EWM24988.1, cds5687 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|585106621|gb|EWM24988.1| (20 kda chaperonin [Nannochloropsis gaditana]) HSP 1 Score: 511.146 bits (1315), Expect = 0.000e+0 Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0
Query: 1 MPAALALRACVFVCLPFLLGAFVLPLFPGQKTSFSARSSFPKTMTRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMTKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
MPAALALRACVFVCLPFLLGAFVLPLFPGQKTSFSARSSFPKTMTRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMTKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW
Sbjct: 1 MPAALALRACVFVCLPFLLGAFVLPLFPGQKTSFSARSSFPKTMTRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMTKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|224009704|ref|XP_002293810.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970482|gb|EED88819.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 218.394 bits (555), Expect = 1.069e-67 Identity = 113/234 (48.29%), Postives = 157/234 (67.09%), Query Frame = 0
Query: 21 AFVLPLFPGQKTSFSARSSFPKTMTRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMTK-ARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
AF P TS S+R T + L+G+EI G L P N +LVKV + E+ +AGGI+L AK K TEG V++ GPG+ H E+ +L PMPV PG+ V+YGK+DG ++YDG H LIRDDDIL+ + G +TLD V+ V D +LVKV QE ++GG+L+A + K ++P+ GEV+KVGPGR+AS GE+ V + GD VKF+DFAG E++I+ E Y V+ D+LA++
Sbjct: 18 AFTTPY-----TSLSSR-----TRPLSVKLEGREIDGVLTPTNNFVLVKVAEIEEETAGGILLTGSAKIKKTEGTVISTGPGKTHQESGILFPMPVTPGNGVVYGKYDGTEIVYDGDRHTLIRDDDILVKFDG-KLTLDNVDVVSDNVLVKVNDDQEATSGGLLIAATSKKGSKPSTGEVVKVGPGRMASNGEIMTVDISVGDEVKFRDFAGNEVQIEGEEYAVVRMTDILAKF 240
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|1210522546|dbj|GAX18559.1| (chaperonin GroES [Fistulifera solaris]) HSP 1 Score: 204.527 bits (519), Expect = 2.615e-62 Identity = 108/231 (46.75%), Postives = 151/231 (65.37%), Query Frame = 0
Query: 32 TSFSARSSF-----PKTMT---RAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMTKA-RPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
T S SSF P T T A LDG++I G + PL N +LVK A+D + GGI+L +AK TEG V A GPG+ H ++ + + MPVK G V+YGKFDG + DG PH LIRDDD+L+ + G +TL++V+ V D +LV V ++ + GGILLA S ++ R + GEV+KVGPG++AS GE+ + V PGD VKF+DFAG E++I+ + Y V+ VD+LA++
Sbjct: 11 TLISTASSFLVAHRPSTSTITCHAAKLDGRKIKGDVVPLNNFILVKKAPAQDKTEGGILLTGKAKIVKTEGTVQAVGPGKTHQDSGITVQMPVKTGESVVYGKFDGTEIDLDGQPHTLIRDDDVLVKFHGDQLTLESVDVVFDNVLVAVDSSESATEGGILLAKSSSQTKRASTGEVVKVGPGKMASNGELMTMDVAPGDMVKFRDFAGNEVEIEGKEYSVVKMVDILAKY 241
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|1072233317|gb|OEU18048.1| (chaperonin Cpn10 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 203.371 bits (516), Expect = 2.714e-62 Identity = 99/206 (48.06%), Postives = 146/206 (70.87%), Query Frame = 0
Query: 50 LDGQEIPG-PLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPS-MTKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
+DG+ I G + P N +LVKV A++ + GGI+L ++K + TEG VV+ GPG+ HP+T ++ MPV G V+YG+FDG + DG H LIRDDDIL+ +TG +TLD+ VRD ILV V+ + + GGIL+A + T+ RP+ G+V+KVGPGR A+ GE+ D++++ GD VKF+DFAG EI+I DE Y V++++D+LA++
Sbjct: 4 IDGRTIDGGQVVPTNNFVLVKVVAAKEETEGGILLTGKSKIQKTEGTVVSVGPGKTHPDTGAVIVMPVVEGDNVVYGEFDGTEIDIDGDKHTLIRDDDILIKFTGDELTLDSCSAVRDSILVYVETKETSTEGGILIASTKNTQNRPSTGKVVKVGPGRFATNGELMDMEIEEGDYVKFRDFAGNEIEINDEEYTVVHALDILAKF 209
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|1210515959|dbj|GAX25044.1| (chaperonin GroES [Fistulifera solaris]) HSP 1 Score: 203.756 bits (517), Expect = 6.105e-62 Identity = 104/234 (44.44%), Postives = 151/234 (64.53%), Query Frame = 0
Query: 23 VLPLFPGQKTSF--SARSSFPKTMTRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMTKA-RPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
+L +SF + R S + A LDG++I G + PL N +LVK A+D + GGI+L +AK TEG V A GPG+ H ++ + + MPVK G V+YGKFDG + DG PH LIRDDD+L+ + G +TL++V V D +LV V ++ + GGILLA S ++ R + GEV+KVGPG++AS GE+ + V PGD +KF+DFAG E++I+ + Y V+ VD+LA++
Sbjct: 8 ILTTLISTASSFLVAHRPSTSTIICHAAKLDGRKIKGDVVPLNNFILVKKAPAQDKTEGGILLTGKAKIVKTEGTVQAVGPGKTHQDSGITVQMPVKVGESVVYGKFDGTEIDLDGQPHTLIRDDDVLVKFHGDQLTLESVNVVFDNVLVAVDSSESATEGGILLAKSSSQTKRASTGEVVKVGPGKMASNGELMTMDVTPGDMIKFRDFAGNEVEIEGKEYSVVKMVDILAKY 241
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|397616939|gb|EJK64207.1| (hypothetical protein THAOC_15086 [Thalassiosira oceanica]) HSP 1 Score: 202.601 bits (514), Expect = 1.787e-61 Identity = 99/205 (48.29%), Postives = 139/205 (67.80%), Query Frame = 0
Query: 50 LDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMTK-ARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
L+G+EI G L P N +LVK+ ED + GGI+L AK K TEG V++AGPG+ H E+ +L PMPV+ G V+YGK+DG V YDG H LIRDDDIL+ + G +TLD + + D +LVKV E++A G+L+A S K +P+ G V+KVGPGR+AS GE+ V + GD VK++DFAG E+ I+ + + V+ D+LA++
Sbjct: 38 LEGREIEGALTPTNNFVLVKIAPIEDETEGGILLTGSAKIKKTEGTVISAGPGKTHQESGLLFPMPVESGDGVVYGKYDGTEVEYDGDKHTLIRDDDILVKFKGDKLTLDTADVISDNVLVKVDDDGEETASGLLIAASAKKGGKPSTGTVVKVGPGRMASNGEIMTVDIGVGDMVKYRDFAGNEVTIEGDEFSVVRMTDILAKF 242
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|397568880|gb|EJK46404.1| (hypothetical protein THAOC_34927 [Thalassiosira oceanica]) HSP 1 Score: 202.601 bits (514), Expect = 2.519e-61 Identity = 103/223 (46.19%), Postives = 148/223 (66.37%), Query Frame = 0
Query: 30 QKTSFSARSSFPKTMTRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPS-MTKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLA 251
Q +S + ++ + + + LDG+ I GP+ PL N +LV+ KD+ D + GGI+LPDQ+KE+PTEGEVVAAGPG+ HP T V + PV G VL+GKFDG + Y+ P +IRDDD+LL + G MT++ V RD +LV++ K + +++ GI++A S M + P EG+VIKVG GR+ S GE +D V GD VKFKD+AG +KI+ ++ VD+L
Sbjct: 30 QSSSSLSSTAVTEELHKQCTLDGKTIRGPITPLGNFVLVRTKDSLDATDGGILLPDQSKERPTEGEVVAAGPGKLHPHTGVRIVNPVSTGDSVLFGKFDGHDMEYNNEPVTMIRDDDVLLHYKGVRMTMENVSPCRDYVLVELTKQKAETSSGIVVAESVMKEYEPCEGKVIKVGEGRMTSKGEFSDSPVSVGDRVKFKDYAGNSVKIEGVECSLVRMVDILC 252
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|219120957|ref|XP_002185710.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582559|gb|ACI65180.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 197.978 bits (502), Expect = 1.206e-59 Identity = 107/246 (43.50%), Postives = 157/246 (63.82%), Query Frame = 0
Query: 10 CVFVCLPFLLGAF-VLPLFPGQKTSFSARSSFPKTMTRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMT-KARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
C + L + AF L PG +R +F T A LDG++I G ++PL N +LVK+ +A + + GGI+L +AK K TEG VVA GPGR H ++ ++ MPV G V+YGKFDG + GA HVLIRDDDIL+ +TG ++LD+V+ VRD +LV V+ + ++ GGIL+A S + +P+ G V+KVGPG++AS G + + V D VKF+DFAG +++I + Y V+ D+LA++
Sbjct: 5 CAAISLLVIESAFGFTSLAPG------SRPAFSLTQCSATTLDGRKITGDVKPLNNFVLVKIGEAREQTEGGILLTGKAKIKKTEGTVVAIGPGRTHQDSGIVFDMPVSEGQGVVYGKFDGTEINIGGAKHVLIRDDDILVKFTG-DLSLDSVDMVRDNVLVYVENDESETDGGILIAKSSSADKKPSTGIVVKVGPGKMASDGSLMSMDVAVDDMVKFRDFAGMDVEIDGKEYSVVKMADILAQF 243
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|1072234247|gb|OEU18977.1| (GroES-like protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 182.956 bits (463), Expect = 2.578e-53 Identity = 94/205 (45.85%), Postives = 138/205 (67.32%), Query Frame = 0
Query: 50 LDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSA--GGILLAPSMTKAR-PTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLA 251
LDG EI GP+ PL N +LVKVKD ++GGI+LPDQ+KE+PTEG V+AAGPG+ HP TA+ + P+K G VLYGK+DG +++Y+ +IRDDD LL + G +M LD V VRD +LV + + E A G+++A + P EG V+K+G GR+ S+G+++ K G+ +KFKD+AG ++ I + Y V+ +V++L
Sbjct: 61 LDGDEIRGPITPLRNFVLVKVKDTLTATSGGILLPDQSKERPTEGLVIAAGPGKIHPFTAIRIDNPIKEGMSVLYGKYDGKAIVYNDDSCQMIRDDDCLLYYNGITMKLDNVFPVRDYVLVALDEDPESLATKSGVVIASQVVADDVPCEGTVVKLGEGRMNSSGKLSPSPAKVGERIKFKDYAGNDVNINGKPYSVVKNVNILC 265
BLAST of EWM24988.1 vs. NCBI_GenBank
Match: gi|298714603|emb|CBJ27594.1| (chaperonin [Ectocarpus siliculosus]) HSP 1 Score: 179.489 bits (454), Expect = 5.191e-52 Identity = 92/218 (42.20%), Postives = 135/218 (61.93%), Query Frame = 0
Query: 37 RSSFPKTMTRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMT-KARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
R++ P + L+ I PL+P+ N +LVK+ A +AGGIVLPD+A++ P EG VVA GPGR HP T L+PM V G VL+ ++ G V Y G H+ I DDD++L + G +T D+++ VRD++LV +K + ++ GI++A S K + ++G V+ +G GR STGE+ K GD VKF ++A EIKI+ Y V+ VD +ARW
Sbjct: 55 RATSPSMSSLVITLEDDVIDKPLQPVGNYILVKMFAAVSRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVKYCGEDHMFIMDDDLVLVYRGPELTEDSLKMVRDQVLVVTEKGESETDAGIVIAASTAEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYAPVEIKIKGSYYAVVRMVDCIARW 272 The following BLAST results are available for this feature:
BLAST of EWM24988.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|