EWM24928.1, cds5745 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|585106557|gb|EWM24928.1| (ring zinc finger-containing protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 569.311 bits (1466), Expect = 0.000e+0 Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0
Query: 1 MKLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPSPSYRDALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRFP 281
MKLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPSPSYRDALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRFP
Sbjct: 1 MKLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPSPSYRDALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRFP 281
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|553185751|ref|XP_005854299.1| (vacuolar protein sorting-associated 11-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294760|gb|EKU22060.1| vacuolar protein sorting-associated 11-like protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 233.802 bits (595), Expect = 1.627e-74 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
Query: 1 MKLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVF 110
MKLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVF
Sbjct: 50 MKLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVF 159
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|1173944190|gb|OQR92954.1| (vacuolar protein sorting-associated protein [Thraustotheca clavata]) HSP 1 Score: 186.422 bits (472), Expect = 7.384e-50 Identity = 113/287 (39.37%), Postives = 150/287 (52.26%), Query Frame = 0
Query: 2 KLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPSPSYR--------DALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRF 280
L+P+AI LA+S NY L+ IM+I+R Y D+LY K +D S++QY TIG+++PSYVI RFLD QRIHNLT YLE LH +G ATA TT LLNCYTKLKD +LD + + ++G +EG P L+ DV+ A+++L+E Y +HAL +A+K+ H WYL++QL++ S S DAL YI LSF +A L YG+ L+ LP TT L LCTGRF
Sbjct: 413 NLYPIAISLAFSSNYDLSSIMDIFRMYGDYLYNKGD-FDGSLRQYARTIGHVEPSYVIRRFLDAQRIHNLTTYLETLHNKGFATAEHTTLLLNCYTKLKDVKKLDAFLLID---------DDGTSSKEGT----------PQALTF--------------------------------------------DVETALTVLRE-NYPQHALALAKKHNEHSWYLKIQLDRISDSLSDVEQARVADALEYIRGLSFAEADMNLRKYGRTLVTHLPGPTTELLKQLCTGRF 634
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|669165720|ref|XP_008618422.1| (hypothetical protein SDRG_14094 [Saprolegnia diclina VS20] >gi|530729894|gb|EQC28136.1| hypothetical protein SDRG_14094 [Saprolegnia diclina VS20]) HSP 1 Score: 184.882 bits (468), Expect = 2.701e-49 Identity = 113/287 (39.37%), Postives = 148/287 (51.57%), Query Frame = 0
Query: 2 KLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPSPSYR--------DALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRF 280
L+P+AI LA+S NY L+ IM+I+R Y D LY K YD S++QY TIG+++PSYVI RFLD QRIHNLT YLE LH + ATA TT LLNCYTKLKD +LD + + ++G +EG P L+ DV+ A+++L+E Y +HAL +ARK+ H WYL++QL++ S + DAL YI LSF +A L YG+ L+ LP TT L LCTGRF
Sbjct: 415 NLYPIAISLAFSSNYDLSSIMDIFRMYGDFLYNKGD-YDGSLRQYARTIGHVEPSYVIRRFLDAQRIHNLTTYLETLHTKAFATAEHTTLLLNCYTKLKDVKKLDAFLLID---------DDGSNAKEGT----------PQALTF--------------------------------------------DVETALTVLRE-NYPQHALALARKHAEHSWYLKIQLDRISDTLSDAEHARVADALDYIRGLSFAEADMNLRKYGRTLVTHLPGPTTELLQQLCTGRF 636
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|813127144|ref|XP_012197252.1| (hypothetical protein SPRG_03282 [Saprolegnia parasitica CBS 223.65] >gi|641538230|gb|KDO32064.1| hypothetical protein SPRG_03282 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 182.956 bits (463), Expect = 1.397e-48 Identity = 112/287 (39.02%), Postives = 148/287 (51.57%), Query Frame = 0
Query: 2 KLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPSPSYR--------DALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRF 280
L+P+AI LA+S NY L+ IM+I+R Y D LY K YD S++QY TIG+++PSYVI RFLD QRIHNLT YLE LH + ATA TT LLNCYTKLKD +LD + + ++G +EG P L+ DV+ A+++L+E Y +HAL +A+K+ H WYL++QL++ S + DAL YI LSF +A L YG+ L+ LP TT L LCTGRF
Sbjct: 416 NLYPIAISLAFSSNYDLSSIMDIFRMYGDFLYNKGD-YDGSLRQYARTIGHVEPSYVIRRFLDAQRIHNLTTYLETLHTKAFATAEHTTLLLNCYTKLKDVKKLDAFLLID---------DDGSSAKEGT----------PQALTF--------------------------------------------DVETALTVLRE-NYPQHALALAKKHGEHSWYLKIQLDRISDTLSDAEHARVADALDYIRGLSFAEADMNLRKYGRTLVTHLPGPTTELLQQLCTGRF 637
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|325183530|emb|CCA17991.1| (vacuolar protein sortingassociated protein putative [Albugo laibachii Nc14]) HSP 1 Score: 177.563 bits (449), Expect = 8.924e-47 Identity = 113/293 (38.57%), Postives = 147/293 (50.17%), Query Frame = 0
Query: 3 LFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPS---------------PSYRDALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRF 280
L+ +AI LA+S NY + I++I+R Y DHLY+K YD S++QY TIG+L+PSYVI RFLD QRIHNLT YLEALH + A A TT LLNC+TKLKD +LD + + E+G + GG+ SLN DV+ A+S+L E Y +HAL +ARK+ H WYL++QL++ S DAL YI LSF +A L YG+ L+ LP TT L LCTG+F
Sbjct: 382 LYSIAISLAFSSNYDINSIVDIFRMYGDHLYQKGD-YDGSLRQYTRTIGHLEPSYVIRRFLDAQRIHNLTNYLEALHEKAFANAEHTTLLLNCFTKLKDVKKLDAFI----------QLEDGNAAKAGGQ------------------------------------------TSLN------------FDVETAISVLWEM-YPQHALTLARKHEEHSWYLKIQLDQISYVDSDGSTTLSSAEKERVIDALEYIKHLSFAEADANLRKYGRTLVTHLPGPTTELLKRLCTGKF 608
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|698810748|ref|XP_009838403.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574106443|gb|ETV71960.1| hypothetical protein, variant [Aphanomyces astaci]) HSP 1 Score: 170.244 bits (430), Expect = 1.446e-44 Identity = 107/287 (37.28%), Postives = 139/287 (48.43%), Query Frame = 0
Query: 3 LFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQL---------EKPSPSYRDALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRF 280
L+ +AI LA+S NY L IM+I+R Y DHLY+K +D S++QY TIGY++PSYVI +FLD QRIHNLT YLEALH + AT+ TT LLNCYTKLKD +LD + + KE+++P + TA+ +R Y HAL +A+K+ H WYL++QL E DAL YI LSF +A L YG+ L+ +P TT L ALCTGRF
Sbjct: 151 LYSIAISLAFSSNYDLTSIMDIFRAYGDHLYQKGD-FDGSLRQYARTIGYVEPSYVIRQFLDAQRIHNLTTYLEALHAKAFATSEHTTLLLNCYTKLKDVKKLDSFLLID---------------------------------------------------DDPKEKKQPLTFDVETALTVLRD-----------------NYPTHALTLAKKHHEHSWYLKIQLDRIHSETLSESDQARVLDALTYIEGLSFGEANLNLRKYGRTLVTHVPGPTTELLKALCTGRF 368
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|168028770|ref|XP_001766900.1| (predicted protein [Physcomitrella patens] >gi|162681879|gb|EDQ68302.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 164.466 bits (415), Expect = 3.511e-42 Identity = 106/276 (38.41%), Postives = 138/276 (50.00%), Query Frame = 0
Query: 3 LFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPSPSYRDALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTG 278
L+ +AI L + A E+ R+Y DHLY K+ YDE++ QYI TIG L+PSYVI +FLD QRIHNLT YLE LH +G ATA TT LLNCYTKLKD ++L+ + +GEEG+EGE P +VET AV + + AGY++HAL +A + HEWYL++ LE Y +AL YI LS ++ L YG+ L+ P ET+ LL LCT
Sbjct: 352 LYTIAINLVQNNQADAAATAEVMRKYGDHLYGKQN-YDEAMAQYIRTIGQLEPSYVIQKFLDAQRIHNLTHYLEKLHEKGLATADHTTLLLNCYTKLKDVSKLNDFI----------KGEEGKEGE--------------------PRFDVET----------------------------------------AVRVCRAAGYYQHALFVAMRAGEHEWYLKILLEDLK-RYEEALQYIIGLSLYESTVALKQYGKVLVEHKPAETSAALLKLCTN 555
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|301100702|ref|XP_002899440.1| (vacuolar protein sorting-associated protein, putative [Phytophthora infestans T30-4] >gi|262103748|gb|EEY61800.1| vacuolar protein sorting-associated protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 164.081 bits (414), Expect = 5.125e-42 Identity = 110/294 (37.41%), Postives = 150/294 (51.02%), Query Frame = 0
Query: 2 KLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPS---------------PSYRDALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRF 280
L+ +AI LA+S NY + I++I+R Y DHLY+K YD S++QY+ TIG+++PSYVI RFLD QRIHNLT YLEALH + A A TT LLNCYTKLKD +LD+ + + + + + + GE L P N A+ + DV+ A+S+L E Y +HAL +A+K+ H WYL++QL+ S DAL YI LSF +A L YG+ L+ +P TT L LCTG+F
Sbjct: 413 NLYSIAISLAFSSNYDVNSIIDIFRMYGDHLYQKGD-YDGSLRQYVRTIGHVEPSYVIRRFLDAQRIHNLTAYLEALHEKAFANAEHTTLLLNCYTKLKDVKKLDKFIQLDEVIDAKKTKTDSDSGE------------------LTPR---------------------------NGAVANL-----NFDVETAISVLWE-NYPQHALTLAKKHEEHSWYLKIQLDHISYVDSEDSAALSESEKERVADALEYIEHLSFSEADSNLRKYGRTLVTHMPAPTTELLKRLCTGKF 654
BLAST of EWM24928.1 vs. NCBI_GenBank
Match: gi|567966093|gb|ETK91550.1| (hypothetical protein L915_04909 [Phytophthora parasitica] >gi|567994811|gb|ETL44960.1| hypothetical protein L916_04855 [Phytophthora parasitica]) HSP 1 Score: 163.696 bits (413), Expect = 6.036e-42 Identity = 108/294 (36.73%), Postives = 149/294 (50.68%), Query Frame = 0
Query: 2 KLFPVAIKLAYSCNYPLAQIMEIYRRYADHLYEKKRAYDESVQQYIHTIGYLDPSYVIARFLDPQRIHNLTVYLEALHRQGHATAALTTFLLNCYTKLKDTARLDRLVFPERYVGGEGEGEEGEEGEEGGERGEGSRPYLPAGLSLLPAEEVETVGGMEGEQGGGKERQEPEGESLNTAMGRVRRRRGGVDVQAAVSILKEAGYFEHALEIARKYRAHEWYLRVQLEKPS---------------PSYRDALAYITSLSFPDAARFLSLYGQRLLAVLPEETTGTLLALCTGRF 280
L+ +AI LA+S NY + I++I+R Y DHLY+K YD S++QY+ TIG+++PSYVI RFLD QRIHNLT YLEALH + A A TT LLNCYTKLKD +LD+ + + + + + + G+ G + +LN DV+ A+S+L E Y +HAL +A+K+ H WYL++QL+ S DAL YI LSF +A L YG+ L+ +P TT L LCTG+F
Sbjct: 413 NLYSIAISLAFSSNYDVNSIIDIFRMYGDHLYQKGD-YDGSLRQYVRTIGHVEPSYVIRRFLDAQRIHNLTAYLEALHEKAFANAEHTTLLLNCYTKLKDVKKLDKFIQLDEVIDAKKTKSDSDSGDLTPRNGAAA--------------------------------------NLN------------FDVETAISVLWE-NYPQHALTLAKKHEEHSWYLKIQLDHISYVDSEDSAALSESEKERVADALEYIEHLSFSEADSNLRKYGRTLVTHMPAPTTELLKLLCTGKF 654 The following BLAST results are available for this feature:
BLAST of EWM24928.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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