EWM24954.1, cds5718 (CDS) Nannochloropsis gaditana

Overview
NameEWM24954.1
Unique Namecds5718
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:709031..709364 -
Alignment locationCM002466.1:708228..708801 -
Alignment locationCM002466.1:707999..708089 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24954.1
Productlag1 and cln8 lipid-sensing domain containing protein
Orig transcript idgnl|cribi|Naga_100148g12.7146.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:709031..709364 -
CM002466.1supercontigCM002466.1:708228..708801 -
CM002466.1supercontigCM002466.1:707999..708089 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR006634TLC-dom
Homology
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|585106585|gb|EWM24954.1| (lag1 and cln8 lipid-sensing domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 678.707 bits (1750), Expect = 0.000e+0
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query:    1 MEQFLIYRPGQVFPELTSIPPSSLQEASSSFDNLAADMYQDMLSGLSRFYTVESIDGEALFGIRLPLALAYGLLCTASFFGSGIVLGKVSATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDLVVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGVFYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKRSKPATEGSKSKKA 332
            MEQFLIYRPGQVFPELTSIPPSSLQEASSSFDNLAADMYQDMLSGLSRFYTVESIDGEALFGIRLPLALAYGLLCTASFFGSGIVLGKVSATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDLVVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGVFYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKRSKPATEGSKSKKA
Sbjct:    1 MEQFLIYRPGQVFPELTSIPPSSLQEASSSFDNLAADMYQDMLSGLSRFYTVESIDGEALFGIRLPLALAYGLLCTASFFGSGIVLGKVSATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDLVVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGVFYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKRSKPATEGSKSKKA 332          
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|470528252|ref|XP_004367876.1| (hypothetical protein ACA1_288420 [Acanthamoeba castellanii str. Neff] >gi|440804244|gb|ELR25121.1| hypothetical protein ACA1_288420 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 91.6633 bits (226), Expect = 1.197e-17
Identity = 73/251 (29.08%), Postives = 117/251 (46.61%), Query Frame = 0
Query:   66 PLALAYGLLCTASFFGSGIVLGKVSATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFG---HTFSLLSIAPALDMYEKDTMRIMIGYMLYDLVVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLV-TFFVVRILVSPLLAYTYLAPGNRHLYDGRD------GVFYFQLFIVFAFAGLNYFWFYKLLTLIYRKAR 306
            P   A  ++ TA +  S  +  +VSATYR LP + +  WDNR+VA  HAV++ Y AF   +  +PL     H +S  + A         TM    GY ++D V+ +     +    L H L  + +   +L    +  G++ +     E STP L+  W M+ +G+S+   FK L   LLV +FF+ RI+      Y+ +   + H Y          G+ Y+  F +    GLN +WFY ++    R  +
Sbjct:   21 PYLAASTIIWTAIYLASAPISRRVSATYRGLPFKLKMQWDNRIVAFLHAVVICYAAFWGLLCDEPLKADHLHAYSTWAYA---------TMITACGYFIWDAVMCIIYFKEFQLGFLLHALGCLFTFLGSLDGVFMYYGYFYLTF---EASTPFLNLHWFMDKLGVSNSNPFKKLNAGLLVLSFFLFRIISG--CGYSAVVWQDIHRYIAATSNMANVGIMYYFYFAILLLNGLNCYWFYSIVKFATRAPK 257          
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|1183325575|gb|ORX55343.1| (hypothetical protein BCR36DRAFT_410281 [Piromyces finnis])

HSP 1 Score: 78.5666 bits (192), Expect = 6.277e-13
Identity = 67/239 (28.03%), Postives = 109/239 (45.61%), Query Frame = 0
Query:   93 YRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKD------TMRIMIGYMLYDLVVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGVFYFQLFIVFAF---AGLNYFWFYKLLTLIYRKARGIKTPI--SSPVKKRS 320
            Y +L    R DW++R+VA  HA+I+S     + I L   FG  +         D  +K+      T+ I IGY ++D++  +          + H     L +  T ++N    G Y ++  + E ST  LHT W+ + + L+  +   + +L LLVTFF VRI +  +  +  L   +  ++D      Y  L+ V        LNY WFYK++  I++     K P   S  VKK +
Sbjct:   70 YLKLSNYKRKDWNSRVVAFIHAIIVS----PFCIFLICKFGFPWD----KNENDYSDKEINIFYSTISISIGYFMWDIIYSVGDYKKGGIGFVIHGFGAFLIYIFTFKSN--VLGHYAIMYLIYEFSTIFLHTYWVFDKIDLTGSIGQLISSLLLLVTFFTVRIAIGSIFIFKLL---HDIIFDREVCSVYLSLYFVLNIIPMQTLNYIWFYKMIYSIFKHFEPSKKPNHESKSVKKTN 295          
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|727566137|ref|XP_010455434.1| (PREDICTED: transmembrane protein 56 [Camelina sativa] >gi|1109055821|ref|XP_019090673.1| PREDICTED: transmembrane protein 56 [Camelina sativa])

HSP 1 Score: 66.2402 bits (160), Expect = 6.767e-9
Identity = 65/237 (27.43%), Postives = 106/237 (44.73%), Query Frame = 0
Query:   91 ATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDL-VVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGV-------FYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKR 319
              Y +L  + R +W+NR  +  HAV+ S  +  Y +V+   F       ++  +     +  M I +GY L DL ++    PA+     +FHH   + +    L      S +Y  +V L+E +TP ++  W ++T G     A+ L  +AL + + V RIL   L  Y ++     H+Y     V       FY  L I  A A +N  WF+K+   + +     KT   S VKK+
Sbjct:   44 GVYGKLDSKVRMEWNNRGFSTFHAVLTSVASI-YLLVISEQFDENVHGDAVINSTTKLSESVMGISLGYFLSDLAMIFWHFPALGGIEYVFHHFLSMFAI--ILSVTSGQSQFYIFIVLLSEATTPFVNLRWYLDTSGQKGSKAYTLNGIALFLGWLVARIL---LFIYFFV-----HMYLHFHQVKQVFPLGFYSLLTIPPALAVMNLIWFWKITKGMIKTLSKAKT---SAVKKQ 266          
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|727491827|ref|XP_010421956.1| (PREDICTED: transmembrane protein 56 [Camelina sativa] >gi|1109153703|ref|XP_019084055.1| PREDICTED: transmembrane protein 56 [Camelina sativa])

HSP 1 Score: 66.2402 bits (160), Expect = 7.447e-9
Identity = 65/237 (27.43%), Postives = 106/237 (44.73%), Query Frame = 0
Query:   91 ATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDL-VVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGV-------FYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKR 319
              Y +L  + R +W+NR  +  HAV+ S  +  Y +V+   F       ++  +     +  M I +GY L DL ++    PA+     +FHH   + +    L      S +Y  +V L+E +TP ++  W ++T G     A+ L  +AL + + V RIL   L  Y ++     H+Y     V       FY  L I  A A +N  WF+K+   + +     KT   S VKK+
Sbjct:   45 GVYGKLDSKVRMEWNNRGFSTFHAVLTSVASI-YLLVISDQFDENVHGDAVINSTTKLSESVMGISLGYFLSDLAMIFWHFPALGGIEYVFHHFLSMFAI--ILSVTSGQSQFYIFIVLLSEATTPFVNLRWYLDTSGQKGSKAYTLNGIALFLGWLVARIL---LFIYFFV-----HMYLHFHQVKQVFPLGFYSLLTIPPALAVMNLIWFWKITKGMIKTLSKAKT---SAVKKQ 267          
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|727421600|ref|XP_010437167.1| (PREDICTED: transmembrane protein 56-like [Camelina sativa])

HSP 1 Score: 66.2402 bits (160), Expect = 8.026e-9
Identity = 65/237 (27.43%), Postives = 106/237 (44.73%), Query Frame = 0
Query:   91 ATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDL-VVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGV-------FYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKR 319
              Y +L  + R +W+NR  +  HAV+ S  +  Y +V+   F       ++  +     +  M I +GY L DL ++    PA+     +FHH   + +    L      S +Y  +V L+E +TP ++  W ++T G     A+ L  +AL + + V RIL   L  Y ++     H+Y     V       FY  L I  A A +N  WF+K+   + +     KT   S VKK+
Sbjct:   44 GVYGKLDSKVRMEWNNRGFSTFHAVLTSVASI-YLLVISDQFDENVHGDAVINSTTKLSESVMGISLGYFLSDLAMIFWHFPALGGIEYVFHHFLSMFAI--ILSVTSGQSQFYIFIVLLSEATTPFVNLRWYLDTSGQKGSKAYTLNGIALFLGWLVARIL---LFIYFFV-----HMYLHFHQVKQVFPLGFYSLLTIPPALAVMNLIWFWKITKGMIKTLSKAKT---SAVKKQ 266          
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|565460942|ref|XP_006288470.1| (hypothetical protein CARUB_v10001728mg [Capsella rubella] >gi|482557176|gb|EOA21368.1| hypothetical protein CARUB_v10001728mg [Capsella rubella])

HSP 1 Score: 65.4698 bits (158), Expect = 1.326e-8
Identity = 66/248 (26.61%), Postives = 108/248 (43.55%), Query Frame = 0
Query:   91 ATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDL-VVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGV-------FYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKRSKPATEGSKSK 330
              Y +L  + R +W+NR  +  HAV+ S  +  Y +V+   F       ++  +     +  M I +GY L DL ++    PA+     +FHH   + +    L      S +Y  +V L+E +TP ++  W ++T G     A+ L  +AL + + V RIL   L  Y ++     H+Y     V       FY  L I  A A +N  WF+K+        +G+       +K  SK  T G K +
Sbjct:   44 GVYGKLDSKVRMEWNNRGFSTFHAVLTSVASI-YLLVISDQFDENVHGDAVINSTTRLSESVMGISLGYFLSDLAMIFWHFPALGGIEYVFHHFLSMFAI--ILSVTSGQSQFYIFIVLLSEATTPFVNLRWYLDTSGQKGSKAYTLNGIALFLGWLVARIL---LFIYFFV-----HMYLHFHQVKQVFPLGFYSLLTIPPALAVMNLIWFWKI-------TKGM-------IKTLSKAKTSGMKKQ 266          
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|1032285198|gb|OAO99525.1| (hypothetical protein AXX17_AT4G11620 [Arabidopsis thaliana])

HSP 1 Score: 65.4698 bits (158), Expect = 1.416e-8
Identity = 63/234 (26.92%), Postives = 103/234 (44.02%), Query Frame = 0
Query:   91 ATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDLVVELAT-PAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLL-AYTYLAPGNRHLYDGRDGV---FYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKR 319
            + Y +L  + R +W+NR  +  HAV  S  +  Y++V+   F       S+  +     +  M I +GY L DL +     P +     +FHH   + +    L      S +Y  LV L+E +TP ++  W ++  G     A+ L  +AL + + V RIL+      + YL     H +  +      FY  L I  A A +N  WF+K+   + +     KT   S VKK+
Sbjct:   44 SVYGKLDSKVRMEWNNRGFSTFHAVFTSVASI-YFLVISDQFDENVHGDSVINSTTRLSESVMGISLGYFLADLAMIFWNFPTLGGIEYVFHHFLSMFAI--ILSVTSGQSQFYIFLVLLSEATTPFVNLRWYLDNSGQKGSKAYTLNGIALFLGWLVARILLFIFFFVHMYL-----HFHQVKQVFPLGFYSLLTIPPALAVMNLLWFWKITKGLIKTLSKAKT---SGVKKQ 266          
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|567163510|ref|XP_006397070.1| (hypothetical protein EUTSA_v10028888mg [Eutrema salsugineum] >gi|557098087|gb|ESQ38523.1| hypothetical protein EUTSA_v10028888mg [Eutrema salsugineum])

HSP 1 Score: 64.6994 bits (156), Expect = 2.445e-8
Identity = 62/233 (26.61%), Postives = 104/233 (44.64%), Query Frame = 0
Query:   73 LLCTASFFGSGIVLGKVSATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDL-VVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGV-------FYFQLFIVFAFAGLNYFWFYKL 297
            L+C   +  +G +   + + Y +L  + R +W+NR  +  HAV +S  +  Y +V+   F        +  +     +  M I +GY L DL ++    PA+     +FHH   + S    L      S +Y  LV L+E +TP ++  W ++T G     A+ L  +AL + + V RIL   L  Y ++     H+Y     V       FY  L I    + +N  WF+K+
Sbjct:   27 LMCKIVYDLTGFISPLLFSVYGKLDNKVRMEWNNRGFSTFHAVFVSVASI-YLLVISDQFDENVHGDLVINSTTRLSEAIMGISLGYFLADLAMIVWQFPALGGVEYVFHHCLSMFSI--ILSVTSGQSQFYIFLVLLSEATTPFVNLRWYLDTSGKKGSKAYTLNGIALFLGWLVARIL---LFIYFFV-----HMYLHFHQVKQVFPLGFYSLLTIAPVLSMMNLLWFWKI 248          
BLAST of EWM24954.1 vs. NCBI_GenBank
Match: gi|313226952|emb|CBY22097.1| (unnamed protein product [Oikopleura dioica] >gi|313242731|emb|CBY39515.1| unnamed protein product [Oikopleura dioica])

HSP 1 Score: 64.3142 bits (155), Expect = 5.321e-8
Identity = 44/151 (29.14%), Postives = 73/151 (48.34%), Query Frame = 0
Query:  150 KDTMRIMIGYMLYDLVVELATPAVYDYA-VLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGVFY-FQLFIVFAFAGLNYFWFYKLL 298
            K T  + +GY L D +V + T  +     VLFHH +   +   +L  N +  GWY+    L+E STP ++  W++ ++GL +   +K+  + +  +FF+ RI   P+  +      N   +     V Y F +F   A   LN FWF K+ 
Sbjct:  117 KWTQSMSLGYFLADYIVLVHTRELGGTGPVLFHHTSATAAFLVSLWYNKM--GWYSCFRLLSEFSTPFVNFRWILVSIGLKNTRRYKINGILMTASFFLCRICTCPIYWFYVWKVWNTEAFSSIPNVLYFFWIFGPLALDILNIFWFNKMF 265          
The following BLAST results are available for this feature:
BLAST of EWM24954.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106585|gb|EWM24954.1|0.000e+0100.00lag1 and cln8 lipid-sensing domain containing prot... [more]
gi|470528252|ref|XP_004367876.1|1.197e-1729.08hypothetical protein ACA1_288420 [Acanthamoeba cas... [more]
gi|1183325575|gb|ORX55343.1|6.277e-1328.03hypothetical protein BCR36DRAFT_410281 [Piromyces ... [more]
gi|727566137|ref|XP_010455434.1|6.767e-927.43PREDICTED: transmembrane protein 56 [Camelina sati... [more]
gi|727491827|ref|XP_010421956.1|7.447e-927.43PREDICTED: transmembrane protein 56 [Camelina sati... [more]
gi|727421600|ref|XP_010437167.1|8.026e-927.43PREDICTED: transmembrane protein 56-like [Camelina... [more]
gi|565460942|ref|XP_006288470.1|1.326e-826.61hypothetical protein CARUB_v10001728mg [Capsella r... [more]
gi|1032285198|gb|OAO99525.1|1.416e-826.92hypothetical protein AXX17_AT4G11620 [Arabidopsis ... [more]
gi|567163510|ref|XP_006397070.1|2.445e-826.61hypothetical protein EUTSA_v10028888mg [Eutrema sa... [more]
gi|313226952|emb|CBY22097.1|5.321e-829.14unnamed protein product [Oikopleura dioica] >gi|31... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5733rna5733Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications