EWM24948.1, cds5734 (CDS) Nannochloropsis gaditana

Overview
NameEWM24948.1
Unique Namecds5734
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:750970..753237 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24948.1
Productmyb-like dna-binding domain containing protein
Orig transcript idgnl|cribi|Naga_100086g13.3848.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:750970..753237 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|585106578|gb|EWM24948.1| (myb-like dna-binding domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1530.38 bits (3961), Expect = 0.000e+0
Identity = 755/755 (100.00%), Postives = 755/755 (100.00%), Query Frame = 0
Query:    1 MEENHDHLLQAPKAAIGYEDNLEGGRGGRKGRVQVHGGGLRTTMSTVASVGEGLKRRASGKPEKPRQGALHDPLGHDDDDAFRELDECFHNADGLMPRVSREEDLVYLGGKGGPALFALHHQGQAGMSPPLHESGDLNVSGSEGEKLSNRGVFLTGKEAAKLRSREPRAGDTVSRGETGGDIHRTESASSDQTSGCDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERKPARSQGWVEGKGGAGGRGKKTGSSHASPAVDGARSTRRAQGYPNLNPDLFPGPTAGALAQGGEEDSVTEACSGSDSGGGTTCSTTSSSSSSAVAAPGHTPGSGHNHHHHHHHHHHHLHPEDVAETAGPLGMGKALSGGVQGAGKTKIPPETHGRGGSSAFISASLGPPVASTAPKRASPPSREEHVPALDTAEESLPGESPCAATALSSTALSLAVPLTVGGVQHFLTAQRALAQHRGEERQWADGTDVPPILYHEGVAYVPVATTTLPSPCGPPPSASSVKSPTVGQAGPMRAWEAAKKNVICLERLTEHQALMQHHLRLQQQRLTMERRREEAVVNEACGLVDLDGLPVADHEQESAGSGGARNIIHHHHHDDEQQEQDEDEEAEAKVEAEVGGLDLLHRHYHHHHHHHHPAGGGDEEEEDLAIVPPTFEEDGL 755
            MEENHDHLLQAPKAAIGYEDNLEGGRGGRKGRVQVHGGGLRTTMSTVASVGEGLKRRASGKPEKPRQGALHDPLGHDDDDAFRELDECFHNADGLMPRVSREEDLVYLGGKGGPALFALHHQGQAGMSPPLHESGDLNVSGSEGEKLSNRGVFLTGKEAAKLRSREPRAGDTVSRGETGGDIHRTESASSDQTSGCDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERKPARSQGWVEGKGGAGGRGKKTGSSHASPAVDGARSTRRAQGYPNLNPDLFPGPTAGALAQGGEEDSVTEACSGSDSGGGTTCSTTSSSSSSAVAAPGHTPGSGHNHHHHHHHHHHHLHPEDVAETAGPLGMGKALSGGVQGAGKTKIPPETHGRGGSSAFISASLGPPVASTAPKRASPPSREEHVPALDTAEESLPGESPCAATALSSTALSLAVPLTVGGVQHFLTAQRALAQHRGEERQWADGTDVPPILYHEGVAYVPVATTTLPSPCGPPPSASSVKSPTVGQAGPMRAWEAAKKNVICLERLTEHQALMQHHLRLQQQRLTMERRREEAVVNEACGLVDLDGLPVADHEQESAGSGGARNIIHHHHHDDEQQEQDEDEEAEAKVEAEVGGLDLLHRHYHHHHHHHHPAGGGDEEEEDLAIVPPTFEEDGL
Sbjct:    1 MEENHDHLLQAPKAAIGYEDNLEGGRGGRKGRVQVHGGGLRTTMSTVASVGEGLKRRASGKPEKPRQGALHDPLGHDDDDAFRELDECFHNADGLMPRVSREEDLVYLGGKGGPALFALHHQGQAGMSPPLHESGDLNVSGSEGEKLSNRGVFLTGKEAAKLRSREPRAGDTVSRGETGGDIHRTESASSDQTSGCDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERKPARSQGWVEGKGGAGGRGKKTGSSHASPAVDGARSTRRAQGYPNLNPDLFPGPTAGALAQGGEEDSVTEACSGSDSGGGTTCSTTSSSSSSAVAAPGHTPGSGHNHHHHHHHHHHHLHPEDVAETAGPLGMGKALSGGVQGAGKTKIPPETHGRGGSSAFISASLGPPVASTAPKRASPPSREEHVPALDTAEESLPGESPCAATALSSTALSLAVPLTVGGVQHFLTAQRALAQHRGEERQWADGTDVPPILYHEGVAYVPVATTTLPSPCGPPPSASSVKSPTVGQAGPMRAWEAAKKNVICLERLTEHQALMQHHLRLQQQRLTMERRREEAVVNEACGLVDLDGLPVADHEQESAGSGGARNIIHHHHHDDEQQEQDEDEEAEAKVEAEVGGLDLLHRHYHHHHHHHHPAGGGDEEEEDLAIVPPTFEEDGL 755          
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|553179728|ref|XP_005852752.1| (myb-like dna-binding domain containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295780|gb|EKU23079.1| myb-like dna-binding domain containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 568.155 bits (1463), Expect = 0.000e+0
Identity = 273/276 (98.91%), Postives = 275/276 (99.64%), Query Frame = 0
Query:   44 MSTVASVGEGLKRRASGKPEKPRQGALHDPLGHDDDDAFRELDECFHNADGLMPRVSREEDLVYLGGKGGPALFALHHQGQAGMSPPLHESGDLNVSGSEGEKLSNRGVFLTGKEAAKLRSREPRAGDTVSRGETGGDIHRTESASSDQTSGCDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERK 319
            MSTVASVGEGLKRRASGKPEKPRQGALHDPLGHDD+DAFRELDECFHNADGLMPRVSREEDLVYLGGKGGPALFALHHQGQAGMSPPLHESGDLNVSGSEGEKLSNRGVFLTGKEAAKLRSREP AGDTVSRGETGGDIHRTESASSDQTSGCDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANK+RKRERK
Sbjct:    1 MSTVASVGEGLKRRASGKPEKPRQGALHDPLGHDDEDAFRELDECFHNADGLMPRVSREEDLVYLGGKGGPALFALHHQGQAGMSPPLHESGDLNVSGSEGEKLSNRGVFLTGKEAAKLRSREPLAGDTVSRGETGGDIHRTESASSDQTSGCDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKMRKRERK 276          
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|585112705|gb|EWM30072.1| (transcriptional activator myb [Nannochloropsis gaditana])

HSP 1 Score: 109.768 bits (273), Expect = 1.302e-24
Identity = 52/112 (46.43%), Postives = 73/112 (65.18%), Query Frame = 0
Query:  211 SKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERKPAR 322
            +K+  W  EED  L+ LV   G R WG I+ HF+NRN KQCHQRW+Y L P++    WT EED  I+ +Q  +GNKW++IA  + GRTG+A++NR     N + KR+ + A+
Sbjct:    5 NKRHTWTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNR----YNFLSKRQLEEAQ 112          
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|1173950211|gb|OQR98188.1| (hypothetical protein ACHHYP_09062 [Achlya hypogyna])

HSP 1 Score: 110.153 bits (274), Expect = 3.367e-23
Identity = 64/174 (36.78%), Postives = 93/174 (53.45%), Query Frame = 0
Query:  147 LSNRGVFLTGKEAAKLRSREPRAGDTVSRGETGGDIHRTESASSDQTSGCDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERKP 320
            +  R    T +E  KLR      G    R +  GD+ +T SA       C +    + T  + L  KRPW   EDE L+ +V + GAR WG IA +   RNGKQC +RW+  LSP ++ G WT  ED++++  Q + GN+WA+I   +PGRT +A+KN  +        R+R+P
Sbjct:    1 MVGRNHLWTSEEDEKLRLGVLTYG--ARRWKHVGDMLQTRSAKE-----CHARWHELQTCTSKL--KRPWLAFEDELLQRVVGQHGARRWGFIASYIPGRNGKQCRERWHNHLSPNINKGPWTELEDKRLIELQAIHGNRWAQIMKELPGRTDNAIKNHWYSNVKVGHPRQREP 165          
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|1173931710|gb|OQR84003.1| (MYB DNA binding protein/ transcription factor, partial [Thraustotheca clavata])

HSP 1 Score: 107.071 bits (266), Expect = 3.935e-23
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 0
Query:  213 KRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERK 319
            KRPW   EDE L+ +V + GAR WG IA +   RNGKQC +RW+  LSP ++ G WT EED  +V  Q   GN+WA+I   +PGRT +A+KN  +     ++  E K
Sbjct:   58 KRPWLAFEDELLQRIVGKHGARRWGFIASYIPGRNGKQCRERWHNHLSPNINKGPWTVEEDRMLVELQSKYGNRWAQIMKELPGRTDNAIKNHWYSNVKVLKFNELK 164          
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|855316683|ref|XP_012899258.1| (uncharacterized protein [Blastocystis hominis] >gi|300123939|emb|CBK25210.2| unnamed protein product [Blastocystis hominis])

HSP 1 Score: 114.005 bits (284), Expect = 8.682e-23
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 0
Query:  213 KRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIA--NKIRKR 316
            K PW  EED+ LR+LV + G + W  IA H   R GKQC +RW   LSP V    WT EEDE ++N Q  +GNKW+ I+  +PGR+ +AVKNR + IA  N +RK+
Sbjct:   63 KGPWSEEEDKLLRSLVEKHGPKKWSTIASHINGRIGKQCRERWLNHLSPDVSKDVWTEEEDEILINAQFQMGNKWSFISKLLPGRSENAVKNRYNSIASRNGVRKK 168          
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|695405965|ref|XP_009523975.1| (hypothetical protein PHYSODRAFT_435717, partial [Phytophthora sojae] >gi|348681442|gb|EGZ21258.1| hypothetical protein PHYSODRAFT_435717, partial [Phytophthora sojae])

HSP 1 Score: 104.76 bits (260), Expect = 1.070e-22
Identity = 48/109 (44.04%), Postives = 65/109 (59.63%), Query Frame = 0
Query:  196 CDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKN 304
            C    + + +  T +  KRPW   ED+ +  LV + G   W  IA + ENRNGKQC +RW+  L+P +    WTA+ED+ IV  Q   GN WA+I  H+PGRT +AVKN
Sbjct:   32 CSKRWNKLQSLDTVV--KRPWTAVEDQQMLELVAKYGPSKWAVIASYLENRNGKQCRERWHNQLNPAIKKTPWTADEDDTIVRLQAQFGNSWAKITAHLPGRTDNAVKN 138          
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|950893562|ref|XP_014528231.1| (MYB family transcription factor [Blastocystis sp. subtype 4] >gi|902862842|gb|KNB44788.1| MYB family transcription factor [Blastocystis sp. subtype 4])

HSP 1 Score: 109.768 bits (273), Expect = 1.153e-22
Identity = 53/133 (39.85%), Postives = 77/133 (57.89%), Query Frame = 0
Query:  190 SDQTSGCDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERKPAR 322
            S+    C + AS   +  T  ++K  W  EED  L +LV++ G + W  I+E    R+GKQC QRW Y L P++   AW+ EED  ++N Q  +GNKW+ I  H+PGR+ + VKNR H I ++I  R +   R
Sbjct:   35 SNNLKMCPNLASQFES-TTRTTRKDMWTQEEDILLTSLVNKYGTKHWKMISESIPGRSGKQCRQRWCYNLDPSIKKQAWSQEEDLILMNLQREMGNKWSIIKKHLPGRSENDVKNRYHCIRSRIHTRLKTQLR 166          
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|123487972|ref|XP_001325063.1| (Myb-like DNA-binding domain containing protein [Trichomonas vaginalis G3] >gi|121907956|gb|EAY12840.1| Myb-like DNA-binding domain containing protein [Trichomonas vaginalis G3])

HSP 1 Score: 103.99 bits (258), Expect = 2.621e-22
Identity = 49/110 (44.55%), Postives = 68/110 (61.82%), Query Frame = 0
Query:  213 KRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERKPAR 322
            KR W  +EDE L + VH+ G   W QIA+H   R+GKQC +RW   L P+++   W+AEED K++  Q   GNKWA IA+ +PGRT  + KNR   +  +  +RER  A+
Sbjct:   11 KRKWSADEDELLLSCVHKSGPYMWDQIAKHIPGRSGKQCRERWITVLDPSINRDEWSAEEDAKLLILQSQQGNKWASIASSMPGRTAISAKNRFKFLKRRNARRERAIAK 120          
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|953499273|emb|CEG39585.1| (myblike dnabinding protein [Plasmopara halstedii])

HSP 1 Score: 109.383 bits (272), Expect = 2.835e-22
Identity = 57/129 (44.19%), Postives = 74/129 (57.36%), Query Frame = 0
Query:  190 SDQTSGCDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRER 318
            SD +  C    +S S    +   KR W PEEDE L   + R GA DW  IA     R GKQC +RW   LSP V+  AWT EEDE I + +  +GN+WA IA  +PGRT +A+KNR +   + +R+R R
Sbjct:  167 SDMSPQCKRIKTSASNSKLS---KRQWNPEEDEALEYAIQRMGANDWTAIARLLPGRCGKQCRERWVNHLSPAVNKEAWTEEEDELIFSTRDRIGNRWAEIARLLPGRTDNAIKNRYY---STMRRRGR 289          
The following BLAST results are available for this feature:
BLAST of EWM24948.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106578|gb|EWM24948.1|0.000e+0100.00myb-like dna-binding domain containing protein [Na... [more]
gi|553179728|ref|XP_005852752.1|0.000e+098.91myb-like dna-binding domain containing protein, pa... [more]
gi|585112705|gb|EWM30072.1|1.302e-2446.43transcriptional activator myb [Nannochloropsis gad... [more]
gi|1173950211|gb|OQR98188.1|3.367e-2336.78hypothetical protein ACHHYP_09062 [Achlya hypogyna... [more]
gi|1173931710|gb|OQR84003.1|3.935e-2345.79MYB DNA binding protein/ transcription factor, par... [more]
gi|855316683|ref|XP_012899258.1|8.682e-2349.06uncharacterized protein [Blastocystis hominis] >gi... [more]
gi|695405965|ref|XP_009523975.1|1.070e-2244.04hypothetical protein PHYSODRAFT_435717, partial [P... [more]
gi|950893562|ref|XP_014528231.1|1.153e-2239.85MYB family transcription factor [Blastocystis sp. ... [more]
gi|123487972|ref|XP_001325063.1|2.621e-2244.55Myb-like DNA-binding domain containing protein [Tr... [more]
gi|953499273|emb|CEG39585.1|2.835e-2244.19myblike dnabinding protein [Plasmopara halstedii][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5749rna5749Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications