EWM25052.1, cds5646 (CDS) Nannochloropsis gaditana

Overview
NameEWM25052.1
Unique Namecds5646
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:517636..518205 -
Alignment locationCM002466.1:517429..517491 -
Alignment locationCM002466.1:517152..517313 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25052.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100049g7.2111.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:517636..518205 -
CM002466.1supercontigCM002466.1:517429..517491 -
CM002466.1supercontigCM002466.1:517152..517313 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25052.1 vs. NCBI_GenBank
Match: gi|585106688|gb|EWM25052.1| (hypothetical protein Naga_100049g7 [Nannochloropsis gaditana])

HSP 1 Score: 539.65 bits (1389), Expect = 0.000e+0
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0
Query:    1 MAIRRGIACSILLFLVAVTHAFVRPAAPSSLQVRKQQHPGPPRGHPEHSGLKPLQAKGSGPEFGRKQAKRDLMERQRAMAEFNAEIETTPVFQVFAATQKMKGLWMPVAAFKADNVAKGVVDASLQEGIAANMFKGVYKAQVETAVSKAIFDNERRLREQGQAMHATLKNAPRDQIIWGFKILYKPLQDKFGKTQQPTVVTKDMSKSLFDKFKDSVSNKVQETFSLKLEEPAPTTPTPPPAGGGKKKKGGKKDKSGAAASAASE 264
            MAIRRGIACSILLFLVAVTHAFVRPAAPSSLQVRKQQHPGPPRGHPEHSGLKPLQAKGSGPEFGRKQAKRDLMERQRAMAEFNAEIETTPVFQVFAATQKMKGLWMPVAAFKADNVAKGVVDASLQEGIAANMFKGVYKAQVETAVSKAIFDNERRLREQGQAMHATLKNAPRDQIIWGFKILYKPLQDKFGKTQQPTVVTKDMSKSLFDKFKDSVSNKVQETFSLKLEEPAPTTPTPPPAGGGKKKKGGKKDKSGAAASAASE
Sbjct:    1 MAIRRGIACSILLFLVAVTHAFVRPAAPSSLQVRKQQHPGPPRGHPEHSGLKPLQAKGSGPEFGRKQAKRDLMERQRAMAEFNAEIETTPVFQVFAATQKMKGLWMPVAAFKADNVAKGVVDASLQEGIAANMFKGVYKAQVETAVSKAIFDNERRLREQGQAMHATLKNAPRDQIIWGFKILYKPLQDKFGKTQQPTVVTKDMSKSLFDKFKDSVSNKVQETFSLKLEEPAPTTPTPPPAGGGKKKKGGKKDKSGAAASAASE 264          
BLAST of EWM25052.1 vs. NCBI_GenBank
Match: gi|551554495|ref|XP_005764480.1| (hypothetical protein EMIHUDRAFT_311445 [Emiliania huxleyi CCMP1516] >gi|551556010|ref|XP_005765157.1| hypothetical protein EMIHUDRAFT_371257 [Emiliania huxleyi CCMP1516] >gi|551627071|ref|XP_005793525.1| hypothetical protein EMIHUDRAFT_372733 [Emiliania huxleyi CCMP1516] >gi|485614195|gb|EOD12051.1| hypothetical protein EMIHUDRAFT_311445 [Emiliania huxleyi CCMP1516] >gi|485615038|gb|EOD12728.1| hypothetical protein EMIHUDRAFT_371257 [Emiliania huxleyi CCMP1516] >gi|485648170|gb|EOD41096.1| hypothetical protein EMIHUDRAFT_372733 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 71.2478 bits (173), Expect = 2.523e-11
Identity = 42/147 (28.57%), Postives = 81/147 (55.10%), Query Frame = 0
Query:   76 QRAMAEFNAEIETTPVFQVFAATQKMKGLWMPVAAFKADNVAKGVVDASLQEGIAANMFKGVYKAQVETAVSKAIFDNERRLREQGQAMHATLKNAPRDQIIWGFKILYKPLQDKFGKTQQPTVVTKDMSKSLFDKFKDSVSNKVQE 222
            Q+   E +A  + TP+F ++A   K + +W PV+  + D  +KG+V A L   +A    KGV+K +++  V+++IF++ERRL +  +  +  +K  P   + WG+KI+   +     K + P    + ++K L    ++S ++K Q+
Sbjct:   61 QQEFREPDAPPDGTPLFYLYARNPKTRVMWYPVSVLRGDGQSKGLVGAWLGSPLA----KGVFKERLDEGVARSIFESERRLTDMARQQYPAIKKLP--SLEWGYKIVATGVSTAVAKGELPEQKVQMVTKELMQ--QESWADKAQK 199          
The following BLAST results are available for this feature:
BLAST of EWM25052.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106688|gb|EWM25052.1|0.000e+0100.00hypothetical protein Naga_100049g7 [Nannochloropsi... [more]
gi|551554495|ref|XP_005764480.1|2.523e-1128.57hypothetical protein EMIHUDRAFT_311445 [Emiliania ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5661rna5661Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications