EWM25012.1, cds5660 (CDS) Nannochloropsis gaditana

Overview
NameEWM25012.1
Unique Namecds5660
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:549477..549539 -
Alignment locationCM002466.1:548335..549366 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25012.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100068g10.2436.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:549477..549539 -
CM002466.1supercontigCM002466.1:548335..549366 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|585106647|gb|EWM25012.1| (hypothetical protein Naga_100068g10 [Nannochloropsis gaditana])

HSP 1 Score: 728.013 bits (1878), Expect = 0.000e+0
Identity = 364/364 (100.00%), Postives = 364/364 (100.00%), Query Frame = 0
Query:    1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPKKTDDGLPKNGLYAYFVRAGHGGYKKWGDDDIAEVKPESEGESSLPVRGYIKKEKRKKEKRSKGEDASKKRKDILLTASEKQEGGEPPRKRRRQRLEEAVSWEALQNPQAGDATVAGDIKFSWHKHIKRVLKAAEENKVPLRQLRKQVVALALERTSSRTAKGSVAGTQSKKALKHAFHRAVDTHDLLHVEDGVVHYRNAEKAVGGAAYGRQKHDVVTAAKKGAFAMKGEGGSDTEEQREQKRRKSRSGGNNKSAKAVDRVEIAERKKSLSKAESTERLSTEAAGKDIAFADRAEKKKKKNKKGSALEEEKKKEATSMNEAKKASGKRNKH 364
            MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPKKTDDGLPKNGLYAYFVRAGHGGYKKWGDDDIAEVKPESEGESSLPVRGYIKKEKRKKEKRSKGEDASKKRKDILLTASEKQEGGEPPRKRRRQRLEEAVSWEALQNPQAGDATVAGDIKFSWHKHIKRVLKAAEENKVPLRQLRKQVVALALERTSSRTAKGSVAGTQSKKALKHAFHRAVDTHDLLHVEDGVVHYRNAEKAVGGAAYGRQKHDVVTAAKKGAFAMKGEGGSDTEEQREQKRRKSRSGGNNKSAKAVDRVEIAERKKSLSKAESTERLSTEAAGKDIAFADRAEKKKKKNKKGSALEEEKKKEATSMNEAKKASGKRNKH
Sbjct:    1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPKKTDDGLPKNGLYAYFVRAGHGGYKKWGDDDIAEVKPESEGESSLPVRGYIKKEKRKKEKRSKGEDASKKRKDILLTASEKQEGGEPPRKRRRQRLEEAVSWEALQNPQAGDATVAGDIKFSWHKHIKRVLKAAEENKVPLRQLRKQVVALALERTSSRTAKGSVAGTQSKKALKHAFHRAVDTHDLLHVEDGVVHYRNAEKAVGGAAYGRQKHDVVTAAKKGAFAMKGEGGSDTEEQREQKRRKSRSGGNNKSAKAVDRVEIAERKKSLSKAESTERLSTEAAGKDIAFADRAEKKKKKNKKGSALEEEKKKEATSMNEAKKASGKRNKH 364          
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|553177723|ref|XP_005852491.1| (hypothetical protein NGA_0337902 [Nannochloropsis gaditana CCMP526] >gi|422296040|gb|EKU23339.1| hypothetical protein NGA_0337902 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 704.901 bits (1818), Expect = 0.000e+0
Identity = 355/364 (97.53%), Postives = 358/364 (98.35%), Query Frame = 0
Query:    1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPKKTDDGLPKNGLYAYFVRAGHGGYKKWGDDDIAEVKPESEGESSLPVRGYIKKEKRKKEKRSKGEDASKKRKDILLTASEKQEGGEPPRKRRRQRLEEAVSWEALQNPQAGDATVAGDIKFSWHKHIKRVLKAAEENKVPLRQLRKQVVALALERTSSRTAKGSVAGTQSKKALKHAFHRAVDTHDLLHVEDGVVHYRNAEKAVGGAAYGRQKHDVVTAAKKGAFAMKGEGGSDTEEQREQKRRKSRSGGNNKSAKAVDRVEIAERKKSLSKAESTERLSTEAAGKDIAFADRAEKKKKKNKKGSALEEEKKKEATSMNEAKKASGKRNKH 364
            MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPKKTDDGLPKNGLYAYFVRAGHGGYKKWGDDDIAEVKPESEGESSLPVRGYIKKEKRKKEKRSKGEDASKKRKDILLTASEKQEGGEPPRKRRRQRLEEA SWEALQNPQAGDATVAGDIKFSWHKHIKR LKAAEE KVPLRQLRKQVVALALERTSSRTAKGSVAGTQSKKALKHAFHRAVDTHDLLHVEDGVVHYRNAEKAVGG AYGRQKHDVVTAAKKGAFAMKGEGGSDTEEQREQKRRKSRSGGNNKSAKAVDRVE+AERKKSLSKA+STER STEAAGKDIAFADRAEKKKKKNKKGSALEEEK+KEATSM EAKKASGKRNKH
Sbjct:    1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPKKTDDGLPKNGLYAYFVRAGHGGYKKWGDDDIAEVKPESEGESSLPVRGYIKKEKRKKEKRSKGEDASKKRKDILLTASEKQEGGEPPRKRRRQRLEEAASWEALQNPQAGDATVAGDIKFSWHKHIKRALKAAEE-KVPLRQLRKQVVALALERTSSRTAKGSVAGTQSKKALKHAFHRAVDTHDLLHVEDGVVHYRNAEKAVGGGAYGRQKHDVVTAAKKGAFAMKGEGGSDTEEQREQKRRKSRSGGNNKSAKAVDRVEVAERKKSLSKAKSTERPSTEAAGKDIAFADRAEKKKKKNKKGSALEEEKRKEATSMKEAKKASGKRNKH 363          
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|1214705839|gb|OWZ17475.1| (hypothetical protein PHMEG_0008578 [Phytophthora megakarya])

HSP 1 Score: 76.2554 bits (186), Expect = 1.326e-12
Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 0
Query:    1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPK--KTDDGLPKNGLYAYFVRAGHGGY--KKW 60
            MED+++ RLHD L KLRP GK GGLGF S  G K  K  DGLP NGLY+ FVR G G Y  K W
Sbjct:    1 MEDEKLIRLHDMLSKLRPGGKKGGLGFASVGGRKSAKRSDGLPNNGLYSMFVRQGEGTYQHKHW 64          
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|301120340|ref|XP_002907897.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102928|gb|EEY60980.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 75.485 bits (184), Expect = 3.626e-12
Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 0
Query:    1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPK--KTDDGLPKNGLYAYFVRAGHGGY--KKW 60
            MED+++ RLHD L KLRP GK GGLGF S  G K  K  DGLP NGLY+ FVR G G Y  K W
Sbjct:    1 MEDEKLIRLHDMLSKLRPGGKKGGLGFASIGGRKGAKRSDGLPNNGLYSMFVRQGEGTYQHKHW 64          
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|953503740|emb|CEG35306.1| (hypothetical protein PHALS_09432 [Plasmopara halstedii])

HSP 1 Score: 73.1738 bits (178), Expect = 5.789e-12
Identity = 41/73 (56.16%), Postives = 48/73 (65.75%), Query Frame = 0
Query:    1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPK--KTDDGLPKNGLYAYFVRAGHGGY--KKW--GDDDIAE 67
            ME++++ RLHD L KLRP GK GGLGF S  G K  K  DGLP NGLY+ FVR G G Y  K W   +DD A+
Sbjct:    1 MEEEKLIRLHDMLAKLRPGGKKGGLGFASIGGRKGVKRSDGLPNNGLYSMFVRQGEGSYQHKHWEENEDDEAD 73          
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|325183047|emb|CCA17502.1| (AlNc14C36G3171 [Albugo laibachii Nc14])

HSP 1 Score: 73.9442 bits (180), Expect = 7.899e-12
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 0
Query:    1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNS---GFGPKKTDDGLPKNGLYAYFVRAGHGGY-KKWGDDDIAEVKP 70
            MED+++ +LHD L +LRP GK GGLGF++   G G     DGLP NGLYA FVR GH  +  +  +DDI +  P
Sbjct:    1 MEDEKLVQLHDVLSRLRPGGKKGGLGFSNLTLGNGKSGRTDGLPDNGLYAMFVREGHNAHIHQRFEDDIDDNAP 74          
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|675168459|ref|XP_008893114.1| (hypothetical protein PPTG_01539 [Phytophthora parasitica INRA-310] >gi|566022412|gb|ETI45323.1| hypothetical protein F443_10056 [Phytophthora parasitica P1569] >gi|568017665|gb|ETL91842.1| hypothetical protein L917_09678 [Phytophthora parasitica] >gi|568048050|gb|ETM45117.1| hypothetical protein L914_09726 [Phytophthora parasitica] >gi|568106682|gb|ETN21312.1| hypothetical protein PPTG_01539 [Phytophthora parasitica INRA-310] >gi|570326017|gb|ETO73965.1| hypothetical protein F444_10154 [Phytophthora parasitica P1976])

HSP 1 Score: 74.3294 bits (181), Expect = 8.850e-12
Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 0
Query:    1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPK--KTDDGLPKNGLYAYFVRAGHGGY--KKW 60
            MED+++ RLHD L KLRP GK GGLGF S  G K  K  DGLP NGLY+ FVR G G Y  K W
Sbjct:    1 MEDEKLIRLHDMLSKLRPGGKKGGLGFASIGGRKGAKRSDGLPNNGLYSMFVRQGEGTYQHKHW 64          
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|567959725|gb|ETK85293.1| (hypothetical protein L915_09850 [Phytophthora parasitica] >gi|567988435|gb|ETL38713.1| hypothetical protein L916_09757 [Phytophthora parasitica] >gi|570949884|gb|ETP15141.1| hypothetical protein F441_09999 [Phytophthora parasitica CJ01A1] >gi|570983395|gb|ETP43236.1| hypothetical protein F442_09964 [Phytophthora parasitica P10297] >gi|970619199|gb|KUF67238.1| hypothetical protein AM587_10014796 [Phytophthora nicotianae])

HSP 1 Score: 74.3294 bits (181), Expect = 8.937e-12
Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 0
Query:    1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPK--KTDDGLPKNGLYAYFVRAGHGGY--KKW 60
            MED+++ RLHD L KLRP GK GGLGF S  G K  K  DGLP NGLY+ FVR G G Y  K W
Sbjct:    1 MEDEKLIRLHDMLSKLRPGGKKGGLGFASIGGRKGAKRSDGLPNNGLYSMFVRQGEGTYQHKHW 64          
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|970658610|gb|KUF96352.1| (hypothetical protein AM588_10007647 [Phytophthora nicotianae])

HSP 1 Score: 73.559 bits (179), Expect = 1.674e-11
Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 0
Query:    1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPK--KTDDGLPKNGLYAYFVRAGHGGY--KKW 60
            MED+++ RLHD L KLRP GK GGLGF S  G K  K  DGLP NGLY+ FVR G G Y  K W
Sbjct:    1 MEDEKLIRLHDMLSKLRPGGKKGGLGFASIGGRKGAKRSDGLPNNGLYSMFVRQGEGTYQHKHW 64          
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|298707051|emb|CBJ29853.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.0998 bits (183), Expect = 2.603e-11
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 0
Query:    1 MEDDRMQRLHDTLDKLRPRGKTGGLG----FNSGFGPKKTDDGLPKNGLYAYFVRAGH 54
            MED ++QRLHDTL KL P+G  GGLG       GF  K+ D+GLPKNGLY+YFV+ GH
Sbjct:    1 MEDSKLQRLHDTLKKLAPKGNHGGLGSAGLVKGGF--KQRDNGLPKNGLYSYFVKPGH 56          
The following BLAST results are available for this feature:
BLAST of EWM25012.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106647|gb|EWM25012.1|0.000e+0100.00hypothetical protein Naga_100068g10 [Nannochlorops... [more]
gi|553177723|ref|XP_005852491.1|0.000e+097.53hypothetical protein NGA_0337902 [Nannochloropsis ... [more]
gi|1214705839|gb|OWZ17475.1|1.326e-1260.94hypothetical protein PHMEG_0008578 [Phytophthora m... [more]
gi|301120340|ref|XP_002907897.1|3.626e-1260.94conserved hypothetical protein [Phytophthora infes... [more]
gi|953503740|emb|CEG35306.1|5.789e-1256.16hypothetical protein PHALS_09432 [Plasmopara halst... [more]
gi|325183047|emb|CCA17502.1|7.899e-1250.00AlNc14C36G3171 [Albugo laibachii Nc14][more]
gi|675168459|ref|XP_008893114.1|8.850e-1260.94hypothetical protein PPTG_01539 [Phytophthora para... [more]
gi|567959725|gb|ETK85293.1|8.937e-1260.94hypothetical protein L915_09850 [Phytophthora para... [more]
gi|970658610|gb|KUF96352.1|1.674e-1160.94hypothetical protein AM588_10007647 [Phytophthora ... [more]
gi|298707051|emb|CBJ29853.1|2.603e-1160.34expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5675rna5675Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications