EWM25012.1, cds5660 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|585106647|gb|EWM25012.1| (hypothetical protein Naga_100068g10 [Nannochloropsis gaditana]) HSP 1 Score: 728.013 bits (1878), Expect = 0.000e+0 Identity = 364/364 (100.00%), Postives = 364/364 (100.00%), Query Frame = 0
Query: 1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPKKTDDGLPKNGLYAYFVRAGHGGYKKWGDDDIAEVKPESEGESSLPVRGYIKKEKRKKEKRSKGEDASKKRKDILLTASEKQEGGEPPRKRRRQRLEEAVSWEALQNPQAGDATVAGDIKFSWHKHIKRVLKAAEENKVPLRQLRKQVVALALERTSSRTAKGSVAGTQSKKALKHAFHRAVDTHDLLHVEDGVVHYRNAEKAVGGAAYGRQKHDVVTAAKKGAFAMKGEGGSDTEEQREQKRRKSRSGGNNKSAKAVDRVEIAERKKSLSKAESTERLSTEAAGKDIAFADRAEKKKKKNKKGSALEEEKKKEATSMNEAKKASGKRNKH 364
MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPKKTDDGLPKNGLYAYFVRAGHGGYKKWGDDDIAEVKPESEGESSLPVRGYIKKEKRKKEKRSKGEDASKKRKDILLTASEKQEGGEPPRKRRRQRLEEAVSWEALQNPQAGDATVAGDIKFSWHKHIKRVLKAAEENKVPLRQLRKQVVALALERTSSRTAKGSVAGTQSKKALKHAFHRAVDTHDLLHVEDGVVHYRNAEKAVGGAAYGRQKHDVVTAAKKGAFAMKGEGGSDTEEQREQKRRKSRSGGNNKSAKAVDRVEIAERKKSLSKAESTERLSTEAAGKDIAFADRAEKKKKKNKKGSALEEEKKKEATSMNEAKKASGKRNKH
Sbjct: 1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPKKTDDGLPKNGLYAYFVRAGHGGYKKWGDDDIAEVKPESEGESSLPVRGYIKKEKRKKEKRSKGEDASKKRKDILLTASEKQEGGEPPRKRRRQRLEEAVSWEALQNPQAGDATVAGDIKFSWHKHIKRVLKAAEENKVPLRQLRKQVVALALERTSSRTAKGSVAGTQSKKALKHAFHRAVDTHDLLHVEDGVVHYRNAEKAVGGAAYGRQKHDVVTAAKKGAFAMKGEGGSDTEEQREQKRRKSRSGGNNKSAKAVDRVEIAERKKSLSKAESTERLSTEAAGKDIAFADRAEKKKKKNKKGSALEEEKKKEATSMNEAKKASGKRNKH 364
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|553177723|ref|XP_005852491.1| (hypothetical protein NGA_0337902 [Nannochloropsis gaditana CCMP526] >gi|422296040|gb|EKU23339.1| hypothetical protein NGA_0337902 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 704.901 bits (1818), Expect = 0.000e+0 Identity = 355/364 (97.53%), Postives = 358/364 (98.35%), Query Frame = 0
Query: 1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPKKTDDGLPKNGLYAYFVRAGHGGYKKWGDDDIAEVKPESEGESSLPVRGYIKKEKRKKEKRSKGEDASKKRKDILLTASEKQEGGEPPRKRRRQRLEEAVSWEALQNPQAGDATVAGDIKFSWHKHIKRVLKAAEENKVPLRQLRKQVVALALERTSSRTAKGSVAGTQSKKALKHAFHRAVDTHDLLHVEDGVVHYRNAEKAVGGAAYGRQKHDVVTAAKKGAFAMKGEGGSDTEEQREQKRRKSRSGGNNKSAKAVDRVEIAERKKSLSKAESTERLSTEAAGKDIAFADRAEKKKKKNKKGSALEEEKKKEATSMNEAKKASGKRNKH 364
MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPKKTDDGLPKNGLYAYFVRAGHGGYKKWGDDDIAEVKPESEGESSLPVRGYIKKEKRKKEKRSKGEDASKKRKDILLTASEKQEGGEPPRKRRRQRLEEA SWEALQNPQAGDATVAGDIKFSWHKHIKR LKAAEE KVPLRQLRKQVVALALERTSSRTAKGSVAGTQSKKALKHAFHRAVDTHDLLHVEDGVVHYRNAEKAVGG AYGRQKHDVVTAAKKGAFAMKGEGGSDTEEQREQKRRKSRSGGNNKSAKAVDRVE+AERKKSLSKA+STER STEAAGKDIAFADRAEKKKKKNKKGSALEEEK+KEATSM EAKKASGKRNKH
Sbjct: 1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPKKTDDGLPKNGLYAYFVRAGHGGYKKWGDDDIAEVKPESEGESSLPVRGYIKKEKRKKEKRSKGEDASKKRKDILLTASEKQEGGEPPRKRRRQRLEEAASWEALQNPQAGDATVAGDIKFSWHKHIKRALKAAEE-KVPLRQLRKQVVALALERTSSRTAKGSVAGTQSKKALKHAFHRAVDTHDLLHVEDGVVHYRNAEKAVGGGAYGRQKHDVVTAAKKGAFAMKGEGGSDTEEQREQKRRKSRSGGNNKSAKAVDRVEVAERKKSLSKAKSTERPSTEAAGKDIAFADRAEKKKKKNKKGSALEEEKRKEATSMKEAKKASGKRNKH 363
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|1214705839|gb|OWZ17475.1| (hypothetical protein PHMEG_0008578 [Phytophthora megakarya]) HSP 1 Score: 76.2554 bits (186), Expect = 1.326e-12 Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 0
Query: 1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPK--KTDDGLPKNGLYAYFVRAGHGGY--KKW 60
MED+++ RLHD L KLRP GK GGLGF S G K K DGLP NGLY+ FVR G G Y K W
Sbjct: 1 MEDEKLIRLHDMLSKLRPGGKKGGLGFASVGGRKSAKRSDGLPNNGLYSMFVRQGEGTYQHKHW 64
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|301120340|ref|XP_002907897.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102928|gb|EEY60980.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 75.485 bits (184), Expect = 3.626e-12 Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 0
Query: 1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPK--KTDDGLPKNGLYAYFVRAGHGGY--KKW 60
MED+++ RLHD L KLRP GK GGLGF S G K K DGLP NGLY+ FVR G G Y K W
Sbjct: 1 MEDEKLIRLHDMLSKLRPGGKKGGLGFASIGGRKGAKRSDGLPNNGLYSMFVRQGEGTYQHKHW 64
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|953503740|emb|CEG35306.1| (hypothetical protein PHALS_09432 [Plasmopara halstedii]) HSP 1 Score: 73.1738 bits (178), Expect = 5.789e-12 Identity = 41/73 (56.16%), Postives = 48/73 (65.75%), Query Frame = 0
Query: 1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPK--KTDDGLPKNGLYAYFVRAGHGGY--KKW--GDDDIAE 67
ME++++ RLHD L KLRP GK GGLGF S G K K DGLP NGLY+ FVR G G Y K W +DD A+
Sbjct: 1 MEEEKLIRLHDMLAKLRPGGKKGGLGFASIGGRKGVKRSDGLPNNGLYSMFVRQGEGSYQHKHWEENEDDEAD 73
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|325183047|emb|CCA17502.1| (AlNc14C36G3171 [Albugo laibachii Nc14]) HSP 1 Score: 73.9442 bits (180), Expect = 7.899e-12 Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 0
Query: 1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNS---GFGPKKTDDGLPKNGLYAYFVRAGHGGY-KKWGDDDIAEVKP 70
MED+++ +LHD L +LRP GK GGLGF++ G G DGLP NGLYA FVR GH + + +DDI + P
Sbjct: 1 MEDEKLVQLHDVLSRLRPGGKKGGLGFSNLTLGNGKSGRTDGLPDNGLYAMFVREGHNAHIHQRFEDDIDDNAP 74
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|675168459|ref|XP_008893114.1| (hypothetical protein PPTG_01539 [Phytophthora parasitica INRA-310] >gi|566022412|gb|ETI45323.1| hypothetical protein F443_10056 [Phytophthora parasitica P1569] >gi|568017665|gb|ETL91842.1| hypothetical protein L917_09678 [Phytophthora parasitica] >gi|568048050|gb|ETM45117.1| hypothetical protein L914_09726 [Phytophthora parasitica] >gi|568106682|gb|ETN21312.1| hypothetical protein PPTG_01539 [Phytophthora parasitica INRA-310] >gi|570326017|gb|ETO73965.1| hypothetical protein F444_10154 [Phytophthora parasitica P1976]) HSP 1 Score: 74.3294 bits (181), Expect = 8.850e-12 Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 0
Query: 1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPK--KTDDGLPKNGLYAYFVRAGHGGY--KKW 60
MED+++ RLHD L KLRP GK GGLGF S G K K DGLP NGLY+ FVR G G Y K W
Sbjct: 1 MEDEKLIRLHDMLSKLRPGGKKGGLGFASIGGRKGAKRSDGLPNNGLYSMFVRQGEGTYQHKHW 64
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|567959725|gb|ETK85293.1| (hypothetical protein L915_09850 [Phytophthora parasitica] >gi|567988435|gb|ETL38713.1| hypothetical protein L916_09757 [Phytophthora parasitica] >gi|570949884|gb|ETP15141.1| hypothetical protein F441_09999 [Phytophthora parasitica CJ01A1] >gi|570983395|gb|ETP43236.1| hypothetical protein F442_09964 [Phytophthora parasitica P10297] >gi|970619199|gb|KUF67238.1| hypothetical protein AM587_10014796 [Phytophthora nicotianae]) HSP 1 Score: 74.3294 bits (181), Expect = 8.937e-12 Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 0
Query: 1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPK--KTDDGLPKNGLYAYFVRAGHGGY--KKW 60
MED+++ RLHD L KLRP GK GGLGF S G K K DGLP NGLY+ FVR G G Y K W
Sbjct: 1 MEDEKLIRLHDMLSKLRPGGKKGGLGFASIGGRKGAKRSDGLPNNGLYSMFVRQGEGTYQHKHW 64
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|970658610|gb|KUF96352.1| (hypothetical protein AM588_10007647 [Phytophthora nicotianae]) HSP 1 Score: 73.559 bits (179), Expect = 1.674e-11 Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 0
Query: 1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPK--KTDDGLPKNGLYAYFVRAGHGGY--KKW 60
MED+++ RLHD L KLRP GK GGLGF S G K K DGLP NGLY+ FVR G G Y K W
Sbjct: 1 MEDEKLIRLHDMLSKLRPGGKKGGLGFASIGGRKGAKRSDGLPNNGLYSMFVRQGEGTYQHKHW 64
BLAST of EWM25012.1 vs. NCBI_GenBank
Match: gi|298707051|emb|CBJ29853.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 75.0998 bits (183), Expect = 2.603e-11 Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 0
Query: 1 MEDDRMQRLHDTLDKLRPRGKTGGLG----FNSGFGPKKTDDGLPKNGLYAYFVRAGH 54
MED ++QRLHDTL KL P+G GGLG GF K+ D+GLPKNGLY+YFV+ GH
Sbjct: 1 MEDSKLQRLHDTLKKLAPKGNHGGLGSAGLVKGGF--KQRDNGLPKNGLYSYFVKPGH 56 The following BLAST results are available for this feature:
BLAST of EWM25012.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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