EWM30109.1, cds566 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|585112754|gb|EWM30109.1| (tpr-repeat protein [Nannochloropsis gaditana]) HSP 1 Score: 874.004 bits (2257), Expect = 0.000e+0 Identity = 425/425 (100.00%), Postives = 425/425 (100.00%), Query Frame = 0 Query: 1 MHYPRPHHVNSHQIIMPWSRRRRTSLKRRPYLVLVLASSMLVSKSGAFQHHGVLRTSGVTTLPSESSSRVITPKAPSALLSCAQQDVQTKKRPFYSRLEVFNALSTGNVHQAFVKISILLLGSSFADPFLLSPLPAMAADPSRAQIQQVQRAFQAFNDRDLRNAEALFDQSVQAWEQLERPRDEMAALVKARGNVKVDLKKFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASYRDLDFVQRIRRWPPSLVKKLEGFLAKSKVVAGGGSSVLR 425 MHYPRPHHVNSHQIIMPWSRRRRTSLKRRPYLVLVLASSMLVSKSGAFQHHGVLRTSGVTTLPSESSSRVITPKAPSALLSCAQQDVQTKKRPFYSRLEVFNALSTGNVHQAFVKISILLLGSSFADPFLLSPLPAMAADPSRAQIQQVQRAFQAFNDRDLRNAEALFDQSVQAWEQLERPRDEMAALVKARGNVKVDLKKFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASYRDLDFVQRIRRWPPSLVKKLEGFLAKSKVVAGGGSSVLR Sbjct: 1 MHYPRPHHVNSHQIIMPWSRRRRTSLKRRPYLVLVLASSMLVSKSGAFQHHGVLRTSGVTTLPSESSSRVITPKAPSALLSCAQQDVQTKKRPFYSRLEVFNALSTGNVHQAFVKISILLLGSSFADPFLLSPLPAMAADPSRAQIQQVQRAFQAFNDRDLRNAEALFDQSVQAWEQLERPRDEMAALVKARGNVKVDLKKFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASYRDLDFVQRIRRWPPSLVKKLEGFLAKSKVVAGGGSSVLR 425
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|873240702|emb|CEL93194.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 306.99 bits (785), Expect = 8.900e-98 Identity = 149/280 (53.21%), Postives = 193/280 (68.93%), Query Frame = 0 Query: 136 AMAADPSRAQIQQVQRAFQAFNDRDLRNAEALFDQSVQAWEQLERP-----RDEMAALVKARGNVKVDLKKFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASYRDLDFVQRIRRWPPSLVKKLEGFL 410 A + +PS IQ VQ AF+ F+ +D A+ F +++ WE L R RDE+A L K RGNV+VD K+F +ED++R + +M DG + G A Y EYPD FVQRGL +EGL+ W+AAV+DYS+AI LWGGGRGEGINPFVL FR NAL+RLG Y DAL D++A+ DLFL+ RD+ A ARAN AL YE G + VK+M+ ++RRQP + D+HVALAAHA+ E +L A KEW+FAC + +GC Y LD+V IRRWPPSLV +L F+ Sbjct: 94 ASSLEPSSKDIQTVQEAFKYFDAKDFDRADRFFSRAIDKWESLYRGGRKGGRDELATLYKVRGNVRVDSKRFAEGLEDYNRAIDLMKTDGE--NDQGIARYQEYPDAFVQRGLTYEGLADWDAAVKDYSKAISLWGGGRGEGINPFVLVFRANALSRLGNYDDALVDYKAADDLFLSLRDDARATDARANFALALYETGRRDDAVKVMRQIVRRQPAYTDMHVALAAHAYSENDLPGALKEWQFACTRIESGCRRYTQLDWVSEIRRWPPSLVSELRSFI 371
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|551670523|ref|XP_005838019.1| (hypothetical protein GUITHDRAFT_66103, partial [Guillardia theta CCMP2712] >gi|428182178|gb|EKX51039.1| hypothetical protein GUITHDRAFT_66103, partial [Guillardia theta CCMP2712]) HSP 1 Score: 198.749 bits (504), Expect = 2.502e-58 Identity = 103/195 (52.82%), Postives = 128/195 (65.64%), Query Frame = 0 Query: 226 SGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLAS-RDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQ-PGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASY------RDLDFVQRIRRWPPSLVKKLEGFLAK 412 +G+A Y EYPD FVQRGL EGL WE A+QDYSRAIQLWGGGR +G+NP+VLTFR NAL +LG+Y +AL D+EAS LF+A RDE AL RAN AL Y+ + + Q G+ D+HVALAA AW G+ AE EW FAC + TGC+ Y RDLD++ +RRWPP++V + FL K Sbjct: 4 NGKAIYMEYPDTFVQRGLCSEGLGNWEDAIQDYSRAIQLWGGGREQGVNPYVLTFRANALAKLGKYNEALVDYEASDRLFVAVLRDEARALDVRANYALALYQADDLRLTMFTADPLHHLQLSGYTDMHVALAAIAWSAGDRETAESEWEFACNKIQTGCSLYRQSLISRDLDWLSTVRRWPPAMVANMALFLGK 198
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|1129175766|gb|OLP84463.1| (hypothetical protein AK812_SmicGene34660 [Symbiodinium microadriaticum]) HSP 1 Score: 192.2 bits (487), Expect = 2.168e-50 Identity = 102/265 (38.49%), Postives = 147/265 (55.47%), Query Frame = 0 Query: 168 FDQSVQAWEQLERPRDEMAALVKARGNVKVDLK---------KFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLS-------KWEAAVQDYSRAIQLW----GGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASYRDLDFVQRIRRWPPSLVKKLEGFLAK 412 F +Q +++ R + L AR ++ + K EAA++D+ V+ +M DG T +YP VFV+R LA E ++ +WEAAVQDY++AI W G G+NP VL +RGNA +LGR+KDAL D+ + ++F+ ++ A L+R N AL + + + +M+DV+RR P D H+ALAA W EG+ RAE EWR AC+ T GC Y+DL +V+ IRRWPP LV L FL + Sbjct: 540 FTTVIQRFDEAGASRQDRGELRMARAQARIAINDCTGGQLPAKAEAAVQDYSDVVQLMEEDGAAT------GTFDYPSVFVRRALAREEIAYGRKDKKQWEAAVQDYTKAIDTWRSRPPSETGLGVNPLVLNYRGNAFGQLGRFKDALADYREATEIFIKDQEYTQAALSRCNEALALFGISEPIEAISIMEDVVRRDPSIADAHIALAASYWSEGDYSRAEDEWRVACQNTDVGCRQYKDLSWVENIRRWPPQLVGDLGRFLNR 798
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|551597956|ref|XP_005781052.1| (hypothetical protein EMIHUDRAFT_73062 [Emiliania huxleyi CCMP1516] >gi|485633763|gb|EOD28623.1| hypothetical protein EMIHUDRAFT_73062 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 172.17 bits (435), Expect = 6.110e-48 Identity = 89/203 (43.84%), Postives = 126/203 (62.07%), Query Frame = 0 Query: 216 MSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLF-LASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASYRDLD---FVQRIRRWPPSLVKKLEGFLAKSK 414 M G K++G G AY EYPD FVQRGLA EGL W A+ DY +A+ LWGG G+G+NP+ LT+R A +G Y+ AL D+ ++ +F ++ E + ARA A+T Y L + V++ + V+ R PG D+HV LAA AW G+ +A KEW FAC+ +TGCA YRD+ ++ +RRWP LV++ FL +S+ Sbjct: 1 MRPTGEKSNGLG--AYREYPDAFVQRGLANEGLRDWRGALSDYDKAVSLWGGA-GDGVNPYTLTYRARARAEVGDYEGALSDYRGASSIFSRVDKNVEQSSFARAGEAVTLYALDRRDEAVRVARQVVTRFPGLTDLHVLLAADAWDRGDREKAIKEWSFACDAISTGCAKYRDVKEGGWLVEVRRWPAPLVQRQRTFLEESQ 200
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|551618005|ref|XP_005789820.1| (hypothetical protein EMIHUDRAFT_70534 [Emiliania huxleyi CCMP1516] >gi|485643376|gb|EOD37391.1| hypothetical protein EMIHUDRAFT_70534 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 172.17 bits (435), Expect = 6.674e-48 Identity = 89/203 (43.84%), Postives = 126/203 (62.07%), Query Frame = 0 Query: 216 MSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLF-LASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASYRDLD---FVQRIRRWPPSLVKKLEGFLAKSK 414 M G K++G G AY EYPD FVQRGLA EGL W A+ DY +A+ LWGG G+G+NP+ LT+R A +G Y+ AL D+ ++ +F ++ E + ARA A+T Y L + V++ + V+ R PG D+HV LAA AW G+ +A KEW FAC+ +TGCA YRD+ ++ +RRWP LV++ FL +S+ Sbjct: 1 MRPTGEKSNGLG--AYREYPDAFVQRGLANEGLRDWRGALSDYDKAVSLWGGA-GDGVNPYTLTYRARARAEVGDYEGALSDYRGASSIFSRVDKNVEQSSFARAGEAVTLYALDRRDEAVRVARQVVTRFPGLTDLHVLLAADAWDRGDREKAIKEWSFACDAISTGCAKYRDVKEGGWLVEVRRWPAPLVQRQRTFLEESQ 200
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|255081562|ref|XP_002508003.1| (predicted protein [Micromonas commoda] >gi|226523279|gb|ACO69261.1| predicted protein [Micromonas commoda]) HSP 1 Score: 169.088 bits (427), Expect = 1.919e-46 Identity = 98/230 (42.61%), Postives = 130/230 (56.52%), Query Frame = 0 Query: 192 RGNVKVDLKKFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTT-----------GCASYRDLDFVQRIRRWPPSLVKKLEGFL 410 R V VDLK+F+AAIEDFD + D K+ G + R LA EGLS W AV+DY+ I L G+ P+VL RGNAL+ LGRY +AL D+E +A F + A+ AR+NAALT ELG +E + M+ V RR G +D+ ALAA W G AE++W +ACE+ + GCA YRD D++ RIRRWPPS+V K++ F+ Sbjct: 12 RAQVLVDLKQFQAAIEDFDAAEGLYDKD-YKSLG-----------LLSNRALAREGLSDWSGAVRDYTECINL--SREIGGVPPYVLNSRGNALSSLGRYDEALGDYEEAAKTFQVMHNLSGAIYARSNAALTLAELGRDEEAIHEMEAVARRAAGSIDMRAALAAMHWSRGEEDEAERDWNWACEKINSGVLTEGGPALDGCALYRDSDWLGRIRRWPPSMVSKMDDFI 227
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|971510144|dbj|GAQ88058.1| (hypothetical protein KFL_003970050 [Klebsormidium nitens]) HSP 1 Score: 166.007 bits (419), Expect = 2.275e-44 Identity = 105/256 (41.02%), Postives = 144/256 (56.25%), Query Frame = 0 Query: 161 LRNAEALFDQSVQAWEQLERPRDEMAALVKARGNVKVDLKKFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGIN-PFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACE-----QTTTGCASYRDLDFVQRIRRWPPSLVKKLEGFL 410 L A LFD+ V LE R E +ARG ++VD KKF A++DF+ VL + + S YS R LA+EGLS W+ AV DY+ A++L G + G + P+VL RGNA LG++ +AL+D+E S F R + A+ + ANAAL +LG E+ G+K + V RR PG +D+ ALAA W +G AE W+FACE Q GCA YRD D+++RIRRWPP + K++ F Sbjct: 72 LAEACTLFDKLVA----LEPERTEWR---EARGQLRVDSKKFNEALDDFNYVL--------EKNPSNFRGYS-------SRALAYEGLSYWDKAVDDYTTALRL--GKKATGFDEPYVLNSRGNAFASLGQWSEALRDYELSVKGFQEGRQLDGAIYSAANAALMQIQLGNEKEGLKELTTVARRAPGSIDMRAALAALYWSQGREREAESTWQFACENINAGQLYDGCAKYRDQDWLRRIRRWPPVMADKMQDFF 303
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|302817471|ref|XP_002990411.1| (hypothetical protein SELMODRAFT_428896 [Selaginella moellendorffii] >gi|300141796|gb|EFJ08504.1| hypothetical protein SELMODRAFT_428896 [Selaginella moellendorffii]) HSP 1 Score: 171.4 bits (433), Expect = 1.636e-43 Identity = 101/282 (35.82%), Postives = 156/282 (55.32%), Query Frame = 0 Query: 134 LPAMAADPSRAQIQQVQRAFQAFNDRDLRNAEALFDQSVQAWEQLERPRDEMAALVKARGNVKVDLKKFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTT-----GCASYRDLDFVQRIRRWPPSLVKKLEGFL 410 + A +A RA +Q+ Q + D + + + D++ + ++++ A ++ RG V+VD K+FE A+ DFD + E + R LA+EGL++W AV DY+ A+Q G +P+V+ RGNAL LGRYK+AL+D+ AS D F +R+ + A+ ARANAAL ++G E G++ + V RR PG +D+ ALAA W G AE EW FACE+ + GC Y+D D+++RIRRWPP +++ ++ FL Sbjct: 206 IEAGSAAGVRALVQEAQEEWGRGLDPENPDRASSLDRACRIFDRIVAMDPARTAWLEGRGQVRVDAKRFEEAVADFDEAIR---------------RQPENYRAYSGRALAFEGLAQWSNAVADYTEALQRGRAATGY-RDPYVMNSRGNALASLGRYKEALRDYSASFDAFQDARELDGAIYARANAALMRIQVGDEANGLRELLAVARRAPGSIDMRAALAAVYWSMGRANEAEDEWEFACEKINSGRLFDGCERYKDTDWLKRIRRWPPVMIQHMDDFL 471
BLAST of EWM30109.1 vs. NCBI_GenBank
Match: gi|302812259|ref|XP_002987817.1| (hypothetical protein SELMODRAFT_447134 [Selaginella moellendorffii] >gi|300144436|gb|EFJ11120.1| hypothetical protein SELMODRAFT_447134 [Selaginella moellendorffii]) HSP 1 Score: 170.244 bits (430), Expect = 3.428e-43 Identity = 103/282 (36.52%), Postives = 157/282 (55.67%), Query Frame = 0 Query: 134 LPAMAADPSRAQIQQVQRAFQAFNDRDLRNAEALFDQSVQAWEQLERPRDEMAALVKARGNVKVDLKKFEAAIEDFDRVLSIMSVDGTKTDGSGEAAYSEYPDVFVQRGLAWEGLSKWEAAVQDYSRAIQLWGGGRGEGINPFVLTFRGNALTRLGRYKDALQDFEASADLFLASRDEEDALLARANAALTYYELGYEETGVKLMQDVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTT-----GCASYRDLDFVQRIRRWPPSLVKKLEGFL 410 + A +A RA +Q+ Q + D + + D++ + ++++ A ++ RG V+VD K+FE A+ DFD + + AYS R LA+EGL++W AV DY+ A+Q G +P+V+ RGNAL LGRYK+AL+D+ AS D F +R+ + A+ A+ANAAL ++G E G+K + V RR PG +D+ ALAA W G AE EW FACE+ + GC Y+D D+++RIRRWPP +++ ++ FL Sbjct: 185 IEAGSAAGIRALVQEAQEEWGRGLDPENPDRATSLDRACRIFDRIVAMDPARTAWLEGRGQVRVDAKRFEEAVADFDEAI--------RRQPGNYRAYS-------GRALAFEGLAQWSNAVADYTEALQRGRAATGY-RDPYVMNSRGNALASLGRYKEALRDYSASFDAFQDARELDGAIYAKANAALMRIQVGDEANGLKELLAVARRAPGSIDMRAALAAVYWSMGRANEAEDEWEFACEKINSGRLFDGCERYKDTDWLKRIRRWPPVMIQHMDDFL 450 The following BLAST results are available for this feature:
BLAST of EWM30109.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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