EWM25093.1, cds5584 (CDS) Nannochloropsis gaditana

Overview
NameEWM25093.1
Unique Namecds5584
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:375768..375888 -
Alignment locationCM002466.1:375528..375625 -
Alignment locationCM002466.1:374865..375300 -
Alignment locationCM002466.1:374303..374745 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25093.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100016g6.2902.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:375768..375888 -
CM002466.1supercontigCM002466.1:375528..375625 -
CM002466.1supercontigCM002466.1:374865..375300 -
CM002466.1supercontigCM002466.1:374303..374745 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25093.1 vs. NCBI_GenBank
Match: gi|585106731|gb|EWM25093.1| (hypothetical protein Naga_100016g6 [Nannochloropsis gaditana])

HSP 1 Score: 753.821 bits (1945), Expect = 0.000e+0
Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 0
Query:    1 MQAHPLKERGLEFALRKTTVQEFFRDFISDKAVLGIDKYHEWQGDKDVEVSPWQEVNQGVGATRVVRFVSSLEGLPVGPPTALVMQLQRVRVFGQHGMVLETSSSMENVPAGDCFTLEDRWVVRPLPASEAPTRTEAGALSIETSFEVRFVKSTLFKKIIESRSRADTLEYHRRWFEMIEKHVARRHHERSRTREQARRSSHPLRRTVENNAGRGEKTVGPPPCQTDQMGSFRPRSPCLHPRLLSPPPCAQYDAPGVPTVCASNGAANGRTVSPDCGAMAGHSFGADCLAGRVARDATGDPRPDLKVRARGSLRLVDLTSDSHATCVRYHGAARRVMRNVEAFSVFSPCSLEGGTCNDEVYIGTN 365
            MQAHPLKERGLEFALRKTTVQEFFRDFISDKAVLGIDKYHEWQGDKDVEVSPWQEVNQGVGATRVVRFVSSLEGLPVGPPTALVMQLQRVRVFGQHGMVLETSSSMENVPAGDCFTLEDRWVVRPLPASEAPTRTEAGALSIETSFEVRFVKSTLFKKIIESRSRADTLEYHRRWFEMIEKHVARRHHERSRTREQARRSSHPLRRTVENNAGRGEKTVGPPPCQTDQMGSFRPRSPCLHPRLLSPPPCAQYDAPGVPTVCASNGAANGRTVSPDCGAMAGHSFGADCLAGRVARDATGDPRPDLKVRARGSLRLVDLTSDSHATCVRYHGAARRVMRNVEAFSVFSPCSLEGGTCNDEVYIGTN
Sbjct:    1 MQAHPLKERGLEFALRKTTVQEFFRDFISDKAVLGIDKYHEWQGDKDVEVSPWQEVNQGVGATRVVRFVSSLEGLPVGPPTALVMQLQRVRVFGQHGMVLETSSSMENVPAGDCFTLEDRWVVRPLPASEAPTRTEAGALSIETSFEVRFVKSTLFKKIIESRSRADTLEYHRRWFEMIEKHVARRHHERSRTREQARRSSHPLRRTVENNAGRGEKTVGPPPCQTDQMGSFRPRSPCLHPRLLSPPPCAQYDAPGVPTVCASNGAANGRTVSPDCGAMAGHSFGADCLAGRVARDATGDPRPDLKVRARGSLRLVDLTSDSHATCVRYHGAARRVMRNVEAFSVFSPCSLEGGTCNDEVYIGTN 365          
BLAST of EWM25093.1 vs. NCBI_GenBank
Match: gi|298706349|emb|CBJ29358.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 122.865 bits (307), Expect = 5.671e-27
Identity = 58/167 (34.73%), Postives = 103/167 (61.68%), Query Frame = 0
Query:   20 VQEFFRDFISDKAVLGIDKYHEWQGDKDVEVSPWQEVNQGVGATRVVRFVSSLEGLPVGPPTALVMQLQRVRVFGQHGMVLETSSSMENVPAGDCFTLEDRWVVRPLPASEAPTRTEAGALSIETSFEVRFVKSTLFKKIIESRSRADTLEYHRRWFEMIEKHVARR 186
            +Q+FF+ FIS+ A  GI  +H+  GD DV+ +PW+     +G TR +RFV  +   P+GP +   ++LQR R++ +HG++LETS+ +E++   D F ++DR VV+P          + GA+ ++   E++F KST+F+K IE++S ++T +    +  M +  + +R
Sbjct:  351 LQDFFQLFISNDAEKGIPAFHQSMGDSDVKATPWKVAGGALGMTREIRFVHPISA-PIGPNSTRAVKLQRCRLYDEHGLILETSTHLEDIVMSDYFQIDDRCVVQP---------GQDGAVRVDVEIEIKFFKSTMFRKTIETKSLSETRQVWESFIGMTKDAIRKR 507          
BLAST of EWM25093.1 vs. NCBI_GenBank
