EWM24956.1, cds5711 (CDS) Nannochloropsis gaditana

Overview
NameEWM24956.1
Unique Namecds5711
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:684408..684986 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24956.1
ProductUbiquitin-conjugating enzyme/RWD
Orig transcript idgnl|cribi|Naga_100148g4.7148.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:684408..684986 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR014806Ufc1
Homology
BLAST of EWM24956.1 vs. NCBI_GenBank
Match: gi|585106587|gb|EWM24956.1| (Ubiquitin-conjugating enzyme/RWD [Nannochloropsis gaditana])

HSP 1 Score: 398.667 bits (1023), Expect = 1.392e-140
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
Query:    1 MDGGPGGKAGRAEAPASEPMPPVWASTDHAPHVLEEIPMLHTRAGPRDGNQWISRVKEEMQAVIALVRINKEKDNDWFQINPVNKLCTRWEGKCWTYHQGVRFEFTIHFDVPASYPATCPDLIIPHLDGKTAKIYRGGRICLDLHFQPLWARNVPKFGIAHALALGLGPWLSLEIPSLVSAGLLPVTGTTAR 192
            MDGGPGGKAGRAEAPASEPMPPVWASTDHAPHVLEEIPMLHTRAGPRDGNQWISRVKEEMQAVIALVRINKEKDNDWFQINPVNKLCTRWEGKCWTYHQGVRFEFTIHFDVPASYPATCPDLIIPHLDGKTAKIYRGGRICLDLHFQPLWARNVPKFGIAHALALGLGPWLSLEIPSLVSAGLLPVTGTTAR
Sbjct:    1 MDGGPGGKAGRAEAPASEPMPPVWASTDHAPHVLEEIPMLHTRAGPRDGNQWISRVKEEMQAVIALVRINKEKDNDWFQINPVNKLCTRWEGKCWTYHQGVRFEFTIHFDVPASYPATCPDLIIPHLDGKTAKIYRGGRICLDLHFQPLWARNVPKFGIAHALALGLGPWLSLEIPSLVSAGLLPVTGTTAR 192          
BLAST of EWM24956.1 vs. NCBI_GenBank
Match: gi|971514270|dbj|GAQ83932.1| (Ubiquitin-fold modifier-conjugating enzyme [Klebsormidium nitens])

HSP 1 Score: 212.616 bits (540), Expect = 2.355e-67
Identity = 91/160 (56.88%), Postives = 124/160 (77.50%), Query Frame = 0
Query:   33 VLEEIPMLHTRAGPRDGNQWISRVKEEMQAVIALVRINKEKDNDWFQINPVNKLCTRWEGKCWTYHQGVRFEFTIHFDVPASYPATCPDLIIPHLDGKTAKIYRGGRICLDLHFQPLWARNVPKFGIAHALALGLGPWLSLEIPSLVSAGLLPVTGTTAR 192
            V+++IP+L  +AGPRDG  W  R+KEE QA+IA +++NK  DNDWF+I+  N   T+W+GKCW  H  +++EF + FD+PA+YPAT P+L +P LDGKTAK+YRGG+ICL +HF+PLWA+NVP FG+AHAL LG+GPWL+ EIP LV  G++     TA+
Sbjct:   11 VVQKIPLLTVKAGPRDGEDWKKRLKEEYQALIAYMQMNKANDNDWFRISAANPEGTKWKGKCWYIHNLLKYEFDLQFDIPATYPATAPELELPELDGKTAKMYRGGKICLTIHFKPLWAKNVPHFGVAHALCLGMGPWLAAEIPHLVETGMIQHKDNTAK 170          
BLAST of EWM24956.1 vs. NCBI_GenBank
Match: gi|908503922|ref|XP_013063301.1| (PREDICTED: ubiquitin-fold modifier-conjugating enzyme 1 [Biomphalaria glabrata])

HSP 1 Score: 210.69 bits (535), Expect = 1.326e-66
Identity = 93/157 (59.24%), Postives = 123/157 (78.34%), Query Frame = 0
Query:   33 VLEEIPMLHTRAGPRDGNQWISRVKEEMQAVIALVRINKEKDNDWFQINPVNKLCTRWEGKCWTYHQGVRFEFTIHFDVPASYPATCPDLIIPHLDGKTAKIYRGGRICLDLHFQPLWARNVPKFGIAHALALGLGPWLSLEIPSLVSAGLLPVTGT 189
             L +IP+L T+AGPRDG+ WI R+KEE QA+I  V+ NKE DNDWF++   NK  TRW GKCW  H+ +++EF + FD+P +YP T P++ +P LDGKTAK+YRGG+ICL  HF+PLWARNVP+FGIAHA+ALGLGPWL++EIP L+  G++   G+
Sbjct:    9 TLAKIPLLKTKAGPRDGDLWIPRLKEEYQALIQYVQNNKESDNDWFRLES-NKEGTRWFGKCWYIHELLKYEFDVEFDIPVTYPTTSPEIALPELDGKTAKMYRGGKICLTDHFKPLWARNVPRFGIAHAMALGLGPWLAVEIPDLIQRGVVTHKGS 164          
BLAST of EWM24956.1 vs. NCBI_GenBank
Match: gi|695393962|ref|XP_009520752.1| (hypothetical protein PHYSODRAFT_285084 [Phytophthora sojae] >gi|348685649|gb|EGZ25464.1| hypothetical protein PHYSODRAFT_285084 [Phytophthora sojae])

HSP 1 Score: 210.305 bits (534), Expect = 1.651e-66
Identity = 90/157 (57.32%), Postives = 120/157 (76.43%), Query Frame = 0
Query:   28 DHAPHVLEEIPMLHTRAGPRDGNQWISRVKEEMQAVIALVRINKEKDNDWFQINPVNKLCTRWEGKCWTYHQGVRFEFTIHFDVPASYPATCPDLIIPHLDGKTAKIYRGGRICLDLHFQPLWARNVPKFGIAHALALGLGPWLSLEIPSLVSAGLL 184
            +     +++IP+L TRAGPRDG QW  R+KEE  A+I  V++NKE DNDWF I   NK  TRW GKCW++H G+R+EF + F++PA+YP   P+L IP L+GKT+K+YRGG+ICL +HF PLW +NVP+FG+AHALALGL PWL+ E+P LV  G++
Sbjct:    7 ESTKRTVQKIPLLTTRAGPRDGEQWTKRLKEEYLALIQYVKMNKEADNDWFTIES-NKAGTRWTGKCWSFHNGLRYEFDLEFEIPATYPVANPELCIPELEGKTSKMYRGGKICLTIHFAPLWQKNVPRFGVAHALALGLAPWLAAEVPDLVERGVI 162          
BLAST of EWM24956.1 vs. NCBI_GenBank
Match: gi|815792277|ref|XP_012216726.1| (PREDICTED: ubiquitin-fold modifier-conjugating enzyme 1 [Linepithema humile])

HSP 1 Score: 209.92 bits (533), Expect = 2.729e-66
Identity = 92/157 (58.60%), Postives = 119/157 (75.80%), Query Frame = 0
Query:   28 DHAPHVLEEIPMLHTRAGPRDGNQWISRVKEEMQAVIALVRINKEKDNDWFQINPVNKLCTRWEGKCWTYHQGVRFEFTIHFDVPASYPATCPDLIIPHLDGKTAKIYRGGRICLDLHFQPLWARNVPKFGIAHALALGLGPWLSLEIPSLVSAGLL 184
            +     L  IP+L T+AGPRD + W+ R+KEE QA+I  V+ NKE DNDWF++   NK  TRW GKCW  H  +++EF I FD+P +YP T P++ +P LDGKTAK+YRGG+ICL  HF+PLWARNVPKFGIAHA+ALGLGPWL++EIP L+  G++
Sbjct:    4 ESTKKTLSNIPLLQTKAGPRDKDLWVQRLKEEYQALIKYVKNNKEADNDWFRLES-NKEGTRWFGKCWYIHNFLKYEFGIEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAMALGLGPWLAVEIPELIEKGIV 159          
BLAST of EWM24956.1 vs. NCBI_GenBank
Match: gi|524915815|ref|XP_005112697.1| (PREDICTED: ubiquitin-fold modifier-conjugating enzyme 1 [Aplysia californica])

HSP 1 Score: 209.534 bits (532), Expect = 4.045e-66
Identity = 92/152 (60.53%), Postives = 120/152 (78.95%), Query Frame = 0
Query:   33 VLEEIPMLHTRAGPRDGNQWISRVKEEMQAVIALVRINKEKDNDWFQINPVNKLCTRWEGKCWTYHQGVRFEFTIHFDVPASYPATCPDLIIPHLDGKTAKIYRGGRICLDLHFQPLWARNVPKFGIAHALALGLGPWLSLEIPSLVSAGLL 184
             L +IP+L T+AGPRDG  WI R+KEE QA+I  V+ NKE DNDWF++   NK  TRW GKCW  H+ +++EF + FD+P +YP T P++ +P LDGKTAK+YRGG+ICL  HF+PLWARNVP+FGIAHA+ALGLGPWL++EIP L+  G++
Sbjct:    9 TLAKIPLLKTKAGPRDGELWIPRLKEEYQALIQYVQNNKESDNDWFRLES-NKEGTRWFGKCWYIHELLKYEFDVEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWARNVPRFGIAHAMALGLGPWLAVEIPDLIQRGVV 159          
BLAST of EWM24956.1 vs. NCBI_GenBank
Match: gi|953486237|emb|CEG49568.1| (ubiquitin-fold modifier-conjugating enzyme 1 [Plasmopara halstedii])

HSP 1 Score: 209.149 bits (531), Expect = 4.417e-66
Identity = 90/157 (57.32%), Postives = 121/157 (77.07%), Query Frame = 0
Query:   28 DHAPHVLEEIPMLHTRAGPRDGNQWISRVKEEMQAVIALVRINKEKDNDWFQINPVNKLCTRWEGKCWTYHQGVRFEFTIHFDVPASYPATCPDLIIPHLDGKTAKIYRGGRICLDLHFQPLWARNVPKFGIAHALALGLGPWLSLEIPSLVSAGLL 184
            ++    +++IP+L TRAGPRDG  W  R+KEE  A+I  V++NKE DNDWF I   NK  TRW GKCW++H G+R+EF + F++PA+YPA  P+L IP L+GKT+K+YRGG+ICL +HF PLW +NVP+FG+AHALALGL PWL+ E+P LV  G++
Sbjct:    7 ENTKRAVQKIPLLTTRAGPRDGEAWTKRLKEEYLALIQYVKMNKEADNDWFIIES-NKSGTRWTGKCWSFHNGLRYEFDLEFEIPATYPAANPELCIPELEGKTSKMYRGGKICLTIHFAPLWQKNVPRFGVAHALALGLAPWLAAEVPDLVERGVI 162          
BLAST of EWM24956.1 vs. NCBI_GenBank
Match: gi|697188619|ref|XP_009603351.1| (PREDICTED: ubiquitin-fold modifier-conjugating enzyme 1 [Nicotiana tomentosiformis] >gi|698518992|ref|XP_009804360.1| PREDICTED: ubiquitin-fold modifier-conjugating enzyme 1 [Nicotiana sylvestris] >gi|1025238877|ref|XP_016486079.1| PREDICTED: ubiquitin-fold modifier-conjugating enzyme 1 [Nicotiana tabacum] >gi|1025253644|ref|XP_016485266.1| PREDICTED: ubiquitin-fold modifier-conjugating enzyme 1 [Nicotiana tabacum] >gi|1111137617|ref|XP_019254365.1| PREDICTED: ubiquitin-fold modifier-conjugating enzyme 1 [Nicotiana attenuata] >gi|1102141280|gb|OIS97681.1| ubiquitin-fold modifier-conjugating enzyme 1 [Nicotiana attenuata])

HSP 1 Score: 209.149 bits (531), Expect = 5.553e-66
Identity = 90/152 (59.21%), Postives = 118/152 (77.63%), Query Frame = 0
Query:   33 VLEEIPMLHTRAGPRDGNQWISRVKEEMQAVIALVRINKEKDNDWFQINPVNKLCTRWEGKCWTYHQGVRFEFTIHFDVPASYPATCPDLIIPHLDGKTAKIYRGGRICLDLHFQPLWARNVPKFGIAHALALGLGPWLSLEIPSLVSAGLL 184
             L +IP+L T+AGPRDG  W SR+KEE +A+IA   +NK KDNDWF+I+  N   TRW+GKCW  H  +++EF + FD+P +YPAT P+L +P LDGKT K+YRGG+ICL +HF+PLWA+N P+FGIAHAL LGL PWL+ EIP LV +G++
Sbjct:   11 TLTQIPLLTTKAGPRDGAAWTSRLKEEYKALIAYTSMNKSKDNDWFRISAANPEGTRWKGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPELDGKTEKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMI 162          
BLAST of EWM24956.1 vs. NCBI_GenBank
Match: gi|805804639|ref|XP_012145555.1| (PREDICTED: ubiquitin-fold modifier-conjugating enzyme 1 isoform X2 [Megachile rotundata])

HSP 1 Score: 209.149 bits (531), Expect = 5.927e-66
Identity = 91/159 (57.23%), Postives = 119/159 (74.84%), Query Frame = 0
Query:   26 STDHAPHVLEEIPMLHTRAGPRDGNQWISRVKEEMQAVIALVRINKEKDNDWFQINPVNKLCTRWEGKCWTYHQGVRFEFTIHFDVPASYPATCPDLIIPHLDGKTAKIYRGGRICLDLHFQPLWARNVPKFGIAHALALGLGPWLSLEIPSLVSAGLL 184
            + +     L  IP+L T+AGPRD   W+ R+KEE QA+I  V+ NK+ DNDWF++   NK  TRW GKCW  H  +++EF I FD+P +YP T P++ +P LDGKTAK+YRGG+ICL  HF+PLWARNVPKFGIAHA+ALGLGPWL++EIP L+  G++
Sbjct:    8 ANESTKKTLSNIPLLQTKAGPRDKELWVQRLKEEYQALIKYVKNNKDSDNDWFRLES-NKEGTRWFGKCWYIHNLLKYEFEIEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAMALGLGPWLAVEIPDLIEKGVI 165          
BLAST of EWM24956.1 vs. NCBI_GenBank
Match: gi|919030788|ref|XP_013399051.1| (PREDICTED: ubiquitin-fold modifier-conjugating enzyme 1 [Lingula anatina] >gi|919068135|ref|XP_013415576.1| PREDICTED: ubiquitin-fold modifier-conjugating enzyme 1 [Lingula anatina])

HSP 1 Score: 208.764 bits (530), Expect = 6.619e-66
Identity = 94/152 (61.84%), Postives = 117/152 (76.97%), Query Frame = 0
Query:   33 VLEEIPMLHTRAGPRDGNQWISRVKEEMQAVIALVRINKEKDNDWFQINPVNKLCTRWEGKCWTYHQGVRFEFTIHFDVPASYPATCPDLIIPHLDGKTAKIYRGGRICLDLHFQPLWARNVPKFGIAHALALGLGPWLSLEIPSLVSAGLL 184
             L +IP+L T+AGPRDG+ W  R+KEE QA+IA V+ NKE DNDWF++   NK  TRW GKCW  H  +++EF + FD+P  YP T P++ IP LDGKTAK+YRGG+ICL  HF+PLWARNVPKFGIA A ALGLGPWL++EIP L+  GL+
Sbjct:    9 TLGQIPLLKTKAGPRDGDLWAQRLKEEYQALIAYVQKNKEADNDWFRLES-NKEGTRWFGKCWYIHNLLKYEFDVEFDIPVMYPTTAPEIAIPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAQAFALGLGPWLAVEIPDLIEKGLV 159          
The following BLAST results are available for this feature:
BLAST of EWM24956.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106587|gb|EWM24956.1|1.392e-140100.00Ubiquitin-conjugating enzyme/RWD [Nannochloropsis ... [more]
gi|971514270|dbj|GAQ83932.1|2.355e-6756.88Ubiquitin-fold modifier-conjugating enzyme [Klebso... [more]
gi|908503922|ref|XP_013063301.1|1.326e-6659.24PREDICTED: ubiquitin-fold modifier-conjugating enz... [more]
gi|695393962|ref|XP_009520752.1|1.651e-6657.32hypothetical protein PHYSODRAFT_285084 [Phytophtho... [more]
gi|815792277|ref|XP_012216726.1|2.729e-6658.60PREDICTED: ubiquitin-fold modifier-conjugating enz... [more]
gi|524915815|ref|XP_005112697.1|4.045e-6660.53PREDICTED: ubiquitin-fold modifier-conjugating enz... [more]
gi|953486237|emb|CEG49568.1|4.417e-6657.32ubiquitin-fold modifier-conjugating enzyme 1 [Plas... [more]
gi|697188619|ref|XP_009603351.1|5.553e-6659.21PREDICTED: ubiquitin-fold modifier-conjugating enz... [more]
gi|805804639|ref|XP_012145555.1|5.927e-6657.23PREDICTED: ubiquitin-fold modifier-conjugating enz... [more]
gi|919030788|ref|XP_013399051.1|6.619e-6661.84PREDICTED: ubiquitin-fold modifier-conjugating enz... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5726rna5726Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications