EWM24968.1, cds5701 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|553180642|ref|XP_005853437.1| (transport protein particle bet3 containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295624|gb|EKU22923.1| transport protein particle bet3 containing protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 403.675 bits (1036), Expect = 2.396e-142 Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
Query: 1 MAADLLKKPSSTSSQHQNKKVECADSLFDYLFAAMIDTLRTGGDQGPRKEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTANDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIRRSGSGSSSSASLSAR 196
MAADLLKKPSSTSSQHQNKKVECADSLFDYLFAAMIDTLRTGGDQGPRKEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTANDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIRRSGSGSSSSASLSAR
Sbjct: 8 MAADLLKKPSSTSSQHQNKKVECADSLFDYLFAAMIDTLRTGGDQGPRKEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTANDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIRRSGSGSSSSASLSAR 203
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|585106600|gb|EWM24968.1| (transport protein particle bet3 containing protein [Nannochloropsis gaditana]) HSP 1 Score: 402.905 bits (1034), Expect = 3.409e-142 Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
Query: 1 MAADLLKKPSSTSSQHQNKKVECADSLFDYLFAAMIDTLRTGGDQGPRKEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTANDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIRRSGSGSSSSASLSAR 196
MAADLLKKPSSTSSQHQNKKVECADSLFDYLFAAMIDTLRTGGDQGPRKEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTANDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIRRSGSGSSSSASLSAR
Sbjct: 1 MAADLLKKPSSTSSQHQNKKVECADSLFDYLFAAMIDTLRTGGDQGPRKEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTANDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIRRSGSGSSSSASLSAR 196
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|676398289|ref|XP_009042422.1| (hypothetical protein AURANDRAFT_59697 [Aureococcus anophagefferens] >gi|323446866|gb|EGB02881.1| hypothetical protein AURANDRAFT_59697 [Aureococcus anophagefferens]) HSP 1 Score: 152.14 bits (383), Expect = 1.228e-43 Identity = 75/137 (54.74%), Postives = 99/137 (72.26%), Query Frame = 0
Query: 46 GPRKEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTAND-ESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIR 181
GP+ E + G++VGYR E IAQ R LAA+ LEV +KFICK+ W EIF KQIDKLQTN++GVFVL+D FRWLA +++D E+ +R A +L FPCG+++GAL NLGI +TV AE +PSCSF+I+I+
Sbjct: 19 GPQPGETASSRPELHGYEVGYRFVERIAQARALAADHLEV--IKFICKDVWNEIFGKQIDKLQTNHRGVFVLKDYTFRWLARVSSDDAEAMKRVTANILQFPCGVLRGALANLGIVATVTAEYG-TLPSCSFSIRIQ 152
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|635366924|emb|CCI44812.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 149.828 bits (377), Expect = 4.069e-43 Identity = 74/134 (55.22%), Postives = 98/134 (73.13%), Query Frame = 0
Query: 49 KEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTAN-DESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIR 181
+E+ L + + +GFDVGYR AE A+ R ++ ++V+KFICKEFWI +FKKQIDKLQTN++GVFVL+D FRWL+ F+A+ DESTR A L FPCG I+GAL NLGI + V A+V ++P C F IKI+
Sbjct: 2 REDFLKK-LEGLGFDVGYRFAERYAKDR--PRMTMPLDVIKFICKEFWISVFKKQIDKLQTNHRGVFVLQDFSFRWLSSFSASADESTREMALVYLVFPCGFIRGALTNLGITAIVNADVT-SLPGCLFNIKIK 131
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|676392503|ref|XP_009039529.1| (hypothetical protein AURANDRAFT_7703, partial [Aureococcus anophagefferens] >gi|323449804|gb|EGB05689.1| hypothetical protein AURANDRAFT_7703, partial [Aureococcus anophagefferens]) HSP 1 Score: 148.288 bits (373), Expect = 1.630e-42 Identity = 71/122 (58.20%), Postives = 93/122 (76.23%), Query Frame = 0
Query: 61 GFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTAND-ESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIR 181
G++VGYR E IAQ R LAA+ LE +KFICK+ W EIF KQIDKLQTN++GVFVL+D FRWLA +++D E+ +R A +L FPCG+++GAL NLGI +TV AE +PSCSF+I+I+
Sbjct: 12 GYEVGYRFVERIAQARALAADHLEA--IKFICKDVWNEIFGKQIDKLQTNHRGVFVLKDYTFRWLARVSSDDAEAMKRVTANILQFPCGVLRGALANLGIVATVTAEYG-TLPSCSFSIRIQ 130
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|635366923|emb|CCI44811.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 149.058 bits (375), Expect = 2.865e-42 Identity = 74/134 (55.22%), Postives = 98/134 (73.13%), Query Frame = 0
Query: 49 KEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTAN-DESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIR 181
+E+ L + + +GFDVGYR AE A+ R ++ ++V+KFICKEFWI +FKKQIDKLQTN++GVFVL+D FRWL+ F+A+ DESTR A L FPCG I+GAL NLGI + V A+V ++P C F IKI+
Sbjct: 47 REDFL-KKLEGLGFDVGYRFAERYAKDR--PRMTMPLDVIKFICKEFWISVFKKQIDKLQTNHRGVFVLQDFSFRWLSSFSASADESTREMALVYLVFPCGFIRGALTNLGITAIVNADVT-SLPGCLFNIKIK 176
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|673018736|ref|XP_008863329.1| (hypothetical protein H310_01802 [Aphanomyces invadans] >gi|574480243|gb|ETW07236.1| hypothetical protein H310_01802 [Aphanomyces invadans]) HSP 1 Score: 142.895 bits (359), Expect = 7.031e-40 Identity = 80/177 (45.20%), Postives = 112/177 (63.28%), Query Frame = 0
Query: 15 QHQNKKVECADSLFDYLFA----AMIDTLRTGGDQGPRK-----EELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTA-NDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIR 181
Q Q+ E A+S F L+A +M++ T ++ P +EL A+ + A G+DVGYR E ++ R E L +V+KF+CK+FWI IFKKQIDKLQTN++GVFVL+D FRW+ + ND +++ A L FPCGL++GAL NLGI + V A++ AVP C F IK+R
Sbjct: 3 QGQSGPHEVAESCFLQLYAEAVRSMVERHPTSAEKSPEDVWTPSDELTAK-LEAFGYDVGYRFVERFSRDRPRMLEPL--DVIKFLCKDFWIHIFKKQIDKLQTNHRGVFVLQDFNFRWIQALSGENDAESKQKALVFLIFPCGLLRGALANLGILAIVNADLN-AVPGCVFNIKLR 175
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|953494614|emb|CEG44208.1| (Transport protein particle (TRAPP) complex subunit [Plasmopara halstedii]) HSP 1 Score: 142.51 bits (358), Expect = 1.322e-39 Identity = 79/177 (44.63%), Postives = 108/177 (61.02%), Query Frame = 0
Query: 22 ECADSLFDYLFAAMIDTL-------RTGGDQGPRKEELLAE------TVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFT-ANDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEV--APAVPSCSFTIKIRR 182
E AD F L+ ++ ++ + P EE A + A+G+DVG R AE IA+ R ESL +V+KF+CK+FWI IFKKQIDKLQTN++GVFV++D FRWLA + A DE TR A L FPCG+I+GAL NLG+ + V A++ A+P C F IK+++
Sbjct: 3 EVADGCFQQLYGEIVRSMLEYQPSQTKDTNATPTVEEEAAHREAFIIKLEAMGYDVGSRFAERIARDRPRMVESL--DVIKFVCKDFWIAIFKKQIDKLQTNHRGVFVVQDFHFRWLAGISAATDEETREKALVFLVFPCGIIRGALANLGLTAIVNADIPDVHALPGCLFNIKLKQ 177
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|1173926886|gb|OQR81006.1| (trafficking protein particle complex subunit 6B [Achlya hypogyna]) HSP 1 Score: 139.813 bits (351), Expect = 9.417e-39 Identity = 71/161 (44.10%), Postives = 103/161 (63.98%), Query Frame = 0
Query: 22 ECADSLFDYLFAAMIDTLRTGGDQGPRKEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTA-NDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIR 181
E A++ F +L+ ++ G +L A+ + A G+DVGYR E ++ R E L++ +KFICK+FWI +FKKQIDKLQTN++GVFVL+D FRW+ +A D +++ A L FPCG+++GAL NLG+ + V A++ AVP C F IKIR
Sbjct: 4 EVAETSFLHLYGEAVERHEAATGSGVLDNDLTAK-LEAFGYDVGYRFVERFSRDRARLVEPLDI--IKFICKDFWIHVFKKQIDKLQTNHRGVFVLQDFNFRWIHALSAETDAESKQKALIFLVFPCGVLRGALANLGLLAIVNADL-NAVPGCVFNIKIR 160
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|698817104|ref|XP_009841581.1| (hypothetical protein H257_15251 [Aphanomyces astaci] >gi|574103362|gb|ETV68904.1| hypothetical protein H257_15251 [Aphanomyces astaci]) HSP 1 Score: 139.813 bits (351), Expect = 1.280e-38 Identity = 76/176 (43.18%), Postives = 108/176 (61.36%), Query Frame = 0
Query: 15 QHQNKKVECADSLFDYLFA----AMIDTLRTGGDQGPRK----EELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTA-NDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIR 181
Q Q E A+S F L+A +M++ + ++ P + L + A G+DVGYR E ++ R E L +V+KF+CK+FWI IFKKQIDKLQTN++GVFVL+D FRW+ + +D +++ A L FPCGL++GAL NLGI + V A++ AVP C F IK+R
Sbjct: 2 QQQQAPHEVAESCFLQLYAEAVRSMVERHPSTAEKAPEDAWAPSDDLTAKLEAFGYDVGYRFVERFSRDRPRLLEPL--DVIKFLCKDFWIHIFKKQIDKLQTNHRGVFVLQDFNFRWIQALSGEHDAESKQKALVFLVFPCGLLRGALANLGILAIVNADLN-AVPGCVFNIKLR 174 The following BLAST results are available for this feature:
BLAST of EWM24968.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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