EWM24954.1, cds5718 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|585106585|gb|EWM24954.1| (lag1 and cln8 lipid-sensing domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 678.707 bits (1750), Expect = 0.000e+0 Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query: 1 MEQFLIYRPGQVFPELTSIPPSSLQEASSSFDNLAADMYQDMLSGLSRFYTVESIDGEALFGIRLPLALAYGLLCTASFFGSGIVLGKVSATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDLVVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGVFYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKRSKPATEGSKSKKA 332
MEQFLIYRPGQVFPELTSIPPSSLQEASSSFDNLAADMYQDMLSGLSRFYTVESIDGEALFGIRLPLALAYGLLCTASFFGSGIVLGKVSATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDLVVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGVFYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKRSKPATEGSKSKKA
Sbjct: 1 MEQFLIYRPGQVFPELTSIPPSSLQEASSSFDNLAADMYQDMLSGLSRFYTVESIDGEALFGIRLPLALAYGLLCTASFFGSGIVLGKVSATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDLVVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGVFYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKRSKPATEGSKSKKA 332
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|470528252|ref|XP_004367876.1| (hypothetical protein ACA1_288420 [Acanthamoeba castellanii str. Neff] >gi|440804244|gb|ELR25121.1| hypothetical protein ACA1_288420 [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 91.6633 bits (226), Expect = 1.197e-17 Identity = 73/251 (29.08%), Postives = 117/251 (46.61%), Query Frame = 0
Query: 66 PLALAYGLLCTASFFGSGIVLGKVSATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFG---HTFSLLSIAPALDMYEKDTMRIMIGYMLYDLVVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLV-TFFVVRILVSPLLAYTYLAPGNRHLYDGRD------GVFYFQLFIVFAFAGLNYFWFYKLLTLIYRKAR 306
P A ++ TA + S + +VSATYR LP + + WDNR+VA HAV++ Y AF + +PL H +S + A TM GY ++D V+ + + L H L + + +L + G++ + E STP L+ W M+ +G+S+ FK L LLV +FF+ RI+ Y+ + + H Y G+ Y+ F + GLN +WFY ++ R +
Sbjct: 21 PYLAASTIIWTAIYLASAPISRRVSATYRGLPFKLKMQWDNRIVAFLHAVVICYAAFWGLLCDEPLKADHLHAYSTWAYA---------TMITACGYFIWDAVMCIIYFKEFQLGFLLHALGCLFTFLGSLDGVFMYYGYFYLTF---EASTPFLNLHWFMDKLGVSNSNPFKKLNAGLLVLSFFLFRIISG--CGYSAVVWQDIHRYIAATSNMANVGIMYYFYFAILLLNGLNCYWFYSIVKFATRAPK 257
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|1183325575|gb|ORX55343.1| (hypothetical protein BCR36DRAFT_410281 [Piromyces finnis]) HSP 1 Score: 78.5666 bits (192), Expect = 6.277e-13 Identity = 67/239 (28.03%), Postives = 109/239 (45.61%), Query Frame = 0
Query: 93 YRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKD------TMRIMIGYMLYDLVVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGVFYFQLFIVFAF---AGLNYFWFYKLLTLIYRKARGIKTPI--SSPVKKRS 320
Y +L R DW++R+VA HA+I+S + I L FG + D +K+ T+ I IGY ++D++ + + H L + T ++N G Y ++ + E ST LHT W+ + + L+ + + +L LLVTFF VRI + + + L + ++D Y L+ V LNY WFYK++ I++ K P S VKK +
Sbjct: 70 YLKLSNYKRKDWNSRVVAFIHAIIVS----PFCIFLICKFGFPWD----KNENDYSDKEINIFYSTISISIGYFMWDIIYSVGDYKKGGIGFVIHGFGAFLIYIFTFKSN--VLGHYAIMYLIYEFSTIFLHTYWVFDKIDLTGSIGQLISSLLLLVTFFTVRIAIGSIFIFKLL---HDIIFDREVCSVYLSLYFVLNIIPMQTLNYIWFYKMIYSIFKHFEPSKKPNHESKSVKKTN 295
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|727566137|ref|XP_010455434.1| (PREDICTED: transmembrane protein 56 [Camelina sativa] >gi|1109055821|ref|XP_019090673.1| PREDICTED: transmembrane protein 56 [Camelina sativa]) HSP 1 Score: 66.2402 bits (160), Expect = 6.767e-9 Identity = 65/237 (27.43%), Postives = 106/237 (44.73%), Query Frame = 0
Query: 91 ATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDL-VVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGV-------FYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKR 319
Y +L + R +W+NR + HAV+ S + Y +V+ F ++ + + M I +GY L DL ++ PA+ +FHH + + L S +Y +V L+E +TP ++ W ++T G A+ L +AL + + V RIL L Y ++ H+Y V FY L I A A +N WF+K+ + + KT S VKK+
Sbjct: 44 GVYGKLDSKVRMEWNNRGFSTFHAVLTSVASI-YLLVISEQFDENVHGDAVINSTTKLSESVMGISLGYFLSDLAMIFWHFPALGGIEYVFHHFLSMFAI--ILSVTSGQSQFYIFIVLLSEATTPFVNLRWYLDTSGQKGSKAYTLNGIALFLGWLVARIL---LFIYFFV-----HMYLHFHQVKQVFPLGFYSLLTIPPALAVMNLIWFWKITKGMIKTLSKAKT---SAVKKQ 266
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|727491827|ref|XP_010421956.1| (PREDICTED: transmembrane protein 56 [Camelina sativa] >gi|1109153703|ref|XP_019084055.1| PREDICTED: transmembrane protein 56 [Camelina sativa]) HSP 1 Score: 66.2402 bits (160), Expect = 7.447e-9 Identity = 65/237 (27.43%), Postives = 106/237 (44.73%), Query Frame = 0
Query: 91 ATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDL-VVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGV-------FYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKR 319
Y +L + R +W+NR + HAV+ S + Y +V+ F ++ + + M I +GY L DL ++ PA+ +FHH + + L S +Y +V L+E +TP ++ W ++T G A+ L +AL + + V RIL L Y ++ H+Y V FY L I A A +N WF+K+ + + KT S VKK+
Sbjct: 45 GVYGKLDSKVRMEWNNRGFSTFHAVLTSVASI-YLLVISDQFDENVHGDAVINSTTKLSESVMGISLGYFLSDLAMIFWHFPALGGIEYVFHHFLSMFAI--ILSVTSGQSQFYIFIVLLSEATTPFVNLRWYLDTSGQKGSKAYTLNGIALFLGWLVARIL---LFIYFFV-----HMYLHFHQVKQVFPLGFYSLLTIPPALAVMNLIWFWKITKGMIKTLSKAKT---SAVKKQ 267
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|727421600|ref|XP_010437167.1| (PREDICTED: transmembrane protein 56-like [Camelina sativa]) HSP 1 Score: 66.2402 bits (160), Expect = 8.026e-9 Identity = 65/237 (27.43%), Postives = 106/237 (44.73%), Query Frame = 0
Query: 91 ATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDL-VVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGV-------FYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKR 319
Y +L + R +W+NR + HAV+ S + Y +V+ F ++ + + M I +GY L DL ++ PA+ +FHH + + L S +Y +V L+E +TP ++ W ++T G A+ L +AL + + V RIL L Y ++ H+Y V FY L I A A +N WF+K+ + + KT S VKK+
Sbjct: 44 GVYGKLDSKVRMEWNNRGFSTFHAVLTSVASI-YLLVISDQFDENVHGDAVINSTTKLSESVMGISLGYFLSDLAMIFWHFPALGGIEYVFHHFLSMFAI--ILSVTSGQSQFYIFIVLLSEATTPFVNLRWYLDTSGQKGSKAYTLNGIALFLGWLVARIL---LFIYFFV-----HMYLHFHQVKQVFPLGFYSLLTIPPALAVMNLIWFWKITKGMIKTLSKAKT---SAVKKQ 266
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|565460942|ref|XP_006288470.1| (hypothetical protein CARUB_v10001728mg [Capsella rubella] >gi|482557176|gb|EOA21368.1| hypothetical protein CARUB_v10001728mg [Capsella rubella]) HSP 1 Score: 65.4698 bits (158), Expect = 1.326e-8 Identity = 66/248 (26.61%), Postives = 108/248 (43.55%), Query Frame = 0
Query: 91 ATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDL-VVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGV-------FYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKRSKPATEGSKSK 330
Y +L + R +W+NR + HAV+ S + Y +V+ F ++ + + M I +GY L DL ++ PA+ +FHH + + L S +Y +V L+E +TP ++ W ++T G A+ L +AL + + V RIL L Y ++ H+Y V FY L I A A +N WF+K+ +G+ +K SK T G K +
Sbjct: 44 GVYGKLDSKVRMEWNNRGFSTFHAVLTSVASI-YLLVISDQFDENVHGDAVINSTTRLSESVMGISLGYFLSDLAMIFWHFPALGGIEYVFHHFLSMFAI--ILSVTSGQSQFYIFIVLLSEATTPFVNLRWYLDTSGQKGSKAYTLNGIALFLGWLVARIL---LFIYFFV-----HMYLHFHQVKQVFPLGFYSLLTIPPALAVMNLIWFWKI-------TKGM-------IKTLSKAKTSGMKKQ 266
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|1032285198|gb|OAO99525.1| (hypothetical protein AXX17_AT4G11620 [Arabidopsis thaliana]) HSP 1 Score: 65.4698 bits (158), Expect = 1.416e-8 Identity = 63/234 (26.92%), Postives = 103/234 (44.02%), Query Frame = 0
Query: 91 ATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDLVVELAT-PAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLL-AYTYLAPGNRHLYDGRDGV---FYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKR 319
+ Y +L + R +W+NR + HAV S + Y++V+ F S+ + + M I +GY L DL + P + +FHH + + L S +Y LV L+E +TP ++ W ++ G A+ L +AL + + V RIL+ + YL H + + FY L I A A +N WF+K+ + + KT S VKK+
Sbjct: 44 SVYGKLDSKVRMEWNNRGFSTFHAVFTSVASI-YFLVISDQFDENVHGDSVINSTTRLSESVMGISLGYFLADLAMIFWNFPTLGGIEYVFHHFLSMFAI--ILSVTSGQSQFYIFLVLLSEATTPFVNLRWYLDNSGQKGSKAYTLNGIALFLGWLVARILLFIFFFVHMYL-----HFHQVKQVFPLGFYSLLTIPPALAVMNLLWFWKITKGLIKTLSKAKT---SGVKKQ 266
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|567163510|ref|XP_006397070.1| (hypothetical protein EUTSA_v10028888mg [Eutrema salsugineum] >gi|557098087|gb|ESQ38523.1| hypothetical protein EUTSA_v10028888mg [Eutrema salsugineum]) HSP 1 Score: 64.6994 bits (156), Expect = 2.445e-8 Identity = 62/233 (26.61%), Postives = 104/233 (44.64%), Query Frame = 0
Query: 73 LLCTASFFGSGIVLGKVSATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDL-VVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGV-------FYFQLFIVFAFAGLNYFWFYKL 297
L+C + +G + + + Y +L + R +W+NR + HAV +S + Y +V+ F + + + M I +GY L DL ++ PA+ +FHH + S L S +Y LV L+E +TP ++ W ++T G A+ L +AL + + V RIL L Y ++ H+Y V FY L I + +N WF+K+
Sbjct: 27 LMCKIVYDLTGFISPLLFSVYGKLDNKVRMEWNNRGFSTFHAVFVSVASI-YLLVISDQFDENVHGDLVINSTTRLSEAIMGISLGYFLADLAMIVWQFPALGGVEYVFHHCLSMFSI--ILSVTSGQSQFYIFLVLLSEATTPFVNLRWYLDTSGKKGSKAYTLNGIALFLGWLVARIL---LFIYFFV-----HMYLHFHQVKQVFPLGFYSLLTIAPVLSMMNLLWFWKI 248
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|313226952|emb|CBY22097.1| (unnamed protein product [Oikopleura dioica] >gi|313242731|emb|CBY39515.1| unnamed protein product [Oikopleura dioica]) HSP 1 Score: 64.3142 bits (155), Expect = 5.321e-8 Identity = 44/151 (29.14%), Postives = 73/151 (48.34%), Query Frame = 0
Query: 150 KDTMRIMIGYMLYDLVVELATPAVYDYA-VLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGVFY-FQLFIVFAFAGLNYFWFYKLL 298
K T + +GY L D +V + T + VLFHH + + +L N + GWY+ L+E STP ++ W++ ++GL + +K+ + + +FF+ RI P+ + N + V Y F +F A LN FWF K+
Sbjct: 117 KWTQSMSLGYFLADYIVLVHTRELGGTGPVLFHHTSATAAFLVSLWYNKM--GWYSCFRLLSEFSTPFVNFRWILVSIGLKNTRRYKINGILMTASFFLCRICTCPIYWFYVWKVWNTEAFSSIPNVLYFFWIFGPLALDILNIFWFNKMF 265 The following BLAST results are available for this feature:
BLAST of EWM24954.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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