EWM24942.1, cds5738 (CDS) Nannochloropsis gaditana

Overview
NameEWM24942.1
Unique Namecds5738
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:761208..761380 +
Alignment locationCM002466.1:761633..761779 +
Alignment locationCM002466.1:762020..762139 +
Alignment locationCM002466.1:762436..762492 +
Alignment locationCM002466.1:762665..762713 +
Alignment locationCM002466.1:762820..762825 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24942.1
Productsignal peptidase complex catalytic subunit sec11c
Orig transcript idgnl|cribi|Naga_100086g8.3842.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:761208..761380 +
CM002466.1supercontigCM002466.1:761633..761779 +
CM002466.1supercontigCM002466.1:762020..762139 +
CM002466.1supercontigCM002466.1:762436..762492 +
CM002466.1supercontigCM002466.1:762665..762713 +
CM002466.1supercontigCM002466.1:762820..762825 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0008236serine-type peptidase activity
GO:0008233peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0006465signal peptide processing
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR015927Peptidase_S24_S26A/B/C
IPR019756Pept_S26A_signal_pept_1_Ser-AS
IPR019759Peptidase_S24_S26
IPR028360Peptidase_S24/S26_b-rbn
IPR001733Peptidase_S26B
Homology
BLAST of EWM24942.1 vs. NCBI_GenBank
Match: gi|585106572|gb|EWM24942.1| (signal peptidase complex catalytic subunit sec11c [Nannochloropsis gaditana])

HSP 1 Score: 368.622 bits (945), Expect = 5.320e-129
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query:    1 MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQKEDGKVELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLKYVLVGIMGLFVLTNKES 183
            MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQKEDGKVELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLKYVLVGIMGLFVLTNKES
Sbjct:    1 MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQKEDGKVELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLKYVLVGIMGLFVLTNKES 183          
BLAST of EWM24942.1 vs. NCBI_GenBank
Match: gi|553180765|ref|XP_005853458.1| (signal peptidase, endoplasmic reticulum-type [Nannochloropsis gaditana CCMP526] >gi|422295602|gb|EKU22901.1| signal peptidase, endoplasmic reticulum-type [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 343.199 bits (879), Expect = 2.677e-116
Identity = 167/173 (96.53%), Postives = 168/173 (97.11%), Query Frame = 0
Query:    1 MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQKEDGKVELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLKYVLVGIM 173
            MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQKEDGKVELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLK  +   M
Sbjct:    1 MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQKEDGKVELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLKTSIAAAM 173          
BLAST of EWM24942.1 vs. NCBI_GenBank
Match: gi|676388195|ref|XP_009037376.1| (hypothetical protein AURANDRAFT_27033 [Aureococcus anophagefferens] >gi|323452139|gb|EGB08014.1| hypothetical protein AURANDRAFT_27033 [Aureococcus anophagefferens])

HSP 1 Score: 309.686 bits (792), Expect = 1.311e-105
Identity = 155/192 (80.73%), Postives = 167/192 (86.98%), Query Frame = 0
Query:    3 EIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQKEDGKVELLTKGDNNRVGDRGLYAPGQLWLNREDILGR-----------AAGTLRYLGMVTIILNDYPMLKYVLVGIMGLFVLTNKES 183
            EIV  Q+ ELKKLW++ R+LL Q LNLAMIVFSALMIWKGLMF+TKSESPVVVVLSGSMEPAFQRGDILFLNNQD+PIRVGE+VVFKIKDRDIPIVHRV++VH+K DG VELLTKGDNNRV DRGLYAPGQLWL RED+LGR           A GTLRY+GMVTIILNDYP LKYVLV IMGLFVLTNKE 
Sbjct:    2 EIVDQQIFELKKLWKNKRLLLHQGLNLAMIVFSALMIWKGLMFVTKSESPVVVVLSGSMEPAFQRGDILFLNNQDNPIRVGEVVVFKIKDRDIPIVHRVMKVHEKADGAVELLTKGDNNRVDDRGLYAPGQLWLAREDVLGRAIRGGNKMIQGAIGTLRYVGMVTIILNDYPALKYVLVSIMGLFVLTNKEE 193          
BLAST of EWM24942.1 vs. NCBI_GenBank
Match: gi|224009546|ref|XP_002293731.1| (microsomal signal peptidase [Thalassiosira pseudonana CCMP1335] >gi|220970403|gb|EED88740.1| microsomal signal peptidase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 293.893 bits (751), Expect = 1.541e-99
Identity = 144/179 (80.45%), Postives = 160/179 (89.39%), Query Frame = 0
Query:    4 IVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQKEDGKVELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLKYVLVGIMGLFVLTNKE 182
            ++  Q+ ELKKLW + R L  Q LNLAMIVFSALMIWKGLMF+TKSESPVVVVLSGSMEPAFQRGDILFLNN  + + VG++VVFKIKDRDIPIVHR+L+VH+K DG VELLTKGDNNRV DRGLYAPGQLWL REDILGRA GTLRY+GMVTI LNDYP+LKYVLVG+MGLFVLT+KE
Sbjct:    1 MIDKQVIELKKLWANKRQLTFQLLNLAMIVFSALMIWKGLMFMTKSESPVVVVLSGSMEPAFQRGDILFLNNSVEKVYVGDVVVFKIKDRDIPIVHRILKVHEKPDGHVELLTKGDNNRVDDRGLYAPGQLWLEREDILGRAVGTLRYVGMVTIALNDYPVLKYVLVGMMGLFVLTSKE 179          
BLAST of EWM24942.1 vs. NCBI_GenBank
Match: gi|1210524708|dbj|GAX16608.1| (signal peptidase, endoplasmic reticulum-type [Fistulifera solaris])

HSP 1 Score: 289.271 bits (739), Expect = 9.198e-98
Identity = 143/176 (81.25%), Postives = 158/176 (89.77%), Query Frame = 0
Query:    8 QLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVH-QKEDGKVELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLKYVLVGIMGLFVLTNKE 182
            Q+ ELKKLW + R L  Q LNLAMIVFSALMIWKGLMF+TKSESPVVVVLSGSMEPAFQRGDILFLNN    + VG++VVFKIKDRDIPIVHR+L+VH  +E GKVELLTKGDNNRV DRGLYAPGQLWLNR+DILG+A GTLRY+GMVTI LNDYP+LKYVLVG+MGLFVLT+KE
Sbjct:    4 QVYELKKLWSNKRQLTFQVLNLAMIVFSALMIWKGLMFVTKSESPVVVVLSGSMEPAFQRGDILFLNNAVHEVHVGDVVVFKIKDRDIPIVHRILKVHLDQETGKVELLTKGDNNRVDDRGLYAPGQLWLNRDDILGKAVGTLRYVGMVTIALNDYPVLKYVLVGLMGLFVLTSKE 179          
BLAST of EWM24942.1 vs. NCBI_GenBank
Match: gi|299473413|emb|CBN77811.1| (Sec11 homolog, catalytic subunit of the Signal Peptidase Complex [Ectocarpus siliculosus])

HSP 1 Score: 286.96 bits (733), Expect = 9.649e-97
Identity = 138/183 (75.41%), Postives = 159/183 (86.89%), Query Frame = 0
Query:    1 MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQKEDGKVELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLKYVLVGIMGLFVLTNKES 183
            M + V  Q+ ELKKLW + R L  Q LNLAMIV SALMIWK LM +TKSESPVVVVLSGSMEPAFQRGDILFL+N D+P+R GE+VVFKIKDR+IPIVHRV+ VH+K DG + +LTKGD+N+V DRGLY PGQ+WL+REDILGRA GTLRY+GMVTIILNDYP LKYVLVG+MGLFVLTN+E+
Sbjct:    1 MVDFVDKQVDELKKLWHNKRQLAFQGLNLAMIVLSALMIWKSLMVVTKSESPVVVVLSGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEKPDGSISVLTKGDSNKVNDRGLYVPGQMWLSREDILGRARGTLRYVGMVTIILNDYPPLKYVLVGLMGLFVLTNREA 183          
BLAST of EWM24942.1 vs. NCBI_GenBank
Match: gi|219130256|ref|XP_002185285.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403200|gb|EEC43154.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 281.182 bits (718), Expect = 1.804e-94
Identity = 139/183 (75.96%), Postives = 161/183 (87.98%), Query Frame = 0
Query:    1 MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQKEDG-KVELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLKYVLVGIMGLFVLTNKE 182
            +++I+  Q+ ELKKLW + R L  Q LNLAMIVFSALMIWKGLMF+T+SESPVVVVLSGSMEPAFQRGDILFL+N    + VG++VVFKIKDRDIPIVHR+L+VH   D  +V+LLTKGDNNRV DRGLYAPGQLWLNR+DILG+A GTLRY+GMVTI LNDYP+LKYVLVG+MGLFVLT+KE
Sbjct:    2 IKDILDKQVFELKKLWANKRQLTFQVLNLAMIVFSALMIWKGLMFVTQSESPVVVVLSGSMEPAFQRGDILFLHNAVREVHVGDVVVFKIKDRDIPIVHRILKVHLDTDTFQVDLLTKGDNNRVDDRGLYAPGQLWLNRDDILGKAVGTLRYVGMVTIALNDYPVLKYVLVGMMGLFVLTSKE 184          
BLAST of EWM24942.1 vs. NCBI_GenBank
Match: gi|1210511827|dbj|GAX29067.1| (signal peptidase, endoplasmic reticulum-type [Fistulifera solaris])

HSP 1 Score: 276.174 bits (705), Expect = 1.405e-92
Identity = 143/176 (81.25%), Postives = 158/176 (89.77%), Query Frame = 0
Query:    8 QLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVH-QKEDGKVELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLKYVLVGIMGLFVLTNKE 182
            Q+ ELKKLW + R L  Q LNLAMIVFSALMIWKGLMF+TKSESPVVVVLSGSMEPAFQRGDILFLNN    + VG++VVFKIKDRDIPIVHR+L+VH  +E GKVELLTKGDNNRV DRGLYAPGQLWLNR+DILG+A GTLRY+GMVTI LNDYP+LKYVLVG+MGLFVLT+KE
Sbjct:    4 QVYELKKLWSNKRQLTFQVLNLAMIVFSALMIWKGLMFVTKSESPVVVVLSGSMEPAFQRGDILFLNNAVHDVHVGDVVVFKIKDRDIPIVHRILKVHLDQETGKVELLTKGDNNRVDDRGLYAPGQLWLNRDDILGKAVGTLRYVGMVTIALNDYPVLKYVLVGLMGLFVLTSKE 179          
BLAST of EWM24942.1 vs. NCBI_GenBank
Match: gi|1072231294|gb|OEU16026.1| (signal peptidase I [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 275.018 bits (702), Expect = 5.122e-92
Identity = 142/175 (81.14%), Postives = 155/175 (88.57%), Query Frame = 0
Query:    8 QLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQKEDGKVELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLKYVLVGIMGLFVLTNKE 182
            Q+ ELKKLW + R LL Q LNLAMIVFSALMIWK LM  TKSESPVVVVLSGSMEPAFQRGDILFLNN  D + VG++VVFKIKDRDIPIVHR+L+VH+  DGKVELLTKGDNNRV DRGLYAPGQLWL REDILG+  GTLRY+GMVTI LNDYP+LKYVLVG+MGLFVLT+KE
Sbjct:    5 QVIELKKLWANKRQLLFQLLNLAMIVFSALMIWKALMCYTKSESPVVVVLSGSMEPAFQRGDILFLNNSVDQVGVGDVVVFKIKDRDIPIVHRILKVHEDSDGKVELLTKGDNNRVDDRGLYAPGQLWLEREDILGKCVGTLRYVGMVTIALNDYPVLKYVLVGMMGLFVLTSKE 179          
BLAST of EWM24942.1 vs. NCBI_GenBank
Match: gi|873223927|emb|CEM27628.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 245.358 bits (625), Expect = 2.682e-80
Identity = 120/180 (66.67%), Postives = 139/180 (77.22%), Query Frame = 0
Query:    3 EIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQKEDGKVELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLKYVLVGIMGLFVLTNKE 182
            + V+    E + L+  PR  + Q LNL  IVFSALM+WKGLM +T SESPVVVVLSGSMEP F RGDILFLNN D P+  G++VVFKIK RDIPIVHRVLEVH+   G V++LTKGDNN V DRGLYAPGQLWLN+ DI+GRA   L Y+GMVTI LNDYP LK+VLVG MG FV+  +E
Sbjct:    2 DTVRQYWDEFRALFSKPRQFVQQILNLCCIVFSALMLWKGLMVITGSESPVVVVLSGSMEPGFYRGDILFLNNPDTPVLPGDVVVFKIKGRDIPIVHRVLEVHETGKGDVKILTKGDNNDVDDRGLYAPGQLWLNKSDIMGRAIAFLPYVGMVTIWLNDYPWLKFVLVGTMGFFVIIGRE 181          
The following BLAST results are available for this feature:
BLAST of EWM24942.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106572|gb|EWM24942.1|5.320e-129100.00signal peptidase complex catalytic subunit sec11c ... [more]
gi|553180765|ref|XP_005853458.1|2.677e-11696.53signal peptidase, endoplasmic reticulum-type [Nann... [more]
gi|676388195|ref|XP_009037376.1|1.311e-10580.73hypothetical protein AURANDRAFT_27033 [Aureococcus... [more]
gi|224009546|ref|XP_002293731.1|1.541e-9980.45microsomal signal peptidase [Thalassiosira pseudon... [more]
gi|1210524708|dbj|GAX16608.1|9.198e-9881.25signal peptidase, endoplasmic reticulum-type [Fist... [more]
gi|299473413|emb|CBN77811.1|9.649e-9775.41Sec11 homolog, catalytic subunit of the Signal Pep... [more]
gi|219130256|ref|XP_002185285.1|1.804e-9475.96predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210511827|dbj|GAX29067.1|1.405e-9281.25signal peptidase, endoplasmic reticulum-type [Fist... [more]
gi|1072231294|gb|OEU16026.1|5.122e-9281.14signal peptidase I [Fragilariopsis cylindrus CCMP1... [more]
gi|873223927|emb|CEM27628.1|2.682e-8066.67unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5753rna5753Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications