EWM24994.1, cds5679 (CDS) Nannochloropsis gaditana

Overview
NameEWM24994.1
Unique Namecds5679
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:602089..602533 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24994.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101727g1.8723.mrna
GbkeyCDS
End range.
End range602533
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:602089..602533 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM24994.1 vs. NCBI_GenBank
Match: gi|585106628|gb|EWM24994.1| (hypothetical protein Naga_101727g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 303.523 bits (776), Expect = 2.373e-104
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0 
Query:    1 MFITYIILACEFVSIRMRQIAVWARRWTSKQKPSSQLLLLLGLIFCAQLYIIFHSSSSSCAGKEQHAIPTPASLAASPSSSPTVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLMERVDSNSVSGWEKNPIQDVAGKKKEAF 148
            MFITYIILACEFVSIRMRQIAVWARRWTSKQKPSSQLLLLLGLIFCAQLYIIFHSSSSSCAGKEQHAIPTPASLAASPSSSPTVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLMERVDSNSVSGWEKNPIQDVAGKKKEAF
Sbjct:    1 MFITYIILACEFVSIRMRQIAVWARRWTSKQKPSSQLLLLLGLIFCAQLYIIFHSSSSSCAGKEQHAIPTPASLAASPSSSPTVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLMERVDSNSVSGWEKNPIQDVAGKKKEAF 148
[Close]
BLAST of EWM24994.1 vs. NCBI_GenBank
Match: gi|585106631|gb|EWM24996.1| (hypothetical protein Naga_100068g30, partial [Nannochloropsis gaditana])

HSP 1 Score: 165.622 bits (418), Expect = 3.366e-50
Identity = 112/124 (90.32%), Postives = 112/124 (90.32%), Query Frame = 0 
Query:   24 ARRWTSKQKPSSQLLLLLGLIFCAQLYIIFHSSSSS-CAGKEQHAIPTPASLAASPSSSPTVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLMERVDSNSVSGWEKNPIQDVAGKKKE 146
             RRW SKQKPSSQLL LLGLIFCAQLYIIFHSSSSS CAGKEQHAIPTPASLAASPSSSPTVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLMERVD NSVSGWEK    DV G KK 
Sbjct:    2 GRRWASKQKPSSQLLSLLGLIFCAQLYIIFHSSSSSSCAGKEQHAIPTPASLAASPSSSPTVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLMERVDPNSVSGWEK----DVTGSKKR 121
[Close]
BLAST of EWM24994.1 vs. NCBI_GenBank
Match: gi|585106121|gb|EWM24604.1| (hypothetical protein Naga_100171g10 [Nannochloropsis gaditana])

HSP 1 Score: 74.7146 bits (182), Expect = 7.629e-13
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 0 
Query:   83 TVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLMERVDSNSVSGWEKNPIQDVAGKK 144
            T+P E P LP    PL VACL++ RTVSTTA+NL R+LMERVD+NS+SGWE     DV G +
Sbjct:   88 TLPYEPPRLP---SPLTVACLSSQRTVSTTAFNLVRILMERVDANSISGWE----HDVVGSR 142
The following BLAST results are available for this feature:
BLAST of EWM24994.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585106628|gb|EWM24994.1|2.373e-104100.00hypothetical protein Naga_101727g1, partial [Nanno... [more]
gi|585106631|gb|EWM24996.1|3.366e-5090.32hypothetical protein Naga_100068g30, partial [Nann... [more]
gi|585106121|gb|EWM24604.1|7.629e-1359.68hypothetical protein Naga_100171g10 [Nannochlorops... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5694rna5694Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications