EWM30109.1, cds566 (CDS) Nannochloropsis gaditana

Overview
NameEWM30109.1
Unique Namecds566
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1401320..1402054 -
Alignment locationCM002455.1:1400509..1401051 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30109.1
Producttpr-repeat protein
Orig transcript idgnl|cribi|Naga_100310g7.1344.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1401320..1402054 -
CM002455.1supercontigCM002455.1:1400509..1401051 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR001440TPR_1
IPR011990TPR-like_helical_dom
IPR019734TPR_repeat
Homology
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|585112754|gb|EWM30109.1| (tpr-repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 874.004 bits (2257), Expect = 0.000e+0
Identity = 425/425 (100.00%), Postives = 425/425 (100.00%), Query Frame = 0
Query:    1 MHYPRPHHVNSHQIIMPWSRRRRTSLKRRPYLVLVLASSMLVSKSGAFQHHGVLRTSGVTTLPSESSSRVITPKAPSALLSCAQQDVQTKKRPFYSRLEVFNALSTGNVHQAFVKISILLLGSSFADPFLLSPLPAMAADPSRAQIQQVQRAFQAFNDRDLRNAEALFDQSVQAWEQLERPRDEMAALVKARGNVKVDLKKFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASYRDLDFVQRIRRWPPSLVKKLEGFLAKSKVVAGGGSSVLR 425
            MHYPRPHHVNSHQIIMPWSRRRRTSLKRRPYLVLVLASSMLVSKSGAFQHHGVLRTSGVTTLPSESSSRVITPKAPSALLSCAQQDVQTKKRPFYSRLEVFNALSTGNVHQAFVKISILLLGSSFADPFLLSPLPAMAADPSRAQIQQVQRAFQAFNDRDLRNAEALFDQSVQAWEQLERPRDEMAALVKARGNVKVDLKKFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASYRDLDFVQRIRRWPPSLVKKLEGFLAKSKVVAGGGSSVLR
Sbjct:    1 MHYPRPHHVNSHQIIMPWSRRRRTSLKRRPYLVLVLASSMLVSKSGAFQHHGVLRTSGVTTLPSESSSRVITPKAPSALLSCAQQDVQTKKRPFYSRLEVFNALSTGNVHQAFVKISILLLGSSFADPFLLSPLPAMAADPSRAQIQQVQRAFQAFNDRDLRNAEALFDQSVQAWEQLERPRDEMAALVKARGNVKVDLKKFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASYRDLDFVQRIRRWPPSLVKKLEGFLAKSKVVAGGGSSVLR 425          
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|873240702|emb|CEL93194.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 306.99 bits (785), Expect = 8.900e-98
Identity = 149/280 (53.21%), Postives = 193/280 (68.93%), Query Frame = 0
Query:  136 AMAADPSRAQIQQVQRAFQAFNDRDLRNAEALFDQSVQAWEQLERP-----RDEMAALVKARGNVKVDLKKFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASYRDLDFVQRIRRWPPSLVKKLEGFL 410
            A + +PS   IQ VQ AF+ F+ +D   A+  F +++  WE L R      RDE+A L K RGNV+VD K+F   +ED++R + +M  DG   +  G A Y EYPD FVQRGL +EGL+ W+AAV+DYS+AI LWGGGRGEGINPFVL FR NAL+RLG Y DAL D++A+ DLFL+ RD+  A  ARAN AL  YE G  +  VK+M+ ++RRQP + D+HVALAAHA+ E +L  A KEW+FAC +  +GC  Y  LD+V  IRRWPPSLV +L  F+
Sbjct:   94 ASSLEPSSKDIQTVQEAFKYFDAKDFDRADRFFSRAIDKWESLYRGGRKGGRDELATLYKVRGNVRVDSKRFAEGLEDYNRAIDLMKTDGE--NDQGIARYQEYPDAFVQRGLTYEGLADWDAAVKDYSKAISLWGGGRGEGINPFVLVFRANALSRLGNYDDALVDYKAADDLFLSLRDDARATDARANFALALYETGRRDDAVKVMRQIVRRQPAYTDMHVALAAHAYSENDLPGALKEWQFACTRIESGCRRYTQLDWVSEIRRWPPSLVSELRSFI 371          
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|551670523|ref|XP_005838019.1| (hypothetical protein GUITHDRAFT_66103, partial [Guillardia theta CCMP2712] >gi|428182178|gb|EKX51039.1| hypothetical protein GUITHDRAFT_66103, partial [Guillardia theta CCMP2712])

HSP 1 Score: 198.749 bits (504), Expect = 2.502e-58
Identity = 103/195 (52.82%), Postives = 128/195 (65.64%), Query Frame = 0
Query:  226 SGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLAS-RDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQ-PGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASY------RDLDFVQRIRRWPPSLVKKLEGFLAK 412
            +G+A Y EYPD FVQRGL  EGL  WE A+QDYSRAIQLWGGGR +G+NP+VLTFR NAL +LG+Y +AL D+EAS  LF+A  RDE  AL  RAN AL  Y+       +     +   Q  G+ D+HVALAA AW  G+   AE EW FAC +  TGC+ Y      RDLD++  +RRWPP++V  +  FL K
Sbjct:    4 NGKAIYMEYPDTFVQRGLCSEGLGNWEDAIQDYSRAIQLWGGGREQGVNPYVLTFRANALAKLGKYNEALVDYEASDRLFVAVLRDEARALDVRANYALALYQADDLRLTMFTADPLHHLQLSGYTDMHVALAAIAWSAGDRETAESEWEFACNKIQTGCSLYRQSLISRDLDWLSTVRRWPPAMVANMALFLGK 198          
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|1129175766|gb|OLP84463.1| (hypothetical protein AK812_SmicGene34660 [Symbiodinium microadriaticum])

HSP 1 Score: 192.2 bits (487), Expect = 2.168e-50
Identity = 102/265 (38.49%), Postives = 147/265 (55.47%), Query Frame = 0
Query:  168 FDQSVQAWEQLERPRDEMAALVKARGNVKVDLK---------KFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLS-------KWEAAVQDYSRAIQLW----GGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASYRDLDFVQRIRRWPPSLVKKLEGFLAK 412
            F   +Q +++    R +   L  AR   ++ +          K EAA++D+  V+ +M  DG  T         +YP VFV+R LA E ++       +WEAAVQDY++AI  W        G G+NP VL +RGNA  +LGR+KDAL D+  + ++F+  ++   A L+R N AL  + +      + +M+DV+RR P   D H+ALAA  W EG+  RAE EWR AC+ T  GC  Y+DL +V+ IRRWPP LV  L  FL +
Sbjct:  540 FTTVIQRFDEAGASRQDRGELRMARAQARIAINDCTGGQLPAKAEAAVQDYSDVVQLMEEDGAAT------GTFDYPSVFVRRALAREEIAYGRKDKKQWEAAVQDYTKAIDTWRSRPPSETGLGVNPLVLNYRGNAFGQLGRFKDALADYREATEIFIKDQEYTQAALSRCNEALALFGISEPIEAISIMEDVVRRDPSIADAHIALAASYWSEGDYSRAEDEWRVACQNTDVGCRQYKDLSWVENIRRWPPQLVGDLGRFLNR 798          
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|551597956|ref|XP_005781052.1| (hypothetical protein EMIHUDRAFT_73062 [Emiliania huxleyi CCMP1516] >gi|485633763|gb|EOD28623.1| hypothetical protein EMIHUDRAFT_73062 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 172.17 bits (435), Expect = 6.110e-48
Identity = 89/203 (43.84%), Postives = 126/203 (62.07%), Query Frame = 0
Query:  216 MSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLF-LASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASYRDLD---FVQRIRRWPPSLVKKLEGFLAKSK 414
            M   G K++G G  AY EYPD FVQRGLA EGL  W  A+ DY +A+ LWGG  G+G+NP+ LT+R  A   +G Y+ AL D+  ++ +F    ++ E +  ARA  A+T Y L   +  V++ + V+ R PG  D+HV LAA AW  G+  +A KEW FAC+  +TGCA YRD+    ++  +RRWP  LV++   FL +S+
Sbjct:    1 MRPTGEKSNGLG--AYREYPDAFVQRGLANEGLRDWRGALSDYDKAVSLWGGA-GDGVNPYTLTYRARARAEVGDYEGALSDYRGASSIFSRVDKNVEQSSFARAGEAVTLYALDRRDEAVRVARQVVTRFPGLTDLHVLLAADAWDRGDREKAIKEWSFACDAISTGCAKYRDVKEGGWLVEVRRWPAPLVQRQRTFLEESQ 200          
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|551618005|ref|XP_005789820.1| (hypothetical protein EMIHUDRAFT_70534 [Emiliania huxleyi CCMP1516] >gi|485643376|gb|EOD37391.1| hypothetical protein EMIHUDRAFT_70534 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 172.17 bits (435), Expect = 6.674e-48
Identity = 89/203 (43.84%), Postives = 126/203 (62.07%), Query Frame = 0
Query:  216 MSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLF-LASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASYRDLD---FVQRIRRWPPSLVKKLEGFLAKSK 414
            M   G K++G G  AY EYPD FVQRGLA EGL  W  A+ DY +A+ LWGG  G+G+NP+ LT+R  A   +G Y+ AL D+  ++ +F    ++ E +  ARA  A+T Y L   +  V++ + V+ R PG  D+HV LAA AW  G+  +A KEW FAC+  +TGCA YRD+    ++  +RRWP  LV++   FL +S+
Sbjct:    1 MRPTGEKSNGLG--AYREYPDAFVQRGLANEGLRDWRGALSDYDKAVSLWGGA-GDGVNPYTLTYRARARAEVGDYEGALSDYRGASSIFSRVDKNVEQSSFARAGEAVTLYALDRRDEAVRVARQVVTRFPGLTDLHVLLAADAWDRGDREKAIKEWSFACDAISTGCAKYRDVKEGGWLVEVRRWPAPLVQRQRTFLEESQ 200          
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|255081562|ref|XP_002508003.1| (predicted protein [Micromonas commoda] >gi|226523279|gb|ACO69261.1| predicted protein [Micromonas commoda])

HSP 1 Score: 169.088 bits (427), Expect = 1.919e-46
Identity = 98/230 (42.61%), Postives = 130/230 (56.52%), Query Frame = 0
Query:  192 RGNVKVDLKKFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTT-----------GCASYRDLDFVQRIRRWPPSLVKKLEGFL 410
            R  V VDLK+F+AAIEDFD    +   D  K+ G           +   R LA EGLS W  AV+DY+  I L       G+ P+VL  RGNAL+ LGRY +AL D+E +A  F    +   A+ AR+NAALT  ELG +E  +  M+ V RR  G +D+  ALAA  W  G    AE++W +ACE+  +           GCA YRD D++ RIRRWPPS+V K++ F+
Sbjct:   12 RAQVLVDLKQFQAAIEDFDAAEGLYDKD-YKSLG-----------LLSNRALAREGLSDWSGAVRDYTECINL--SREIGGVPPYVLNSRGNALSSLGRYDEALGDYEEAAKTFQVMHNLSGAIYARSNAALTLAELGRDEEAIHEMEAVARRAAGSIDMRAALAAMHWSRGEEDEAERDWNWACEKINSGVLTEGGPALDGCALYRDSDWLGRIRRWPPSMVSKMDDFI 227          
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|971510144|dbj|GAQ88058.1| (hypothetical protein KFL_003970050 [Klebsormidium nitens])

HSP 1 Score: 166.007 bits (419), Expect = 2.275e-44
Identity = 105/256 (41.02%), Postives = 144/256 (56.25%), Query Frame = 0
Query:  161 LRNAEALFDQSVQAWEQLERPRDEMAALVKARGNVKVDLKKFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGIN-PFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACE-----QTTTGCASYRDLDFVQRIRRWPPSLVKKLEGFL 410
            L  A  LFD+ V     LE  R E     +ARG ++VD KKF  A++DF+ VL        + + S    YS        R LA+EGLS W+ AV DY+ A++L  G +  G + P+VL  RGNA   LG++ +AL+D+E S   F   R  + A+ + ANAAL   +LG E+ G+K +  V RR PG +D+  ALAA  W +G    AE  W+FACE     Q   GCA YRD D+++RIRRWPP +  K++ F 
Sbjct:   72 LAEACTLFDKLVA----LEPERTEWR---EARGQLRVDSKKFNEALDDFNYVL--------EKNPSNFRGYS-------SRALAYEGLSYWDKAVDDYTTALRL--GKKATGFDEPYVLNSRGNAFASLGQWSEALRDYELSVKGFQEGRQLDGAIYSAANAALMQIQLGNEKEGLKELTTVARRAPGSIDMRAALAALYWSQGREREAESTWQFACENINAGQLYDGCAKYRDQDWLRRIRRWPPVMADKMQDFF 303          
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|302817471|ref|XP_002990411.1| (hypothetical protein SELMODRAFT_428896 [Selaginella moellendorffii] >gi|300141796|gb|EFJ08504.1| hypothetical protein SELMODRAFT_428896 [Selaginella moellendorffii])

HSP 1 Score: 171.4 bits (433), Expect = 1.636e-43
Identity = 101/282 (35.82%), Postives = 156/282 (55.32%), Query Frame = 0
Query:  134 LPAMAADPSRAQIQQVQRAFQAFNDRDLRNAEALFDQSVQAWEQLERPRDEMAALVKARGNVKVDLKKFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTT-----GCASYRDLDFVQRIRRWPPSLVKKLEGFL 410
            + A +A   RA +Q+ Q  +    D +  +  +  D++ + ++++        A ++ RG V+VD K+FE A+ DFD  +                   E    +  R LA+EGL++W  AV DY+ A+Q      G   +P+V+  RGNAL  LGRYK+AL+D+ AS D F  +R+ + A+ ARANAAL   ++G E  G++ +  V RR PG +D+  ALAA  W  G    AE EW FACE+  +     GC  Y+D D+++RIRRWPP +++ ++ FL
Sbjct:  206 IEAGSAAGVRALVQEAQEEWGRGLDPENPDRASSLDRACRIFDRIVAMDPARTAWLEGRGQVRVDAKRFEEAVADFDEAIR---------------RQPENYRAYSGRALAFEGLAQWSNAVADYTEALQRGRAATGY-RDPYVMNSRGNALASLGRYKEALRDYSASFDAFQDARELDGAIYARANAALMRIQVGDEANGLRELLAVARRAPGSIDMRAALAAVYWSMGRANEAEDEWEFACEKINSGRLFDGCERYKDTDWLKRIRRWPPVMIQHMDDFL 471          
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|302812259|ref|XP_002987817.1| (hypothetical protein SELMODRAFT_447134 [Selaginella moellendorffii] >gi|300144436|gb|EFJ11120.1| hypothetical protein SELMODRAFT_447134 [Selaginella moellendorffii])

HSP 1 Score: 170.244 bits (430), Expect = 3.428e-43
Identity = 103/282 (36.52%), Postives = 157/282 (55.67%), Query Frame = 0
Query:  134 LPAMAADPSRAQIQQVQRAFQAFNDRDLRNAEALFDQSVQAWEQLERPRDEMAALVKARGNVKVDLKKFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTT-----GCASYRDLDFVQRIRRWPPSLVKKLEGFL 410
            + A +A   RA +Q+ Q  +    D +  +     D++ + ++++        A ++ RG V+VD K+FE A+ DFD  +        +       AYS        R LA+EGL++W  AV DY+ A+Q      G   +P+V+  RGNAL  LGRYK+AL+D+ AS D F  +R+ + A+ A+ANAAL   ++G E  G+K +  V RR PG +D+  ALAA  W  G    AE EW FACE+  +     GC  Y+D D+++RIRRWPP +++ ++ FL
Sbjct:  185 IEAGSAAGIRALVQEAQEEWGRGLDPENPDRATSLDRACRIFDRIVAMDPARTAWLEGRGQVRVDAKRFEEAVADFDEAI--------RRQPGNYRAYS-------GRALAFEGLAQWSNAVADYTEALQRGRAATGY-RDPYVMNSRGNALASLGRYKEALRDYSASFDAFQDARELDGAIYAKANAALMRIQVGDEANGLKELLAVARRAPGSIDMRAALAAVYWSMGRANEAEDEWEFACEKINSGRLFDGCERYKDTDWLKRIRRWPPVMIQHMDDFL 450          
The following BLAST results are available for this feature:
BLAST of EWM30109.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112754|gb|EWM30109.1|0.000e+0100.00tpr-repeat protein [Nannochloropsis gaditana][more]
gi|873240702|emb|CEL93194.1|8.900e-9853.21unnamed protein product [Vitrella brassicaformis C... [more]
gi|551670523|ref|XP_005838019.1|2.502e-5852.82hypothetical protein GUITHDRAFT_66103, partial [Gu... [more]
gi|1129175766|gb|OLP84463.1|2.168e-5038.49hypothetical protein AK812_SmicGene34660 [Symbiodi... [more]
gi|551597956|ref|XP_005781052.1|6.110e-4843.84hypothetical protein EMIHUDRAFT_73062 [Emiliania h... [more]
gi|551618005|ref|XP_005789820.1|6.674e-4843.84hypothetical protein EMIHUDRAFT_70534 [Emiliania h... [more]
gi|255081562|ref|XP_002508003.1|1.919e-4642.61predicted protein [Micromonas commoda] >gi|2265232... [more]
gi|971510144|dbj|GAQ88058.1|2.275e-4441.02hypothetical protein KFL_003970050 [Klebsormidium ... [more]
gi|302817471|ref|XP_002990411.1|1.636e-4335.82hypothetical protein SELMODRAFT_428896 [Selaginell... [more]
gi|302812259|ref|XP_002987817.1|3.428e-4336.52hypothetical protein SELMODRAFT_447134 [Selaginell... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna566rna566Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications