YDGSLRQYVRTIGHVEPSYVIRRFLDAQRIHNLTAYLEALHEKAFANAEHTTLLLNCYTKLKDVKKLDKFIQLDEVIDAKKTKTDSDSGE------------------LTPR---------------------------NGAVANL-----NFDVETAISVLWE-NYPQHALTLAKKHEEHSWYLKIQLDHISYVDSEDSAALSESEKERVADALEYIEHLSFSEADSNLRKYGRTLVTHMPAPTTELLKRLCTGKF 654          
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|567966093|gb|ETK91550.1| (hypothetical protein L915_04909 [Phytophthora parasitica] >gi|567994811|gb|ETL44960.1| hypothetical protein L916_04855 [Phytophthora parasitica])

HSP 1 Score: 163.696 bits (413), Expect = 6.036e-42
Identity = 108/294 (36.73%), Postives = 149/294 (50.68%), Query Frame = 0
Query:    2 KLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPS---------------PSYRDALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRF 280
             L+ +AI LA+S NY +  I++I+R Y DHLY+K   YD S++QY+ TIG+++PSYVI RFLD QRIHNLT YLEALH +  A A  TT LLNCYTKLKD  +LD+ +  +  +  +    + + G+     G  +                                      +LN             DV+ A+S+L E  Y +HAL +A+K+  H WYL++QL+  S                   DAL YI  LSF +A   L  YG+ L+  +P  TT  L  LCTG+F
Sbjct:  413 NLYSIAISLAFSSNYDVNSIIDIFRMYGDHLYQKGD-YDGSLRQYVRTIGHVEPSYVIRRFLDAQRIHNLTAYLEALHEKAFANAEHTTLLLNCYTKLKDVKKLDKFIQLDEVIDAKKTKSDSDSGDLTPRNGAAA--------------------------------------NLN------------FDVETAISVLWE-NYPQHALTLAKKHEEHSWYLKIQLDHISYVDSEDSAALSESEKERVADALEYIEHLSFSEADSNLRKYGRTLVTHMPAPTTELLKLLCTGKF 654          
The following BLAST results are available for this feature:
BLAST of EWM24928.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106557|gb|EWM24928.1|0.000e+0100.00ring zinc finger-containing protein, partial [Nann... [more]
gi|553185751|ref|XP_005854299.1|1.627e-74100.00vacuolar protein sorting-associated 11-like protei... [more]
gi|1173944190|gb|OQR92954.1|7.384e-5039.37vacuolar protein sorting-associated protein [Thrau... [more]
gi|669165720|ref|XP_008618422.1|2.701e-4939.37hypothetical protein SDRG_14094 [Saprolegnia dicli... [more]
gi|813127144|ref|XP_012197252.1|1.397e-4839.02hypothetical protein SPRG_03282 [Saprolegnia paras... [more]
gi|325183530|emb|CCA17991.1|8.924e-4738.57vacuolar protein sortingassociated protein putativ... [more]
gi|698810748|ref|XP_009838403.1|1.446e-4437.28hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|168028770|ref|XP_001766900.1|3.511e-4238.41predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|301100702|ref|XP_002899440.1|5.125e-4237.41vacuolar protein sorting-associated protein, putat... [more]
gi|567966093|gb|ETK91550.1|6.036e-4236.73hypothetical protein L915_04909 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5760rna5760Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications