EWM24968.1, cds5701 (CDS) Nannochloropsis gaditana

Overview
NameEWM24968.1
Unique Namecds5701
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:659257..659847 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24968.1
Producttransport protein particle bet3 containing protein
Orig transcript idgnl|cribi|Naga_100186g7.5607.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:659257..659847 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0065009regulation of molecular function
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR024096NO_sig/Golgi_transp_ligand-bd
IPR007194TRAPP_component
Homology
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|553180642|ref|XP_005853437.1| (transport protein particle bet3 containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295624|gb|EKU22923.1| transport protein particle bet3 containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 403.675 bits (1036), Expect = 2.396e-142
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
Query:    1 MAADLLKKPSSTSSQHQNKKVECADSLFDYLFAAMIDTLRTGGDQGPRKEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTANDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIRRSGSGSSSSASLSAR 196
            MAADLLKKPSSTSSQHQNKKVECADSLFDYLFAAMIDTLRTGGDQGPRKEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTANDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIRRSGSGSSSSASLSAR
Sbjct:    8 MAADLLKKPSSTSSQHQNKKVECADSLFDYLFAAMIDTLRTGGDQGPRKEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTANDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIRRSGSGSSSSASLSAR 203          
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|585106600|gb|EWM24968.1| (transport protein particle bet3 containing protein [Nannochloropsis gaditana])

HSP 1 Score: 402.905 bits (1034), Expect = 3.409e-142
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
Query:    1 MAADLLKKPSSTSSQHQNKKVECADSLFDYLFAAMIDTLRTGGDQGPRKEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTANDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIRRSGSGSSSSASLSAR 196
            MAADLLKKPSSTSSQHQNKKVECADSLFDYLFAAMIDTLRTGGDQGPRKEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTANDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIRRSGSGSSSSASLSAR
Sbjct:    1 MAADLLKKPSSTSSQHQNKKVECADSLFDYLFAAMIDTLRTGGDQGPRKEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTANDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIRRSGSGSSSSASLSAR 196          
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|676398289|ref|XP_009042422.1| (hypothetical protein AURANDRAFT_59697 [Aureococcus anophagefferens] >gi|323446866|gb|EGB02881.1| hypothetical protein AURANDRAFT_59697 [Aureococcus anophagefferens])

HSP 1 Score: 152.14 bits (383), Expect = 1.228e-43
Identity = 75/137 (54.74%), Postives = 99/137 (72.26%), Query Frame = 0
Query:   46 GPRKEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTAND-ESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIR 181
            GP+  E  +      G++VGYR  E IAQ R LAA+ LEV  +KFICK+ W EIF KQIDKLQTN++GVFVL+D  FRWLA  +++D E+ +R  A +L FPCG+++GAL NLGI +TV AE    +PSCSF+I+I+
Sbjct:   19 GPQPGETASSRPELHGYEVGYRFVERIAQARALAADHLEV--IKFICKDVWNEIFGKQIDKLQTNHRGVFVLKDYTFRWLARVSSDDAEAMKRVTANILQFPCGVLRGALANLGIVATVTAEYG-TLPSCSFSIRIQ 152          
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|635366924|emb|CCI44812.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 149.828 bits (377), Expect = 4.069e-43
Identity = 74/134 (55.22%), Postives = 98/134 (73.13%), Query Frame = 0
Query:   49 KEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTAN-DESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIR 181
            +E+ L + +  +GFDVGYR AE  A+ R     ++ ++V+KFICKEFWI +FKKQIDKLQTN++GVFVL+D  FRWL+ F+A+ DESTR  A   L FPCG I+GAL NLGI + V A+V  ++P C F IKI+
Sbjct:    2 REDFLKK-LEGLGFDVGYRFAERYAKDR--PRMTMPLDVIKFICKEFWISVFKKQIDKLQTNHRGVFVLQDFSFRWLSSFSASADESTREMALVYLVFPCGFIRGALTNLGITAIVNADVT-SLPGCLFNIKIK 131          
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|676392503|ref|XP_009039529.1| (hypothetical protein AURANDRAFT_7703, partial [Aureococcus anophagefferens] >gi|323449804|gb|EGB05689.1| hypothetical protein AURANDRAFT_7703, partial [Aureococcus anophagefferens])

HSP 1 Score: 148.288 bits (373), Expect = 1.630e-42
Identity = 71/122 (58.20%), Postives = 93/122 (76.23%), Query Frame = 0
Query:   61 GFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTAND-ESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIR 181
            G++VGYR  E IAQ R LAA+ LE   +KFICK+ W EIF KQIDKLQTN++GVFVL+D  FRWLA  +++D E+ +R  A +L FPCG+++GAL NLGI +TV AE    +PSCSF+I+I+
Sbjct:   12 GYEVGYRFVERIAQARALAADHLEA--IKFICKDVWNEIFGKQIDKLQTNHRGVFVLKDYTFRWLARVSSDDAEAMKRVTANILQFPCGVLRGALANLGIVATVTAEYG-TLPSCSFSIRIQ 130          
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|635366923|emb|CCI44811.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 149.058 bits (375), Expect = 2.865e-42
Identity = 74/134 (55.22%), Postives = 98/134 (73.13%), Query Frame = 0
Query:   49 KEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTAN-DESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIR 181
            +E+ L + +  +GFDVGYR AE  A+ R     ++ ++V+KFICKEFWI +FKKQIDKLQTN++GVFVL+D  FRWL+ F+A+ DESTR  A   L FPCG I+GAL NLGI + V A+V  ++P C F IKI+
Sbjct:   47 REDFL-KKLEGLGFDVGYRFAERYAKDR--PRMTMPLDVIKFICKEFWISVFKKQIDKLQTNHRGVFVLQDFSFRWLSSFSASADESTREMALVYLVFPCGFIRGALTNLGITAIVNADVT-SLPGCLFNIKIK 176          
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|673018736|ref|XP_008863329.1| (hypothetical protein H310_01802 [Aphanomyces invadans] >gi|574480243|gb|ETW07236.1| hypothetical protein H310_01802 [Aphanomyces invadans])

HSP 1 Score: 142.895 bits (359), Expect = 7.031e-40
Identity = 80/177 (45.20%), Postives = 112/177 (63.28%), Query Frame = 0
Query:   15 QHQNKKVECADSLFDYLFA----AMIDTLRTGGDQGPRK-----EELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTA-NDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIR 181
            Q Q+   E A+S F  L+A    +M++   T  ++ P       +EL A+ + A G+DVGYR  E  ++ R    E L  +V+KF+CK+FWI IFKKQIDKLQTN++GVFVL+D  FRW+   +  ND  +++ A   L FPCGL++GAL NLGI + V A++  AVP C F IK+R
Sbjct:    3 QGQSGPHEVAESCFLQLYAEAVRSMVERHPTSAEKSPEDVWTPSDELTAK-LEAFGYDVGYRFVERFSRDRPRMLEPL--DVIKFLCKDFWIHIFKKQIDKLQTNHRGVFVLQDFNFRWIQALSGENDAESKQKALVFLIFPCGLLRGALANLGILAIVNADLN-AVPGCVFNIKLR 175          
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|953494614|emb|CEG44208.1| (Transport protein particle (TRAPP) complex subunit [Plasmopara halstedii])

HSP 1 Score: 142.51 bits (358), Expect = 1.322e-39
Identity = 79/177 (44.63%), Postives = 108/177 (61.02%), Query Frame = 0
Query:   22 ECADSLFDYLFAAMIDTL-------RTGGDQGPRKEELLAE------TVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFT-ANDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEV--APAVPSCSFTIKIRR 182
            E AD  F  L+  ++ ++           +  P  EE  A        + A+G+DVG R AE IA+ R    ESL  +V+KF+CK+FWI IFKKQIDKLQTN++GVFV++D  FRWLA  + A DE TR  A   L FPCG+I+GAL NLG+ + V A++    A+P C F IK+++
Sbjct:    3 EVADGCFQQLYGEIVRSMLEYQPSQTKDTNATPTVEEEAAHREAFIIKLEAMGYDVGSRFAERIARDRPRMVESL--DVIKFVCKDFWIAIFKKQIDKLQTNHRGVFVVQDFHFRWLAGISAATDEETREKALVFLVFPCGIIRGALANLGLTAIVNADIPDVHALPGCLFNIKLKQ 177          
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|1173926886|gb|OQR81006.1| (trafficking protein particle complex subunit 6B [Achlya hypogyna])

HSP 1 Score: 139.813 bits (351), Expect = 9.417e-39
Identity = 71/161 (44.10%), Postives = 103/161 (63.98%), Query Frame = 0
Query:   22 ECADSLFDYLFAAMIDTLRTGGDQGPRKEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTA-NDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIR 181
            E A++ F +L+   ++        G    +L A+ + A G+DVGYR  E  ++ R    E L++  +KFICK+FWI +FKKQIDKLQTN++GVFVL+D  FRW+   +A  D  +++ A   L FPCG+++GAL NLG+ + V A++  AVP C F IKIR
Sbjct:    4 EVAETSFLHLYGEAVERHEAATGSGVLDNDLTAK-LEAFGYDVGYRFVERFSRDRARLVEPLDI--IKFICKDFWIHVFKKQIDKLQTNHRGVFVLQDFNFRWIHALSAETDAESKQKALIFLVFPCGVLRGALANLGLLAIVNADL-NAVPGCVFNIKIR 160          
BLAST of EWM24968.1 vs. NCBI_GenBank
Match: gi|698817104|ref|XP_009841581.1| (hypothetical protein H257_15251 [Aphanomyces astaci] >gi|574103362|gb|ETV68904.1| hypothetical protein H257_15251 [Aphanomyces astaci])

HSP 1 Score: 139.813 bits (351), Expect = 1.280e-38
Identity = 76/176 (43.18%), Postives = 108/176 (61.36%), Query Frame = 0
Query:   15 QHQNKKVECADSLFDYLFA----AMIDTLRTGGDQGPRK----EELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTA-NDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIR 181
            Q Q    E A+S F  L+A    +M++   +  ++ P       + L   + A G+DVGYR  E  ++ R    E L  +V+KF+CK+FWI IFKKQIDKLQTN++GVFVL+D  FRW+   +  +D  +++ A   L FPCGL++GAL NLGI + V A++  AVP C F IK+R
Sbjct:    2 QQQQAPHEVAESCFLQLYAEAVRSMVERHPSTAEKAPEDAWAPSDDLTAKLEAFGYDVGYRFVERFSRDRPRLLEPL--DVIKFLCKDFWIHIFKKQIDKLQTNHRGVFVLQDFNFRWIQALSGEHDAESKQKALVFLVFPCGLLRGALANLGILAIVNADLN-AVPGCVFNIKLR 174          
The following BLAST results are available for this feature:
BLAST of EWM24968.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553180642|ref|XP_005853437.1|2.396e-142100.00transport protein particle bet3 containing protein... [more]
gi|585106600|gb|EWM24968.1|3.409e-142100.00transport protein particle bet3 containing protein... [more]
gi|676398289|ref|XP_009042422.1|1.228e-4354.74hypothetical protein AURANDRAFT_59697 [Aureococcus... [more]
gi|635366924|emb|CCI44812.1|4.069e-4355.22unnamed protein product [Albugo candida][more]
gi|676392503|ref|XP_009039529.1|1.630e-4258.20hypothetical protein AURANDRAFT_7703, partial [Aur... [more]
gi|635366923|emb|CCI44811.1|2.865e-4255.22unnamed protein product [Albugo candida][more]
gi|673018736|ref|XP_008863329.1|7.031e-4045.20hypothetical protein H310_01802 [Aphanomyces invad... [more]
gi|953494614|emb|CEG44208.1|1.322e-3944.63Transport protein particle (TRAPP) complex subunit... [more]
gi|1173926886|gb|OQR81006.1|9.417e-3944.10trafficking protein particle complex subunit 6B [A... [more]
gi|698817104|ref|XP_009841581.1|1.280e-3843.18hypothetical protein H257_15251 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5716rna5716Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications