EWM24941.1, cds5741 (CDS) Nannochloropsis gaditana

Overview
NameEWM24941.1
Unique Namecds5741
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:766694..766700 +
Alignment locationCM002466.1:766894..767090 +
Alignment locationCM002466.1:767278..767577 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24941.1
Productlipid droplet surface protein
Orig transcript idgnl|cribi|Naga_100086g4.3841.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:766694..766700 +
CM002466.1supercontigCM002466.1:766894..767090 +
CM002466.1supercontigCM002466.1:767278..767577 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM24941.1 vs. NCBI_GenBank
Match: gi|585106571|gb|EWM24941.1| (lipid droplet surface protein [Nannochloropsis gaditana])

HSP 1 Score: 324.709 bits (831), Expect = 3.867e-112
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 
Query:    1 MASETLSQDKMAGPVMTSSSATTPVGTVKPFKQPFKAVATLSQKTGQITKPIDPAISKTLDFVYSGYTSVKTQVDKAPKVNPYLLIAAGLFLSCVVSISLLIPAILFFPVTIFLGIATSFALIALAPAFLIVAWVLISSAPMQDKVVVPTLDKVLTNKKMAKILLKE 167
            MASETLSQDKMAGPVMTSSSATTPVGTVKPFKQPFKAVATLSQKTGQITKPIDPAISKTLDFVYSGYTSVKTQVDKAPKVNPYLLIAAGLFLSCVVSISLLIPAILFFPVTIFLGIATSFALIALAPAFLIVAWVLISSAPMQDKVVVPTLDKVLTNKKMAKILLKE
Sbjct:    1 MASETLSQDKMAGPVMTSSSATTPVGTVKPFKQPFKAVATLSQKTGQITKPIDPAISKTLDFVYSGYTSVKTQVDKAPKVNPYLLIAAGLFLSCVVSISLLIPAILFFPVTIFLGIATSFALIALAPAFLIVAWVLISSAPMQDKVVVPTLDKVLTNKKMAKILLKE 167
[Close]
BLAST of EWM24941.1 vs. NCBI_GenBank
Match: gi|377774508|gb|AFB75402.1| (lipid droplet surface protein [Nannochloropsis sp. CCMP1779])

HSP 1 Score: 245.358 bits (625), Expect = 6.248e-81
Identity = 121/158 (76.58%), Postives = 139/158 (87.97%), Query Frame = 0 
Query:   11 MAGPVMTSS-SATTPVGTVKPFKQPFKAVATLSQKTGQITKPIDPAISKTLDFVYSGYTSVKTQVDKAPKVNPYLLIAAGLFLSCVVSISLLIPAILFFPVTIFLGIATSFALIALAPAFLIVAWVLISSAPMQDKVVVPTLDKVLTNKKMAKILLKE 167
            MAGP+MTS+ SATTP G   PFKQPFK VATLS KTG ITKPIDPAISKT+DFVY+GY++VKT+VDKAPKVNPYLLIA GL LSC++S+ LL+PA++FFPVTIFLG+ATSFALIALAP   +  W+LISSAP+QDKVVVP LDKVL NKK+AK LLKE
Sbjct:    1 MAGPIMTSAPSATTPTGKTMPFKQPFKTVATLSAKTGNITKPIDPAISKTIDFVYNGYSTVKTKVDKAPKVNPYLLIAGGLVLSCIISMCLLVPAVIFFPVTIFLGVATSFALIALAPVAFVFGWILISSAPIQDKVVVPALDKVLANKKVAKFLLKE 158
The following BLAST results are available for this feature:
BLAST of EWM24941.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106571|gb|EWM24941.1|3.867e-112100.00lipid droplet surface protein [Nannochloropsis gad... [more]
gi|377774508|gb|AFB75402.1|6.248e-8176.58lipid droplet surface protein [Nannochloropsis sp.... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5756rna5756Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications