EWM24948.1, cds5734 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|585106578|gb|EWM24948.1| (myb-like dna-binding domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 1530.38 bits (3961), Expect = 0.000e+0 Identity = 755/755 (100.00%), Postives = 755/755 (100.00%), Query Frame = 0
Query: 1 MEENHDHLLQAPKAAIGYEDNLEGGRGGRKGRVQVHGGGLRTTMSTVASVGEGLKRRASGKPEKPRQGALHDPLGHDDDDAFRELDECFHNADGLMPRVSREEDLVYLGGKGGPALFALHHQGQAGMSPPLHESGDLNVSGSEGEKLSNRGVFLTGKEAAKLRSREPRAGDTVSRGETGGDIHRTESASSDQTSGCDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERKPARSQGWVEGKGGAGGRGKKTGSSHASPAVDGARSTRRAQGYPNLNPDLFPGPTAGALAQGGEEDSVTEACSGSDSGGGTTCSTTSSSSSSAVAAPGHTPGSGHNHHHHHHHHHHHLHPEDVAETAGPLGMGKALSGGVQGAGKTKIPPETHGRGGSSAFISASLGPPVASTAPKRASPPSREEHVPALDTAEESLPGESPCAATALSSTALSLAVPLTVGGVQHFLTAQRALAQHRGEERQWADGTDVPPILYHEGVAYVPVATTTLPSPCGPPPSASSVKSPTVGQAGPMRAWEAAKKNVICLERLTEHQALMQHHLRLQQQRLTMERRREEAVVNEACGLVDLDGLPVADHEQESAGSGGARNIIHHHHHDDEQQEQDEDEEAEAKVEAEVGGLDLLHRHYHHHHHHHHPAGGGDEEEEDLAIVPPTFEEDGL 755
MEENHDHLLQAPKAAIGYEDNLEGGRGGRKGRVQVHGGGLRTTMSTVASVGEGLKRRASGKPEKPRQGALHDPLGHDDDDAFRELDECFHNADGLMPRVSREEDLVYLGGKGGPALFALHHQGQAGMSPPLHESGDLNVSGSEGEKLSNRGVFLTGKEAAKLRSREPRAGDTVSRGETGGDIHRTESASSDQTSGCDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERKPARSQGWVEGKGGAGGRGKKTGSSHASPAVDGARSTRRAQGYPNLNPDLFPGPTAGALAQGGEEDSVTEACSGSDSGGGTTCSTTSSSSSSAVAAPGHTPGSGHNHHHHHHHHHHHLHPEDVAETAGPLGMGKALSGGVQGAGKTKIPPETHGRGGSSAFISASLGPPVASTAPKRASPPSREEHVPALDTAEESLPGESPCAATALSSTALSLAVPLTVGGVQHFLTAQRALAQHRGEERQWADGTDVPPILYHEGVAYVPVATTTLPSPCGPPPSASSVKSPTVGQAGPMRAWEAAKKNVICLERLTEHQALMQHHLRLQQQRLTMERRREEAVVNEACGLVDLDGLPVADHEQESAGSGGARNIIHHHHHDDEQQEQDEDEEAEAKVEAEVGGLDLLHRHYHHHHHHHHPAGGGDEEEEDLAIVPPTFEEDGL
Sbjct: 1 MEENHDHLLQAPKAAIGYEDNLEGGRGGRKGRVQVHGGGLRTTMSTVASVGEGLKRRASGKPEKPRQGALHDPLGHDDDDAFRELDECFHNADGLMPRVSREEDLVYLGGKGGPALFALHHQGQAGMSPPLHESGDLNVSGSEGEKLSNRGVFLTGKEAAKLRSREPRAGDTVSRGETGGDIHRTESASSDQTSGCDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERKPARSQGWVEGKGGAGGRGKKTGSSHASPAVDGARSTRRAQGYPNLNPDLFPGPTAGALAQGGEEDSVTEACSGSDSGGGTTCSTTSSSSSSAVAAPGHTPGSGHNHHHHHHHHHHHLHPEDVAETAGPLGMGKALSGGVQGAGKTKIPPETHGRGGSSAFISASLGPPVASTAPKRASPPSREEHVPALDTAEESLPGESPCAATALSSTALSLAVPLTVGGVQHFLTAQRALAQHRGEERQWADGTDVPPILYHEGVAYVPVATTTLPSPCGPPPSASSVKSPTVGQAGPMRAWEAAKKNVICLERLTEHQALMQHHLRLQQQRLTMERRREEAVVNEACGLVDLDGLPVADHEQESAGSGGARNIIHHHHHDDEQQEQDEDEEAEAKVEAEVGGLDLLHRHYHHHHHHHHPAGGGDEEEEDLAIVPPTFEEDGL 755
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|553179728|ref|XP_005852752.1| (myb-like dna-binding domain containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295780|gb|EKU23079.1| myb-like dna-binding domain containing protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 568.155 bits (1463), Expect = 0.000e+0 Identity = 273/276 (98.91%), Postives = 275/276 (99.64%), Query Frame = 0
Query: 44 MSTVASVGEGLKRRASGKPEKPRQGALHDPLGHDDDDAFRELDECFHNADGLMPRVSREEDLVYLGGKGGPALFALHHQGQAGMSPPLHESGDLNVSGSEGEKLSNRGVFLTGKEAAKLRSREPRAGDTVSRGETGGDIHRTESASSDQTSGCDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERK 319
MSTVASVGEGLKRRASGKPEKPRQGALHDPLGHDD+DAFRELDECFHNADGLMPRVSREEDLVYLGGKGGPALFALHHQGQAGMSPPLHESGDLNVSGSEGEKLSNRGVFLTGKEAAKLRSREP AGDTVSRGETGGDIHRTESASSDQTSGCDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANK+RKRERK
Sbjct: 1 MSTVASVGEGLKRRASGKPEKPRQGALHDPLGHDDEDAFRELDECFHNADGLMPRVSREEDLVYLGGKGGPALFALHHQGQAGMSPPLHESGDLNVSGSEGEKLSNRGVFLTGKEAAKLRSREPLAGDTVSRGETGGDIHRTESASSDQTSGCDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKMRKRERK 276
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|585112705|gb|EWM30072.1| (transcriptional activator myb [Nannochloropsis gaditana]) HSP 1 Score: 109.768 bits (273), Expect = 1.302e-24 Identity = 52/112 (46.43%), Postives = 73/112 (65.18%), Query Frame = 0
Query: 211 SKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERKPAR 322
+K+ W EED L+ LV G R WG I+ HF+NRN KQCHQRW+Y L P++ WT EED I+ +Q +GNKW++IA + GRTG+A++NR N + KR+ + A+
Sbjct: 5 NKRHTWTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNR----YNFLSKRQLEEAQ 112
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|1173950211|gb|OQR98188.1| (hypothetical protein ACHHYP_09062 [Achlya hypogyna]) HSP 1 Score: 110.153 bits (274), Expect = 3.367e-23 Identity = 64/174 (36.78%), Postives = 93/174 (53.45%), Query Frame = 0
Query: 147 LSNRGVFLTGKEAAKLRSREPRAGDTVSRGETGGDIHRTESASSDQTSGCDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERKP 320
+ R T +E KLR G R + GD+ +T SA C + + T + L KRPW EDE L+ +V + GAR WG IA + RNGKQC +RW+ LSP ++ G WT ED++++ Q + GN+WA+I +PGRT +A+KN + R+R+P
Sbjct: 1 MVGRNHLWTSEEDEKLRLGVLTYG--ARRWKHVGDMLQTRSAKE-----CHARWHELQTCTSKL--KRPWLAFEDELLQRVVGQHGARRWGFIASYIPGRNGKQCRERWHNHLSPNINKGPWTELEDKRLIELQAIHGNRWAQIMKELPGRTDNAIKNHWYSNVKVGHPRQREP 165
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|1173931710|gb|OQR84003.1| (MYB DNA binding protein/ transcription factor, partial [Thraustotheca clavata]) HSP 1 Score: 107.071 bits (266), Expect = 3.935e-23 Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 0
Query: 213 KRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERK 319
KRPW EDE L+ +V + GAR WG IA + RNGKQC +RW+ LSP ++ G WT EED +V Q GN+WA+I +PGRT +A+KN + ++ E K
Sbjct: 58 KRPWLAFEDELLQRIVGKHGARRWGFIASYIPGRNGKQCRERWHNHLSPNINKGPWTVEEDRMLVELQSKYGNRWAQIMKELPGRTDNAIKNHWYSNVKVLKFNELK 164
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|855316683|ref|XP_012899258.1| (uncharacterized protein [Blastocystis hominis] >gi|300123939|emb|CBK25210.2| unnamed protein product [Blastocystis hominis]) HSP 1 Score: 114.005 bits (284), Expect = 8.682e-23 Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 0
Query: 213 KRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIA--NKIRKR 316
K PW EED+ LR+LV + G + W IA H R GKQC +RW LSP V WT EEDE ++N Q +GNKW+ I+ +PGR+ +AVKNR + IA N +RK+
Sbjct: 63 KGPWSEEEDKLLRSLVEKHGPKKWSTIASHINGRIGKQCRERWLNHLSPDVSKDVWTEEEDEILINAQFQMGNKWSFISKLLPGRSENAVKNRYNSIASRNGVRKK 168
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|695405965|ref|XP_009523975.1| (hypothetical protein PHYSODRAFT_435717, partial [Phytophthora sojae] >gi|348681442|gb|EGZ21258.1| hypothetical protein PHYSODRAFT_435717, partial [Phytophthora sojae]) HSP 1 Score: 104.76 bits (260), Expect = 1.070e-22 Identity = 48/109 (44.04%), Postives = 65/109 (59.63%), Query Frame = 0
Query: 196 CDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKN 304
C + + + T + KRPW ED+ + LV + G W IA + ENRNGKQC +RW+ L+P + WTA+ED+ IV Q GN WA+I H+PGRT +AVKN
Sbjct: 32 CSKRWNKLQSLDTVV--KRPWTAVEDQQMLELVAKYGPSKWAVIASYLENRNGKQCRERWHNQLNPAIKKTPWTADEDDTIVRLQAQFGNSWAKITAHLPGRTDNAVKN 138
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|950893562|ref|XP_014528231.1| (MYB family transcription factor [Blastocystis sp. subtype 4] >gi|902862842|gb|KNB44788.1| MYB family transcription factor [Blastocystis sp. subtype 4]) HSP 1 Score: 109.768 bits (273), Expect = 1.153e-22 Identity = 53/133 (39.85%), Postives = 77/133 (57.89%), Query Frame = 0
Query: 190 SDQTSGCDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERKPAR 322
S+ C + AS + T ++K W EED L +LV++ G + W I+E R+GKQC QRW Y L P++ AW+ EED ++N Q +GNKW+ I H+PGR+ + VKNR H I ++I R + R
Sbjct: 35 SNNLKMCPNLASQFES-TTRTTRKDMWTQEEDILLTSLVNKYGTKHWKMISESIPGRSGKQCRQRWCYNLDPSIKKQAWSQEEDLILMNLQREMGNKWSIIKKHLPGRSENDVKNRYHCIRSRIHTRLKTQLR 166
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|123487972|ref|XP_001325063.1| (Myb-like DNA-binding domain containing protein [Trichomonas vaginalis G3] >gi|121907956|gb|EAY12840.1| Myb-like DNA-binding domain containing protein [Trichomonas vaginalis G3]) HSP 1 Score: 103.99 bits (258), Expect = 2.621e-22 Identity = 49/110 (44.55%), Postives = 68/110 (61.82%), Query Frame = 0
Query: 213 KRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERKPAR 322
KR W +EDE L + VH+ G W QIA+H R+GKQC +RW L P+++ W+AEED K++ Q GNKWA IA+ +PGRT + KNR + + +RER A+
Sbjct: 11 KRKWSADEDELLLSCVHKSGPYMWDQIAKHIPGRSGKQCRERWITVLDPSINRDEWSAEEDAKLLILQSQQGNKWASIASSMPGRTAISAKNRFKFLKRRNARRERAIAK 120
BLAST of EWM24948.1 vs. NCBI_GenBank
Match: gi|953499273|emb|CEG39585.1| (myblike dnabinding protein [Plasmopara halstedii]) HSP 1 Score: 109.383 bits (272), Expect = 2.835e-22 Identity = 57/129 (44.19%), Postives = 74/129 (57.36%), Query Frame = 0
Query: 190 SDQTSGCDSHASSISTGATALSKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRER 318
SD + C +S S + KR W PEEDE L + R GA DW IA R GKQC +RW LSP V+ AWT EEDE I + + +GN+WA IA +PGRT +A+KNR + + +R+R R
Sbjct: 167 SDMSPQCKRIKTSASNSKLS---KRQWNPEEDEALEYAIQRMGANDWTAIARLLPGRCGKQCRERWVNHLSPAVNKEAWTEEEDELIFSTRDRIGNRWAEIARLLPGRTDNAIKNRYY---STMRRRGR 289 The following BLAST results are available for this feature:
BLAST of EWM24948.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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