Match: gi|223993931|ref|XP_002286649.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977964|gb|EED96290.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 93.2041 bits (230), Expect = 4.821e-17
Identity = 57/162 (35.19%), Postives = 86/162 (53.09%), Query Frame = 0
Query:   19 TVQEFFRDFISDKAVLGIDKYHEWQGDKDVEVSPWQ--EVNQGVGATRVVRFVSSLEGLPVGPPTALVMQLQRVRVFGQHGMVLETSSSMENVPAGDCFTLEDRWVVRPLPASEAPTRTEAGALSIETSFEVRFVKSTLFKKIIESRSRADTLEYHRRWFEM 178
            TV EF    + D A   I K+    GD DVE +PW+     +G  ATR + + S    +P+ PPTA   + Q +  FG  G+ LE+ + +E+VP  DCF ++DR  V   P          G + +  SF++RFVK T+F++IIE+ +R    E+ + W E 
Sbjct:  390 TVDEFHNLVLKDNAHHSIGKFMTMIGDFDVETTPWEPPAGAKGQPATRTIHY-SHPVNVPMAPPTAKAFKKQYLNKFGSTGLCLESCTIVEDVPMTDCFVVDDRLWVSKDP-------DNCGCI-VGVSFQIRFVKGTMFRRIIENAARG---EFQKWWGEF 539          
BLAST of EWM25093.1 vs. NCBI_GenBank
Match: gi|635363558|emb|CCI47913.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 91.2781 bits (225), Expect = 1.526e-16
Identity = 60/211 (28.44%), Postives = 108/211 (51.18%), Query Frame = 0
Query:   19 TVQEFFRDFISDKAVLGIDKYHEWQGDKDVEVSPWQEVNQGVGATRVVRFVSSLEGLPVGPPTALVMQLQRVRVFGQHGMVLETSSSMENVPAGDCFTLEDRWVVRPLPASEAPTRTEAGA-LSIETSFEVRFVKSTLFKKIIESRSRADTLEYHRRWFEMIEKHVARR----------HHE----RSRTREQARRSSHPLRRTVENNAGR 214
            T +EF + FI D A  G+++++   G  D+ + PW + N   G TR  R+   ++  P+GP T+LV  +Q  +   Q   ++ETS+ + +VP GD F++ DRW + P+       + E+G    ++   +V F KSTL+K  I S++ A+  +   +W    ++ +A R          HH+     +R R    +++   R+TV+ N  +
Sbjct:  248 TPEEFMKQFIYDNAPFGLNEFYRKIGYWDITLDPWTQSNDMDGKTRSARYRVPVDA-PLGPSTSLVDSVQCCKRPNQCVYIVETSTRIVDVPYGDHFSVIDRWTIMPI-------QLESGVGTHLQIELKVAFSKSTLWKSTICSKAAAENTKKFEQWVSHAKETLAARSSSVELSGTKHHKARVPATRNRSAGMKTNISHRKTVDANKSQ 450          
BLAST of EWM25093.1 vs. NCBI_GenBank
Match: gi|635363557|emb|CCI47912.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 91.2781 bits (225), Expect = 1.824e-16
Identity = 60/211 (28.44%), Postives = 108/211 (51.18%), Query Frame = 0
Query:   19 TVQEFFRDFISDKAVLGIDKYHEWQGDKDVEVSPWQEVNQGVGATRVVRFVSSLEGLPVGPPTALVMQLQRVRVFGQHGMVLETSSSMENVPAGDCFTLEDRWVVRPLPASEAPTRTEAGA-LSIETSFEVRFVKSTLFKKIIESRSRADTLEYHRRWFEMIEKHVARR----------HHE----RSRTREQARRSSHPLRRTVENNAGR 214
            T +EF + FI D A  G+++++   G  D+ + PW + N   G TR  R+   ++  P+GP T+LV  +Q  +   Q   ++ETS+ + +VP GD F++ DRW + P+       + E+G    ++   +V F KSTL+K  I S++ A+  +   +W    ++ +A R          HH+     +R R    +++   R+TV+ N  +
Sbjct:  252 TPEEFMKQFIYDNAPFGLNEFYRKIGYWDITLDPWTQSNDMDGKTRSARYRVPVDA-PLGPSTSLVDSVQCCKRPNQCVYIVETSTRIVDVPYGDHFSVIDRWTIMPI-------QLESGVGTHLQIELKVAFSKSTLWKSTICSKAAAENTKKFEQWVSHAKETLAARSSSVELSGTKHHKARVPATRNRSAGMKTNISHRKTVDANKSQ 454          
BLAST of EWM25093.1 vs. NCBI_GenBank
Match: gi|635363556|emb|CCI47911.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 91.2781 bits (225), Expect = 1.841e-16
Identity = 60/211 (28.44%), Postives = 108/211 (51.18%), Query Frame = 0
Query:   19 TVQEFFRDFISDKAVLGIDKYHEWQGDKDVEVSPWQEVNQGVGATRVVRFVSSLEGLPVGPPTALVMQLQRVRVFGQHGMVLETSSSMENVPAGDCFTLEDRWVVRPLPASEAPTRTEAGA-LSIETSFEVRFVKSTLFKKIIESRSRADTLEYHRRWFEMIEKHVARR----------HHE----RSRTREQARRSSHPLRRTVENNAGR 214
            T +EF + FI D A  G+++++   G  D+ + PW + N   G TR  R+   ++  P+GP T+LV  +Q  +   Q   ++ETS+ + +VP GD F++ DRW + P+       + E+G    ++   +V F KSTL+K  I S++ A+  +   +W    ++ +A R          HH+     +R R    +++   R+TV+ N  +
Sbjct:  282 TPEEFMKQFIYDNAPFGLNEFYRKIGYWDITLDPWTQSNDMDGKTRSARYRVPVDA-PLGPSTSLVDSVQCCKRPNQCVYIVETSTRIVDVPYGDHFSVIDRWTIMPI-------QLESGVGTHLQIELKVAFSKSTLWKSTICSKAAAENTKKFEQWVSHAKETLAARSSSVELSGTKHHKARVPATRNRSAGMKTNISHRKTVDANKSQ 484          
BLAST of EWM25093.1 vs. NCBI_GenBank
Match: gi|552840651|ref|XP_005850104.1| (hypothetical protein CHLNCDRAFT_142175 [Chlorella variabilis] >gi|307109765|gb|EFN58002.1| hypothetical protein CHLNCDRAFT_142175 [Chlorella variabilis])

HSP 1 Score: 88.1965 bits (217), Expect = 2.502e-15
Identity = 61/201 (30.35%), Postives = 96/201 (47.76%), Query Frame = 0
Query:    5 PLKERGLEFALRKTTVQEFFRDFISDKAVLGIDKYHEWQGDKDVEVSPWQE---------------------VNQGVGATRVVRFVSSLEGLPVGPPTALVMQLQRVRVFGQHGMVLETSSSMENVPAGDCFTLEDRWVVRPLPASEAPTRTEAGALSIETSFEVRFVKSTLFKKIIESRSRADTLEYHRRWFEMIEKHVA 184
            P  +  LEF L    + EF+  F+++ +   + K+H  +GD  + VS WQ                        Q VG  R V+FV  ++   +GPP A+  Q QR++VF +  +VLETS  M ++P  D F++E RW V P            G   +    +V F K T++++ IE  S  DTLE  + W +M  +++A
Sbjct:  343 PTMQLVLEFDLPCPPL-EFWSRFLANHSNW-LHKFHASRGDSSIRVSKWQRHFKARRAAAAAACTACQAALGWRQHVGMVRDVQFVHPVKAR-IGPPQAVCHQTQRLKVFARRHLVLETSQVMSDIPYADHFSVETRWDVAP----------AKGGSRVTVHIQVPFSKKTMWQRFIEKGSFDDTLEMVQGWRQMASQNLA 530          
BLAST of EWM25093.1 vs. NCBI_GenBank
Match: gi|970645406|gb|KUF85883.1| (GRAM domain-containing protein 1A [Phytophthora nicotianae])

HSP 1 Score: 87.4261 bits (215), Expect = 3.357e-15
Identity = 54/172 (31.40%), Postives = 93/172 (54.07%), Query Frame = 0
Query:   19 TVQEFFRDFISDKAVLGIDKYHEWQGDKDVEVSPWQ---EVNQGVGATRVVRFVSSLEGLPVGPPTALVMQLQRVRVFGQHGM-VLETSSSMENVPAGDCFTLEDRWVVRPLPASEAPTRTEAGALSIETSFEVRFVKSTLFKKIIESRSRADTLEYHRRWFEMIEKHVARR 186
            +V  F   F  D A  G+DK++E  G  ++ ++PW    E  +  G TR ++F   ++  P+GP ++ V  LQ ++    HG+ V+E+S+ + ++P GD F++EDRW +  +P S  P      A  +    +V F KST +KK IE+R+ +D      +W  M ++ +  R
Sbjct:  280 SVDTFMELFYLDNAPFGLDKFNEQTGSTEMSINPWMTPLEDEKSFGMTRSLQFRVPVDA-PIGPKSSQVDVLQCLKE-NDHGVRVVESSTRLVDIPYGDYFSVEDRWTI--VPRSSXP-----NACKVFIELKVVFGKSTFWKKTIETRAISDNRAKWEKWVRMAKEFLDTR 442          
BLAST of EWM25093.1 vs. NCBI_GenBank
Match: gi|1210530708|dbj|GAX10659.1| (hypothetical protein FisN_14Lh167 [Fistulifera solaris])

HSP 1 Score: 87.4261 bits (215), Expect = 3.545e-15
Identity = 47/153 (30.72%), Postives = 86/153 (56.21%), Query Frame = 0
Query:   19 TVQEFFRDFISDKAVLGIDKYHEWQGDKDVEVSPWQEVNQGVGATRVVRFVSSLEGLPVGPPTALVMQLQRVRVFGQHGMVLETSSSMENVPAGDCFTLEDRWVVRPLPASEAPTRTEAGALSIETSFEVRFVKSTLFKKIIESRSRADTLEY 171
            ++  FF  F+ D+A   I +Y E +GD  +  S W++V+  + +TR++ +   +  +P+ PP A   + Q+   +G +GM++ET + + +VP  DCF + DR +V+       P   E   L++E  F++ F+KST+FK II   + ++   Y
Sbjct:  341 SLDRFFTLFVEDEANYSISRYLEGRGDMSLTASLWKKVSD-IESTRMINYTHPM-NIPLAPPQADASKEQKCMRYGNYGMMIETKTIVRDVPMADCFYVTDRLMVK-------PDGDEKIKLNME--FDITFIKSTMFKGIISKTTTSEVTSY 482          
BLAST of EWM25093.1 vs. NCBI_GenBank
Match: gi|675174145|ref|XP_008895957.1| (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|566013466|gb|ETI36377.1| hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|567950916|gb|ETK76623.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|567979583|gb|ETL30061.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568103606|gb|ETN18263.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|570317131|gb|ETO65079.1| hypothetical protein, variant 2 [Phytophthora parasitica P1976] >gi|570940948|gb|ETP06205.1| hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >gi|570971199|gb|ETP34318.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297])

HSP 1 Score: 87.0409 bits (214), Expect = 3.714e-15
Identity = 54/172 (31.40%), Postives = 93/172 (54.07%), Query Frame = 0
Query:   19 TVQEFFRDFISDKAVLGIDKYHEWQGDKDVEVSPWQ---EVNQGVGATRVVRFVSSLEGLPVGPPTALVMQLQRVRVFGQHGM-VLETSSSMENVPAGDCFTLEDRWVVRPLPASEAPTRTEAGALSIETSFEVRFVKSTLFKKIIESRSRADTLEYHRRWFEMIEKHVARR 186
            +V  F   F  D A  G+DK++E  G  ++ ++PW    E  +  G TR ++F   ++  P+GP ++ V  LQ ++    HG+ V+E+S+ + ++P GD F++EDRW +  +P S  P      A  +    +V F KST +KK IE+R+ +D      +W  M ++ +  R
Sbjct:  200 SVDTFMELFYLDNAPFGLDKFNEQTGSTEMSINPWMTPLEDEKSFGMTRSLQFRVPVDA-PIGPKSSQVDVLQCLKE-NDHGVRVVESSTRLVDIPYGDYFSVEDRWTI--VPRSSNP-----NACKVFIELKVVFGKSTFWKKTIETRAISDNRAKWEKWVRMAKEFLDTR 362          
The following BLAST results are available for this feature:
BLAST of EWM25093.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106731|gb|EWM25093.1|0.000e+0100.00hypothetical protein Naga_100016g6 [Nannochloropsi... [more]
gi|298706349|emb|CBJ29358.1|5.671e-2734.73conserved unknown protein [Ectocarpus siliculosus][more]
gi|223993931|ref|XP_002286649.1|4.821e-1735.19predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|635363558|emb|CCI47913.1|1.526e-1628.44unnamed protein product [Albugo candida][more]
gi|635363557|emb|CCI47912.1|1.824e-1628.44unnamed protein product [Albugo candida][more]
gi|635363556|emb|CCI47911.1|1.841e-1628.44unnamed protein product [Albugo candida][more]
gi|552840651|ref|XP_005850104.1|2.502e-1530.35hypothetical protein CHLNCDRAFT_142175 [Chlorella ... [more]
gi|970645406|gb|KUF85883.1|3.357e-1531.40GRAM domain-containing protein 1A [Phytophthora ni... [more]
gi|1210530708|dbj|GAX10659.1|3.545e-1530.72hypothetical protein FisN_14Lh167 [Fistulifera sol... [more]
gi|675174145|ref|XP_008895957.1|3.714e-1531.40hypothetical protein, variant 2 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5598rna5598Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications