EWM24988.1, cds5687 (CDS) Nannochloropsis gaditana

Overview
NameEWM24988.1
Unique Namecds5687
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:625059..625197 -
Alignment locationCM002466.1:624820..624938 -
Alignment locationCM002466.1:624578..624674 -
Alignment locationCM002466.1:624054..624460 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24988.1
Product20 kda chaperonin
Orig transcript idgnl|cribi|Naga_100122g11.3575.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:625059..625197 -
CM002466.1supercontigCM002466.1:624820..624938 -
CM002466.1supercontigCM002466.1:624578..624674 -
CM002466.1supercontigCM002466.1:624054..624460 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006457protein folding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011032GroES-like
IPR020818Chaperonin_Cpn10
Homology
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|585106621|gb|EWM24988.1| (20 kda chaperonin [Nannochloropsis gaditana])

HSP 1 Score: 511.146 bits (1315), Expect = 0.000e+0
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0
Query:    1 MPAALALRACVFVCLPFLLGAFVLPLFPGQKTSFSARSSFPKTMTRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMTKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
            MPAALALRACVFVCLPFLLGAFVLPLFPGQKTSFSARSSFPKTMTRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMTKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW
Sbjct:    1 MPAALALRACVFVCLPFLLGAFVLPLFPGQKTSFSARSSFPKTMTRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMTKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253          
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|224009704|ref|XP_002293810.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970482|gb|EED88819.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 218.394 bits (555), Expect = 1.069e-67
Identity = 113/234 (48.29%), Postives = 157/234 (67.09%), Query Frame = 0
Query:   21 AFVLPLFPGQKTSFSARSSFPKTMTRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMTK-ARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
            AF  P      TS S+R     T   +  L+G+EI G L P  N +LVKV + E+ +AGGI+L   AK K TEG V++ GPG+ H E+ +L PMPV PG+ V+YGK+DG  ++YDG  H LIRDDDIL+ + G  +TLD V+ V D +LVKV   QE ++GG+L+A +  K ++P+ GEV+KVGPGR+AS GE+  V +  GD VKF+DFAG E++I+ E Y V+   D+LA++
Sbjct:   18 AFTTPY-----TSLSSR-----TRPLSVKLEGREIDGVLTPTNNFVLVKVAEIEEETAGGILLTGSAKIKKTEGTVISTGPGKTHQESGILFPMPVTPGNGVVYGKYDGTEIVYDGDRHTLIRDDDILVKFDG-KLTLDNVDVVSDNVLVKVNDDQEATSGGLLIAATSKKGSKPSTGEVVKVGPGRMASNGEIMTVDISVGDEVKFRDFAGNEVQIEGEEYAVVRMTDILAKF 240          
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|1210522546|dbj|GAX18559.1| (chaperonin GroES [Fistulifera solaris])

HSP 1 Score: 204.527 bits (519), Expect = 2.615e-62
Identity = 108/231 (46.75%), Postives = 151/231 (65.37%), Query Frame = 0
Query:   32 TSFSARSSF-----PKTMT---RAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMTKA-RPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
            T  S  SSF     P T T    A  LDG++I G + PL N +LVK   A+D + GGI+L  +AK   TEG V A GPG+ H ++ + + MPVK G  V+YGKFDG  +  DG PH LIRDDD+L+ + G  +TL++V+ V D +LV V  ++  + GGILLA S ++  R + GEV+KVGPG++AS GE+  + V PGD VKF+DFAG E++I+ + Y V+  VD+LA++
Sbjct:   11 TLISTASSFLVAHRPSTSTITCHAAKLDGRKIKGDVVPLNNFILVKKAPAQDKTEGGILLTGKAKIVKTEGTVQAVGPGKTHQDSGITVQMPVKTGESVVYGKFDGTEIDLDGQPHTLIRDDDVLVKFHGDQLTLESVDVVFDNVLVAVDSSESATEGGILLAKSSSQTKRASTGEVVKVGPGKMASNGELMTMDVAPGDMVKFRDFAGNEVEIEGKEYSVVKMVDILAKY 241          
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|1072233317|gb|OEU18048.1| (chaperonin Cpn10 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 203.371 bits (516), Expect = 2.714e-62
Identity = 99/206 (48.06%), Postives = 146/206 (70.87%), Query Frame = 0
Query:   50 LDGQEIPG-PLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPS-MTKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
            +DG+ I G  + P  N +LVKV  A++ + GGI+L  ++K + TEG VV+ GPG+ HP+T  ++ MPV  G  V+YG+FDG  +  DG  H LIRDDDIL+ +TG  +TLD+   VRD ILV V+  +  + GGIL+A +  T+ RP+ G+V+KVGPGR A+ GE+ D++++ GD VKF+DFAG EI+I DE Y V++++D+LA++
Sbjct:    4 IDGRTIDGGQVVPTNNFVLVKVVAAKEETEGGILLTGKSKIQKTEGTVVSVGPGKTHPDTGAVIVMPVVEGDNVVYGEFDGTEIDIDGDKHTLIRDDDILIKFTGDELTLDSCSAVRDSILVYVETKETSTEGGILIASTKNTQNRPSTGKVVKVGPGRFATNGELMDMEIEEGDYVKFRDFAGNEIEINDEEYTVVHALDILAKF 209          
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|1210515959|dbj|GAX25044.1| (chaperonin GroES [Fistulifera solaris])

HSP 1 Score: 203.756 bits (517), Expect = 6.105e-62
Identity = 104/234 (44.44%), Postives = 151/234 (64.53%), Query Frame = 0
Query:   23 VLPLFPGQKTSF--SARSSFPKTMTRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMTKA-RPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
            +L       +SF  + R S    +  A  LDG++I G + PL N +LVK   A+D + GGI+L  +AK   TEG V A GPG+ H ++ + + MPVK G  V+YGKFDG  +  DG PH LIRDDD+L+ + G  +TL++V  V D +LV V  ++  + GGILLA S ++  R + GEV+KVGPG++AS GE+  + V PGD +KF+DFAG E++I+ + Y V+  VD+LA++
Sbjct:    8 ILTTLISTASSFLVAHRPSTSTIICHAAKLDGRKIKGDVVPLNNFILVKKAPAQDKTEGGILLTGKAKIVKTEGTVQAVGPGKTHQDSGITVQMPVKVGESVVYGKFDGTEIDLDGQPHTLIRDDDVLVKFHGDQLTLESVNVVFDNVLVAVDSSESATEGGILLAKSSSQTKRASTGEVVKVGPGKMASNGELMTMDVTPGDMIKFRDFAGNEVEIEGKEYSVVKMVDILAKY 241          
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|397616939|gb|EJK64207.1| (hypothetical protein THAOC_15086 [Thalassiosira oceanica])

HSP 1 Score: 202.601 bits (514), Expect = 1.787e-61
Identity = 99/205 (48.29%), Postives = 139/205 (67.80%), Query Frame = 0
Query:   50 LDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMTK-ARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
            L+G+EI G L P  N +LVK+   ED + GGI+L   AK K TEG V++AGPG+ H E+ +L PMPV+ G  V+YGK+DG  V YDG  H LIRDDDIL+ + G  +TLD  + + D +LVKV    E++A G+L+A S  K  +P+ G V+KVGPGR+AS GE+  V +  GD VK++DFAG E+ I+ + + V+   D+LA++
Sbjct:   38 LEGREIEGALTPTNNFVLVKIAPIEDETEGGILLTGSAKIKKTEGTVISAGPGKTHQESGLLFPMPVESGDGVVYGKYDGTEVEYDGDKHTLIRDDDILVKFKGDKLTLDTADVISDNVLVKVDDDGEETASGLLIAASAKKGGKPSTGTVVKVGPGRMASNGEIMTVDIGVGDMVKYRDFAGNEVTIEGDEFSVVRMTDILAKF 242          
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|397568880|gb|EJK46404.1| (hypothetical protein THAOC_34927 [Thalassiosira oceanica])

HSP 1 Score: 202.601 bits (514), Expect = 2.519e-61
Identity = 103/223 (46.19%), Postives = 148/223 (66.37%), Query Frame = 0
Query:   30 QKTSFSARSSFPKTMTRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPS-MTKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLA 251
            Q +S  + ++  + + +   LDG+ I GP+ PL N +LV+ KD+ D + GGI+LPDQ+KE+PTEGEVVAAGPG+ HP T V +  PV  G  VL+GKFDG  + Y+  P  +IRDDD+LL + G  MT++ V   RD +LV++ K + +++ GI++A S M +  P EG+VIKVG GR+ S GE +D  V  GD VKFKD+AG  +KI+     ++  VD+L 
Sbjct:   30 QSSSSLSSTAVTEELHKQCTLDGKTIRGPITPLGNFVLVRTKDSLDATDGGILLPDQSKERPTEGEVVAAGPGKLHPHTGVRIVNPVSTGDSVLFGKFDGHDMEYNNEPVTMIRDDDVLLHYKGVRMTMENVSPCRDYVLVELTKQKAETSSGIVVAESVMKEYEPCEGKVIKVGEGRMTSKGEFSDSPVSVGDRVKFKDYAGNSVKIEGVECSLVRMVDILC 252          
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|219120957|ref|XP_002185710.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582559|gb|ACI65180.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 197.978 bits (502), Expect = 1.206e-59
Identity = 107/246 (43.50%), Postives = 157/246 (63.82%), Query Frame = 0
Query:   10 CVFVCLPFLLGAF-VLPLFPGQKTSFSARSSFPKTMTRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMT-KARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
            C  + L  +  AF    L PG      +R +F  T   A  LDG++I G ++PL N +LVK+ +A + + GGI+L  +AK K TEG VVA GPGR H ++ ++  MPV  G  V+YGKFDG  +   GA HVLIRDDDIL+ +TG  ++LD+V+ VRD +LV V+  + ++ GGIL+A S +   +P+ G V+KVGPG++AS G +  + V   D VKF+DFAG +++I  + Y V+   D+LA++
Sbjct:    5 CAAISLLVIESAFGFTSLAPG------SRPAFSLTQCSATTLDGRKITGDVKPLNNFVLVKIGEAREQTEGGILLTGKAKIKKTEGTVVAIGPGRTHQDSGIVFDMPVSEGQGVVYGKFDGTEINIGGAKHVLIRDDDILVKFTG-DLSLDSVDMVRDNVLVYVENDESETDGGILIAKSSSADKKPSTGIVVKVGPGKMASDGSLMSMDVAVDDMVKFRDFAGMDVEIDGKEYSVVKMADILAQF 243          
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|1072234247|gb|OEU18977.1| (GroES-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 182.956 bits (463), Expect = 2.578e-53
Identity = 94/205 (45.85%), Postives = 138/205 (67.32%), Query Frame = 0
Query:   50 LDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSA--GGILLAPSMTKAR-PTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLA 251
            LDG EI GP+ PL N +LVKVKD    ++GGI+LPDQ+KE+PTEG V+AAGPG+ HP TA+ +  P+K G  VLYGK+DG +++Y+     +IRDDD LL + G +M LD V  VRD +LV + +  E  A   G+++A  +     P EG V+K+G GR+ S+G+++    K G+ +KFKD+AG ++ I  + Y V+ +V++L 
Sbjct:   61 LDGDEIRGPITPLRNFVLVKVKDTLTATSGGILLPDQSKERPTEGLVIAAGPGKIHPFTAIRIDNPIKEGMSVLYGKYDGKAIVYNDDSCQMIRDDDCLLYYNGITMKLDNVFPVRDYVLVALDEDPESLATKSGVVIASQVVADDVPCEGTVVKLGEGRMNSSGKLSPSPAKVGERIKFKDYAGNDVNINGKPYSVVKNVNILC 265          
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|298714603|emb|CBJ27594.1| (chaperonin [Ectocarpus siliculosus])

HSP 1 Score: 179.489 bits (454), Expect = 5.191e-52
Identity = 92/218 (42.20%), Postives = 135/218 (61.93%), Query Frame = 0
Query:   37 RSSFPKTMTRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMT-KARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
            R++ P   +    L+   I  PL+P+ N +LVK+  A   +AGGIVLPD+A++ P EG VVA GPGR HP T  L+PM V  G  VL+ ++ G  V Y G  H+ I DDD++L + G  +T D+++ VRD++LV  +K + ++  GI++A S   K + ++G V+ +G GR  STGE+     K GD VKF ++A  EIKI+   Y V+  VD +ARW
Sbjct:   55 RATSPSMSSLVITLEDDVIDKPLQPVGNYILVKMFAAVSRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVKYCGEDHMFIMDDDLVLVYRGPELTEDSLKMVRDQVLVVTEKGESETDAGIVIAASTAEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYAPVEIKIKGSYYAVVRMVDCIARW 272          
The following BLAST results are available for this feature:
BLAST of EWM24988.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106621|gb|EWM24988.1|0.000e+0100.0020 kda chaperonin [Nannochloropsis gaditana][more]
gi|224009704|ref|XP_002293810.1|1.069e-6748.29predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210522546|dbj|GAX18559.1|2.615e-6246.75chaperonin GroES [Fistulifera solaris][more]
gi|1072233317|gb|OEU18048.1|2.714e-6248.06chaperonin Cpn10 [Fragilariopsis cylindrus CCMP110... [more]
gi|1210515959|dbj|GAX25044.1|6.105e-6244.44chaperonin GroES [Fistulifera solaris][more]
gi|397616939|gb|EJK64207.1|1.787e-6148.29hypothetical protein THAOC_15086 [Thalassiosira oc... [more]
gi|397568880|gb|EJK46404.1|2.519e-6146.19hypothetical protein THAOC_34927 [Thalassiosira oc... [more]
gi|219120957|ref|XP_002185710.1|1.206e-5943.50predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072234247|gb|OEU18977.1|2.578e-5345.85GroES-like protein [Fragilariopsis cylindrus CCMP1... [more]
gi|298714603|emb|CBJ27594.1|5.191e-5242.20chaperonin [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5702rna5702Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications