EWM25023.1, cds5615 (CDS) Nannochloropsis gaditana

Overview
NameEWM25023.1
Unique Namecds5615
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:443981..445402 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25023.1
Productmetaxin 1
Orig transcript idgnl|cribi|Naga_100049g38.2082.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:443981..445402 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR010987Glutathione-S-Trfase_C-like
IPR004046GST_C
Homology
BLAST of EWM25023.1 vs. NCBI_GenBank
Match: gi|585106659|gb|EWM25023.1| (metaxin 1 [Nannochloropsis gaditana])

HSP 1 Score: 959.903 bits (2480), Expect = 0.000e+0
Identity = 473/473 (100.00%), Postives = 473/473 (100.00%), Query Frame = 0
Query:    1 MYKRNMLGTLASDCLLHQPLPTSPHPSSGSLMFSSDFFGTDFTKNPLGANKPSLCHEHAVEPTPIKAHAERSYPFVLLQFRPAFALQLYLRFVRAPYVVRNLEYPVLETVGQLPVLMDGQFLLPEEDALGYLREHYPALDLDAKLSGARRAQVLALHALVREKLAPAVGASRYRDERNFVQNVRAVILRATRFPLGPAISTAERRRGMQEQRWRGLADGGMGVGEVLTRAQCVYRELDNLLGASTGDFFFGREPTSFDACLFGHLAEALADVNVLVLVSTFDNLMRFFGRIAEDFFNVGAQAAASAASSSTSLSASLGGPVREPQGFSIASDLKECYRHADYMNNRNPFNQVEAAKLCAEAPLVPEPMVQKFLEGGGLQGSGDASAGGRGEAGGAPGSSGPADASGSTGTVGGRKKAEELEEERERRRENVLWLTVVGGVVSFFLLFQGVLALATGEIEIVEEEEVDGEMEEE 473
            MYKRNMLGTLASDCLLHQPLPTSPHPSSGSLMFSSDFFGTDFTKNPLGANKPSLCHEHAVEPTPIKAHAERSYPFVLLQFRPAFALQLYLRFVRAPYVVRNLEYPVLETVGQLPVLMDGQFLLPEEDALGYLREHYPALDLDAKLSGARRAQVLALHALVREKLAPAVGASRYRDERNFVQNVRAVILRATRFPLGPAISTAERRRGMQEQRWRGLADGGMGVGEVLTRAQCVYRELDNLLGASTGDFFFGREPTSFDACLFGHLAEALADVNVLVLVSTFDNLMRFFGRIAEDFFNVGAQAAASAASSSTSLSASLGGPVREPQGFSIASDLKECYRHADYMNNRNPFNQVEAAKLCAEAPLVPEPMVQKFLEGGGLQGSGDASAGGRGEAGGAPGSSGPADASGSTGTVGGRKKAEELEEERERRRENVLWLTVVGGVVSFFLLFQGVLALATGEIEIVEEEEVDGEMEEE
Sbjct:    1 MYKRNMLGTLASDCLLHQPLPTSPHPSSGSLMFSSDFFGTDFTKNPLGANKPSLCHEHAVEPTPIKAHAERSYPFVLLQFRPAFALQLYLRFVRAPYVVRNLEYPVLETVGQLPVLMDGQFLLPEEDALGYLREHYPALDLDAKLSGARRAQVLALHALVREKLAPAVGASRYRDERNFVQNVRAVILRATRFPLGPAISTAERRRGMQEQRWRGLADGGMGVGEVLTRAQCVYRELDNLLGASTGDFFFGREPTSFDACLFGHLAEALADVNVLVLVSTFDNLMRFFGRIAEDFFNVGAQAAASAASSSTSLSASLGGPVREPQGFSIASDLKECYRHADYMNNRNPFNQVEAAKLCAEAPLVPEPMVQKFLEGGGLQGSGDASAGGRGEAGGAPGSSGPADASGSTGTVGGRKKAEELEEERERRRENVLWLTVVGGVVSFFLLFQGVLALATGEIEIVEEEEVDGEMEEE 473          
BLAST of EWM25023.1 vs. NCBI_GenBank
Match: gi|553189883|ref|XP_005855093.1| (hypothetical protein NGA_2054500, partial [Nannochloropsis gaditana CCMP526] >gi|422293967|gb|EKU21267.1| hypothetical protein NGA_2054500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 218.009 bits (554), Expect = 1.689e-66
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0
Query:   30 SLMFSSDFFGTDFTKNPLGANKPSLCHEHAVEPTPIKAHAERSYPFVLLQFRPAFALQLYLRFVRAPYVVRNLEYPVLETVGQLPVLMDGQFLLPEEDALGYLR 133
            SLMFSSDFFGTDFTKNPLGANKPSLCHEHAVEPTPIKAHAERSYPFVLLQFRPAFALQLYLRFVRAPYVVRNLEYPVLETVGQLPVLMDGQFLLPEEDALGYLR
Sbjct:    1 SLMFSSDFFGTDFTKNPLGANKPSLCHEHAVEPTPIKAHAERSYPFVLLQFRPAFALQLYLRFVRAPYVVRNLEYPVLETVGQLPVLMDGQFLLPEEDALGYLR 104          
BLAST of EWM25023.1 vs. NCBI_GenBank
Match: gi|298711211|emb|CBJ32432.1| (Sorting and Assembly Machinery 35kDa protein [Ectocarpus siliculosus])

HSP 1 Score: 179.489 bits (454), Expect = 6.096e-48
Identity = 115/319 (36.05%), Postives = 159/319 (49.84%), Query Frame = 0
Query:   61 EPTPIKAHAERSYPFVLLQFRPAFALQLYLRFVRAPYVVRNLEYPVLETVGQLPVLMDGQFLLPEEDALGYLREHYPALDLDAKLSGARRAQVLALHALVREKLAPAVGASRYR-DERNFVQNVRAVILRATRFPLGPAISTAERRRGMQEQRWRGLADGGMGVGEVLTRAQCVYRELDNLLGASTGDFFFGREPTSFDACLFGHLAEALADVNVLVLVSTFDNLMRFFGRIAEDFFNVGAQAAASAASSSTSLSASLGGPVREPQGFSIASDLKECYRHADYMNNRNPFNQVEAAKLCAEAPLVPEPMVQKFLEGGGL 378
            +P P+  H       V+ QFRPA+ +Q +LRFVR PY V N  Y      G  P L DGQF+L  EDA G++       D+D  L+ A + +  AL  LVRE L P +   RY  DE    Q V   + +A  +PL      AE RR  +E   RGL    +   E++ RA+ +Y  LD  LG S   FFFG  PTS DA +FGHLAEA     +L L+  FDNL R F  + +++F  G+    S+     + S   G   R          L++    ADY+N+ N FNQ+    LC+E P + +P   + +   G+
Sbjct:   36 QPGPVITHGSALDVMVVTQFRPAWEIQAHLRFVRLPYRVENSSYMGSAATGLYPALTDGQFVLRSEDAAGHIASRRS--DVDVGLTEAEKVEAQALAMLVREGLQPLLRVMRYMGDEGEVRQTVHPPMKKALSWPLSWWSPAAEGRRSKRESAVRGL--DRLSKAELIGRAKEMYAALDLRLGNSKEAFFFGSRPTSVDAVVFGHLAEAWTIAVLLDLLPAFDNLSRLFRHVCDNYFRPGSFPPPSSGGEGVAESKKSGSEDR----------LRDAMLRADYVNSHNAFNQLAGCALCSEVPYIEDPYPPRPIANAGI 340          
BLAST of EWM25023.1 vs. NCBI_GenBank
Match: gi|1173953647|gb|OQS01175.1| (hypothetical protein ACHHYP_01722 [Achlya hypogyna])

HSP 1 Score: 122.865 bits (307), Expect = 2.342e-27
Identity = 76/227 (33.48%), Postives = 117/227 (51.54%), Query Frame = 0
Query:   76 VLLQFRPAFALQLYLRFVRAPYVVRNLEYPVLETVGQLPVLMDGQFLLPEEDALGYLREHYPALDLDAKLSGARRAQVLALHALVREKLAPAVGASRYRDERNFVQNVRAVILRATRFPLGPAISTAERRRGMQEQRWRGLADGGMGVGE-VLTRAQCVYRELDNLLGASTGDFFFGREPTSFDACLFGHLAEALADVNVLVLVSTF-DNLMRFFGRIAEDFFNVGA 300
             L QF PA+ +Q Y+RF   P  ++N +YP  E  G+LP L DG +LL ++D + +L+ ++   D+DA L+ A++ + LA  A+V+EKL   +   R+ D   + +  R  I R   FPL   +      + M       LA  G    E V   A+  Y  L+  L AS G +FFG  P++ DA +FGHL +AL+DV +  +V      L+ F   +   FF   +
Sbjct:   53 TLHQFLPAWDVQAYVRFAEIPLHIKNAKYPSFEATGELPQLRDGHYLLGKDDIIMHLQTYHK--DIDASLTDAQKGESLAFKAMVQEKLHRVLLYCRWVDPITYKEVTRPAITRVLPFPLSRILP-----KQMHSSMAAKLAAAGYETQEQVYIAARDCYSALNARLEASAGPYFFGSSPSALDAVVFGHLVDALSDVQLRDVVHVHGPRLLSFAEHVRAAFFGTAS 272          
BLAST of EWM25023.1 vs. NCBI_GenBank
Match: gi|813125864|ref|XP_012196845.1| (hypothetical protein SPRG_02868 [Saprolegnia parasitica CBS 223.65] >gi|641538560|gb|KDO32391.1| hypothetical protein SPRG_02868 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 119.398 bits (298), Expect = 4.572e-26
Identity = 76/232 (32.76%), Postives = 119/232 (51.29%), Query Frame = 0
Query:   76 VLLQFRPAFALQLYLRFVRAPYVVRNLEYPVLETVGQLPVLMDGQFLLPEEDALGYLREHYPALDLDAKLSGARRAQVLALHALVREKLAPAVGASRYRDERNFVQNVRAVILRATRFPLGPAISTAERRRGMQEQRWRGLADGGMGVGE-VLTRAQCVYRELDNLLGASTGDFFFGREPTSFDACLFGHLAEALADVNVLVLVSTF-DNLMRFFGRIAEDFFNVGAQAAAS 305
             L QF PA+ +Q Y+RF + P  ++N +YP  E  G+LP L DG +LL ++D + +L+ ++   D+D  LS  ++ + LA  ++V+EKL   +   R+ D   + +  R  + R   FPL   +      + M       LA  G    E V   A+  Y  L+  LG   G FF+G  PTS DA +FGHL +AL+DV +  +V      L+ F   +   +F  G++A  S
Sbjct:   53 TLHQFLPAYDVQAYVRFAKIPLHIKNAKYPSFEATGELPQLRDGHYLLAKDDIIMHLQTYH--TDIDGHLSAVQKGESLAFKSMVQEKLQRVLHYCRWVDPITYKEVTRPAVQRVLPFPLNRVLP-----KKMHHAMTSELATAGYASQEQVYVAARDCYAALNARLG--DGPFFYGAAPTSLDAIVFGHLVDALSDVQLRDVVHIHGPRLLSFAETVRSTYF--GSKAMGS 273          
BLAST of EWM25023.1 vs. NCBI_GenBank
Match: gi|698785631|ref|XP_009825859.1| (hypothetical protein H257_03453 [Aphanomyces astaci] >gi|574118687|gb|ETV84167.1| hypothetical protein H257_03453 [Aphanomyces astaci])

HSP 1 Score: 119.398 bits (298), Expect = 5.070e-26
Identity = 77/239 (32.22%), Postives = 120/239 (50.21%), Query Frame = 0
Query:   77 LLQFRPAFALQLYLRFVRAPYVVRNLEYPVLETVGQLPVLMDGQFLLPEEDALGYLREHYPALDLDAKLSGARRAQVLALHALVREKLAPAVGASRYRDERNFVQNVRAVILRATRFPLGPAISTAERRRGMQEQRWRGLADGGMGVGEVLTRAQCVYRELDNLLGASTGDFFFGREPTSFDACLFGHLAEALADVNVLVLVSTF-DNLMRFFGRIAEDFFNVGAQAAASAASSSTSLS 314
            L QF PA+ +Q Y RF      + N +YP  ET G LP L DG FL+P  D + +L+ +Y   DLDA L+  +RA+ +A  ALV+EKLA  +   ++ D   + +  R  + R   FPL   +      R          +   +    V   A+  Y  L++ L AS G +FFG  P++ DA +FGH+ +AL+D  +  +V+     L++F   +   +F   A AA    S+S + +
Sbjct:   59 LHQFFPAWDVQAYARFAEIKLHMVNSQYPEYETTGALPQLNDGHFLVPAGDIILHLQTYYK--DLDAPLTDKQRAESIAFRALVQEKLARVLDYCQWVDPITYSEVTRPAVQRVMPFPLNRVVPKLLHVRHTAAFH---ASTSLLSKEHVYLTARDSYVALNSFLEASDGPYFFGTNPSAVDAVVFGHVVDALSDCQLREVVAIHGPRLVQFASHVRHAYFESAAHAALCTQSTSNAFA 292          
BLAST of EWM25023.1 vs. NCBI_GenBank
Match: gi|669163752|ref|XP_008617438.1| (hypothetical protein SDRG_13134 [Saprolegnia diclina VS20] >gi|530730861|gb|EQC29103.1| hypothetical protein SDRG_13134 [Saprolegnia diclina VS20])

HSP 1 Score: 117.857 bits (294), Expect = 1.837e-25
Identity = 78/249 (31.33%), Postives = 124/249 (49.80%), Query Frame = 0
Query:   76 VLLQFRPAFALQLYLRFVRAPYVVRNLEYPVLETVGQLPVLMDGQFLLPEEDALGYLREHYPALDLDAKLSGARRAQVLALHALVREKLAPAVGASRYRDERNFVQNVRAVILRATRFPLGPAISTAERRRGMQEQRWRGLADGGMGVGE-VLTRAQCVYRELDNLLGASTGDFFFGREPTSFDACLFGHLAEALADVNVLVLVSTF-DNLMRFFGRIAEDFFN---VGAQAAASAASSSTSLSASLGG 319
             L QF PA+ +Q Y+RF + P  ++N +YP  E  G LP L DG +LL ++D + +L+ ++   D+D  LS  ++ + LA  ++V+EKL   +   R+ D   + +  R  + R   FPL   +      + M       LA  G    E V   A+  Y  L+  LG   G FF+G  PTS DA +FGHL +AL+DV +  +V      L+ F   +   +F    +G+    +  S  ++LS +  G
Sbjct:   53 TLHQFLPAYDVQAYVRFAKIPLHIKNAKYPSFEATGDLPQLRDGHYLLAKDDIIMHLQTYH--TDIDGHLSATQKGESLAFKSMVQEKLQRVLLFCRWVDPITYKEVTRPAVQRVLPFPLNRVLP-----KKMHHAMTSELATAGYASQEQVYVAARDCYAALNARLG--DGPFFYGAAPTSLDAVVFGHLVDALSDVQLRDVVQIHGPRLLTFAETVRSTYFGSKAMGSLWTENVPSPFSTLSTAFMG 292          
BLAST of EWM25023.1 vs. NCBI_GenBank
Match: gi|1173949097|gb|OQR97170.1| (hypothetical protein THRCLA_07078 [Thraustotheca clavata])

HSP 1 Score: 115.161 bits (287), Expect = 1.287e-24
Identity = 73/224 (32.59%), Postives = 116/224 (51.79%), Query Frame = 0
Query:   76 VLLQFRPAFALQLYLRFVRAPYVVRNLEYPVLETVGQLPVLMDGQFLLPEEDALGYLREHYPALDLDAKLSGARRAQVLALHALVREKLAPAVGASRYRDERNFVQNVRAVILRATRFPLGPAISTAERRRGMQEQRWRGLADGGMGVGE-VLTRAQCVYRELD-NLLGASTGDFFFGREPTSFDACLFGHLAEALADVNVLVLVSTF-DNLMRFFGRIAEDFF 296
            VLLQF PA+ +Q YLRF +    ++N +YP  E  G+LP L DG +LL ++D + +L+ ++   D+D +L+  ++ + LA  ++V+EKL   +   R+ D   + +  R  + R   FPL   +      + M       LA  G    E V   A+  Y  L+  L     G +F+G  PTS DA +FGHL +AL+DV +  +V      L+ F   I + +F
Sbjct:   51 VLLQFMPAWDVQAYLRFAKIGMHIKNAKYPSFEATGELPQLNDGHYLLGKDDIIMHLQTYHK--DIDMELNDVQKGESLAFKSMVQEKLHRVLLYCRWVDPITYKEVTRPAVQRVLPFPLSRILP-----KQMHVSITNMLAANGYETQEQVYITARDCYSALNARLESVKDGPYFYGSTPTSLDALVFGHLVDALSDVQLRDVVHIHGSRLITFAEHIRDTYF 267          
BLAST of EWM25023.1 vs. NCBI_GenBank
Match: gi|673019194|ref|XP_008863558.1| (hypothetical protein H310_01977 [Aphanomyces invadans] >gi|574480472|gb|ETW07465.1| hypothetical protein H310_01977 [Aphanomyces invadans])

HSP 1 Score: 112.464 bits (280), Expect = 1.326e-23
Identity = 75/233 (32.19%), Postives = 118/233 (50.64%), Query Frame = 0
Query:   77 LLQFRPAFALQLYLRFVRAPYVVRNLEYPVLETVGQLPVLMDGQFLLPEEDALGYLREHYPALDLDAKLSGARRAQVLALHALVREKLAPAVGASRYRDERNFVQNVRAVILRATRFPLG---PAISTAERRRGMQEQRWRGLADGGMGVGEVLTRAQCVYRELDNLL--GASTGDFFFGREPTSFDACLFGHLAEALADVNVLVLVSTF-DNLMRFFGRIAEDFFNVGAQAA 303
            L QF PA+ +Q Y RF +    + N  YP  E  G LP L DG FL+P  D + +L+ +Y   DLDA LS  +RA+ +A  A+V+EKLA  +   ++ D   + +  R  + R   FPL    P +  A              +   +    V   A+  Y  L++ L   A+ G FFFG EP++ DA +FGH+ +AL+D  +  +++     L++F   + + +F+  A AA
Sbjct:   60 LHQFFPAWEVQAYARFAQIKLHMVNARYPEYEATGMLPQLNDGHFLVPTGDIILHLQTYYK--DLDANLSDKQRAESVAFRAIVQEKLARVLDYCQWVDPITYSEVTRPAVQRVMPFPLNRIVPKLLHARHTAAFHA------SSSLLSKEHVYLTARDSYVALNSFLEESANRGSFFFGDEPSALDAVVFGHVVDALSDGQLREVIAIHGPRLVQFATHVRDVYFDSAAHAA 284          
BLAST of EWM25023.1 vs. NCBI_GenBank
Match: gi|1214705429|gb|OWZ17126.1| (putative mitochondrial protein [Phytophthora megakarya])

HSP 1 Score: 106.301 bits (264), Expect = 1.821e-21
Identity = 84/305 (27.54%), Postives = 145/305 (47.54%), Query Frame = 0
Query:   32 MFSSDFFGTDFTKNPLGANKPSLCHEHAVEPTPIKAHAERSY----PFVLLQFRPAFALQLYLRFVRAPYVVRNLEYPVLETVGQLPVLMDGQFLLPEEDALGYLREHYPALDLDAKLSGARRAQVLALHALVREKLAPAVGASRYRDERNFVQNVRAVILRATRFPLGPAISTAERRRGMQEQRWRGLADGGMGVGEVLTRAQCVYRELDNLLGASTGDFFFGREPTSFDACLFGHLAEALADVNVLVLVSTFDNLMRFFG-RIAEDFFNVGAQAAASAASSSTSLSASLGGPVREPQGFSIAS 331
            MF  D F      +PLG +   L H+  V+ T +++  + S       VL QF PA+ +Q YLR       V N +YP  E  G+LP L DG FLLP+E+ + +L+  +   D+D  LS A+R++  A  +++ EKL   +   R+ D   + +  R  + R   FPL   +        M++ R  G++        V+ R  C Y  L+  L ++   +FFG +P++ D  +FGH+ +A+++  ++  V     L+     RI + +F    +   S +  + ++ +       +P  FS  S
Sbjct:    1 MFPEDRF------HPLGPDADRL-HDDLVDATELESTPKTSQQLGSTLVLHQFLPAWDVQAYLRIAGIRLHVHNSKYPTYEATGELPQLSDGNFLLPKEEIIMHLQTFHK--DIDEFLSDAQRSESYAYRSMLSEKLQRVMLYCRWVDPATYREVTRPHMKRNIPFPLNLFLPKKMHLDTMEKLRMYGISTKEQAY--VIAR-DC-YTALNTKLESAGTPYFFGDQPSALDVAVFGHIVDAMSNSQLVATVHQHAPLLIALAERIRDAYFGARGEQPTSLSEEAEAVYSE-----NQPNYFSTTS 287          
The following BLAST results are available for this feature:
BLAST of EWM25023.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106659|gb|EWM25023.1|0.000e+0100.00metaxin 1 [Nannochloropsis gaditana][more]
gi|553189883|ref|XP_005855093.1|1.689e-66100.00hypothetical protein NGA_2054500, partial [Nannoch... [more]
gi|298711211|emb|CBJ32432.1|6.096e-4836.05Sorting and Assembly Machinery 35kDa protein [Ecto... [more]
gi|1173953647|gb|OQS01175.1|2.342e-2733.48hypothetical protein ACHHYP_01722 [Achlya hypogyna... [more]
gi|813125864|ref|XP_012196845.1|4.572e-2632.76hypothetical protein SPRG_02868 [Saprolegnia paras... [more]
gi|698785631|ref|XP_009825859.1|5.070e-2632.22hypothetical protein H257_03453 [Aphanomyces astac... [more]
gi|669163752|ref|XP_008617438.1|1.837e-2531.33hypothetical protein SDRG_13134 [Saprolegnia dicli... [more]
gi|1173949097|gb|OQR97170.1|1.287e-2432.59hypothetical protein THRCLA_07078 [Thraustotheca c... [more]
gi|673019194|ref|XP_008863558.1|1.326e-2332.19hypothetical protein H310_01977 [Aphanomyces invad... [more]
gi|1214705429|gb|OWZ17126.1|1.821e-2127.54putative mitochondrial protein [Phytophthora megak... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5629rna5629Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications