EWM25128.1, cds5576 (CDS) Nannochloropsis gaditana

Overview
NameEWM25128.1
Unique Namecds5576
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:355793..355920 -
Alignment locationCM002466.1:355562..355662 -
Alignment locationCM002466.1:354883..355364 -
Alignment locationCM002466.1:353815..354264 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25128.1
Productran protein binding protein
Orig transcript idgnl|cribi|Naga_100016g15.2937.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:355793..355920 -
CM002466.1supercontigCM002466.1:355562..355662 -
CM002466.1supercontigCM002466.1:354883..355364 -
CM002466.1supercontigCM002466.1:353815..354264 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR018222Nuclear_transport_factor_2_euk
IPR002075NTF2
Homology
BLAST of EWM25128.1 vs. NCBI_GenBank
Match: gi|585106766|gb|EWM25128.1| (ran protein binding protein [Nannochloropsis gaditana])

HSP 1 Score: 780.4 bits (2014), Expect = 0.000e+0
Identity = 386/386 (100.00%), Postives = 386/386 (100.00%), Query Frame = 0
Query:    1 MASTKSTKSSSETRNTNSGNSSSKCVTNSSYVKKPTPEKVGRRFVLTYYPVMSKSAEDLIKFYKEDSCFSHVPETEEGQDSKAAVGLEEIRARIEALNLGGAVVDIRSVDVQPSKDGAVLVLVQGLMRRRSAPAPSAFVQTFFLAQQENNEAHYYLLNDVFRAWPETPSAHPPSFPSSPGPPTPDPPRSEASPVTASAAAEKEGAMAIARVQAEAMRGQEGVGVQERKETKEEEEEEAEEGAELGMHEAELTALLVGVGGAGTVVRDYRVNKSQYSVFVELGDAESVARVMGVVRADPKRFHLRDGQIPLFLDVKRPPGQLGPHGGASGRRGGIGRGLGGGERGSLLNNGSNSRGGGNENSEHSKKGRPLGPDGAGRGRRREKGEK 386
            MASTKSTKSSSETRNTNSGNSSSKCVTNSSYVKKPTPEKVGRRFVLTYYPVMSKSAEDLIKFYKEDSCFSHVPETEEGQDSKAAVGLEEIRARIEALNLGGAVVDIRSVDVQPSKDGAVLVLVQGLMRRRSAPAPSAFVQTFFLAQQENNEAHYYLLNDVFRAWPETPSAHPPSFPSSPGPPTPDPPRSEASPVTASAAAEKEGAMAIARVQAEAMRGQEGVGVQERKETKEEEEEEAEEGAELGMHEAELTALLVGVGGAGTVVRDYRVNKSQYSVFVELGDAESVARVMGVVRADPKRFHLRDGQIPLFLDVKRPPGQLGPHGGASGRRGGIGRGLGGGERGSLLNNGSNSRGGGNENSEHSKKGRPLGPDGAGRGRRREKGEK
Sbjct:    1 MASTKSTKSSSETRNTNSGNSSSKCVTNSSYVKKPTPEKVGRRFVLTYYPVMSKSAEDLIKFYKEDSCFSHVPETEEGQDSKAAVGLEEIRARIEALNLGGAVVDIRSVDVQPSKDGAVLVLVQGLMRRRSAPAPSAFVQTFFLAQQENNEAHYYLLNDVFRAWPETPSAHPPSFPSSPGPPTPDPPRSEASPVTASAAAEKEGAMAIARVQAEAMRGQEGVGVQERKETKEEEEEEAEEGAELGMHEAELTALLVGVGGAGTVVRDYRVNKSQYSVFVELGDAESVARVMGVVRADPKRFHLRDGQIPLFLDVKRPPGQLGPHGGASGRRGGIGRGLGGGERGSLLNNGSNSRGGGNENSEHSKKGRPLGPDGAGRGRRREKGEK 386          
BLAST of EWM25128.1 vs. NCBI_GenBank
Match: gi|553196236|ref|XP_005856296.1| (ran protein binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292774|gb|EKU20076.1| ran protein binding protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 488.804 bits (1257), Expect = 1.116e-171
Identity = 240/242 (99.17%), Postives = 240/242 (99.17%), Query Frame = 0
Query:    1 MASTKSTKSSSETRNTNSGNSSSKCVTNSSYVKKPTPEKVGRRFVLTYYPVMSKSAEDLIKFYKEDSCFSHVPETEEGQDSKAAVGLEEIRARIEALNLGGAVVDIRSVDVQPSKDGAVLVLVQGLMRRRSAPAPSAFVQTFFLAQQENNEAHYYLLNDVFRAWPETPSAHPPSFPSSPGPPTPDPPRSEASPVTASAAAEKEGAMAIARVQAEAMRGQEGVGVQERKETKEEEEEEAEEGA 242
            MASTKSTKSSSETRNTNSGNSSSKCVTNSSYVKKPTPEKVGRRFVLTYYPVMSKSAEDLIKFYKEDSCFSHVPETEEGQDSKAAVGLEEIRARIEALNLGGAVVDIRSVDVQPSKDGAVLVLVQGLMRRRSAPAPSAFVQTFFLAQQENNEAHYYLLNDVFRAWPETPSAHPPSFPSSPGPPTPDPPRSEASPVTASAAAEKEGAMAIARVQAEAMRGQEGVGVQERKETKEEEEEE E GA
Sbjct:    5 MASTKSTKSSSETRNTNSGNSSSKCVTNSSYVKKPTPEKVGRRFVLTYYPVMSKSAEDLIKFYKEDSCFSHVPETEEGQDSKAAVGLEEIRARIEALNLGGAVVDIRSVDVQPSKDGAVLVLVQGLMRRRSAPAPSAFVQTFFLAQQENNEAHYYLLNDVFRAWPETPSAHPPSFPSSPGPPTPDPPRSEASPVTASAAAEKEGAMAIARVQAEAMRGQEGVGVQERKETKEEEEEEVEAGA 246          
BLAST of EWM25128.1 vs. NCBI_GenBank
Match: gi|752368261|gb|KIO26058.1| (hypothetical protein M407DRAFT_243864 [Tulasnella calospora MUT 4182])

HSP 1 Score: 103.219 bits (256), Expect = 1.987e-20
Identity = 57/135 (42.22%), Postives = 78/135 (57.78%), Query Frame = 0
Query:   28 NSSYVKKPTPEKVGRRFVLTYYPVMSKSAEDLIKFYKEDSCFSHVPETEEGQDSKAAVGLEEIRARIEALNLGGAVVDIRSVDVQPSKDGAVLVLVQGLMRRRSAPAPSAFVQTFFLAQQENNEAHYYLLNDVFR 162
             S+  ++  P +VG +FV  YY  ++K    L  FY ++S FSH     EG+D+KA  G +EI ++I ALN     V I SVD Q S +  +L+ V G M  R  P    FVQTFFLA+Q N    Y++LND+FR
Sbjct:    7 TSTPARQVNPTEVGWQFVPQYYTFVNKQPNRLHCFYTKNSTFSH---GTEGEDTKACFGQQEIHSKIMALNYENCKVFIHSVDAQSSANSGILIQVVGEMSNRDEPW-KKFVQTFFLAEQPNG---YFVLNDIFR 134          
BLAST of EWM25128.1 vs. NCBI_GenBank
Match: gi|1045447472|gb|OCF41210.1| (RAN protein binding protein [Kwoniella heveanensis CBS 569])

HSP 1 Score: 95.9005 bits (237), Expect = 6.825e-18
Identity = 54/134 (40.30%), Postives = 76/134 (56.72%), Query Frame = 0
Query:   29 SSYVKKPTPEKVGRRFVLTYYPVMSKSAEDLIKFYKEDSCFSHVPETEEGQDSKAAVGLEEIRARIEALNLGGAVVDIRSVDVQPSKDGAVLVLVQGLMRRRSAPAPSAFVQTFFLAQQENNEAHYYLLNDVFR 162
            S+   K  P  VG +FV  YY  ++K    L  FY + S F H    EEG++S+ A+G +EI  RI A+      V I S+D Q S +G +++LV G M  + +P    F QTFFLA+Q N    Y++LND+FR
Sbjct:   30 SAQTSKIQPNDVGWQFVPQYYNFVNKQPHRLHCFYNKRSTFIH---GEEGEESQIALGQQEIHDRITAIGYDECKVYIHSIDSQSSANGGIIILVIGEMSNKDSPW-RKFTQTFFLAEQPNG---YFVLNDIFR 156          
BLAST of EWM25128.1 vs. NCBI_GenBank
Match: gi|1045441293|gb|OCF35440.1| (RAN protein binding protein [Kwoniella heveanensis BCC8398])

HSP 1 Score: 95.9005 bits (237), Expect = 6.888e-18
Identity = 54/134 (40.30%), Postives = 76/134 (56.72%), Query Frame = 0
Query:   29 SSYVKKPTPEKVGRRFVLTYYPVMSKSAEDLIKFYKEDSCFSHVPETEEGQDSKAAVGLEEIRARIEALNLGGAVVDIRSVDVQPSKDGAVLVLVQGLMRRRSAPAPSAFVQTFFLAQQENNEAHYYLLNDVFR 162
            S+   K  P  VG +FV  YY  ++K    L  FY + S F H    EEG++S+ A+G +EI  RI A+      V I S+D Q S +G +++LV G M  + +P    F QTFFLA+Q N    Y++LND+FR
Sbjct:   30 SAQTSKIQPNDVGWQFVPQYYNFVNKQPHRLHCFYNKRSTFIH---GEEGEESQIALGQQEIHDRITAIGYDECKVYIHSIDSQSSANGGIIILVIGEMSNKDSPW-RKFTQTFFLAEQPNG---YFVLNDIFR 156          
BLAST of EWM25128.1 vs. NCBI_GenBank
Match: gi|751014902|gb|KIK56640.1| (hypothetical protein GYMLUDRAFT_61887 [Gymnopus luxurians FD-317 M1])

HSP 1 Score: 95.5153 bits (236), Expect = 7.280e-18
Identity = 53/126 (42.06%), Postives = 71/126 (56.35%), Query Frame = 0
Query:   37 PEKVGRRFVLTYYPVMSKSAEDLIKFYKEDSCFSHVPETEEGQDSKAAVGLEEIRARIEALNLGGAVVDIRSVDVQPSKDGAVLVLVQGLMRRRSAPAPSAFVQTFFLAQQENNEAHYYLLNDVFR 162
            P +VG +FV  YY  ++K  E L  FY + S F H     EG+D K   G +EI A+I +L      + I SVD Q S DG +++ V G M   + P    FVQTFFLA+Q N    Y++LND+FR
Sbjct:   13 PSEVGWQFVPQYYNFVNKEPERLHCFYNKRSTFIH---GSEGEDGKTCHGQQEIHAQITSLGFQDCKIFIHSVDAQSSADGGIIIQVIGEMSNSNGPW-RKFVQTFFLAEQPNG---YFVLNDIFR 131          
BLAST of EWM25128.1 vs. NCBI_GenBank
Match: gi|597908898|ref|XP_007301748.1| (hypothetical protein STEHIDRAFT_137985 [Stereum hirsutum FP-91666 SS1] >gi|389747608|gb|EIM88786.1| hypothetical protein STEHIDRAFT_137985 [Stereum hirsutum FP-91666 SS1])

HSP 1 Score: 94.7449 bits (234), Expect = 1.276e-17
Identity = 53/127 (41.73%), Postives = 70/127 (55.12%), Query Frame = 0
Query:   36 TPEKVGRRFVLTYYPVMSKSAEDLIKFYKEDSCFSHVPETEEGQDSKAAVGLEEIRARIEALNLGGAVVDIRSVDVQPSKDGAVLVLVQGLMRRRSAPAPSAFVQTFFLAQQENNEAHYYLLNDVFR 162
             P +VG +FV  YY  ++K    L  FY + S F H     EG+D K A G +EI  RI ++      V I SVD Q S +G +++ V G M  R  P    FVQTFFLA+Q N    Y++LND+FR
Sbjct:   16 VPSEVGWQFVPQYYTFVNKQPNRLHCFYTKSSTFIH---GTEGEDGKPAFGQQEIHNRITSIGFEDCKVFIHSVDAQSSANGGIIIQVIGEMSNRGEPW-RKFVQTFFLAEQPNG---YFVLNDIFR 135          
BLAST of EWM25128.1 vs. NCBI_GenBank
Match: gi|1102544778|ref|XP_019042751.1| (hypothetical protein I302_08458 [Kwoniella bestiolae CBS 10118] >gi|1045427321|gb|OCF21681.1| hypothetical protein I302_08458 [Kwoniella bestiolae CBS 10118])

HSP 1 Score: 94.7449 bits (234), Expect = 1.412e-17
Identity = 55/142 (38.73%), Postives = 77/142 (54.23%), Query Frame = 0
Query:   21 SSSKCVTNSSYVKKPTPEKVGRRFVLTYYPVMSKSAEDLIKFYKEDSCFSHVPETEEGQDSKAAVGLEEIRARIEALNLGGAVVDIRSVDVQPSKDGAVLVLVQGLMRRRSAPAPSAFVQTFFLAQQENNEAHYYLLNDVFR 162
            +S+     S+   K  P  VG +FV  YY  ++K    L  FY + S F H    EEG++S+ A+G +EI  RI A+      V I S+D Q S +G +++LV G M     P    F QTFFLA+Q N    Y++LND+FR
Sbjct:   18 ASTPAAAGSAQQNKIQPNDVGWQFVPQYYNFVNKQPHRLHCFYNKRSTFIH---GEEGEESQVALGQQEIHDRIVAIGYNECKVYIHSIDSQSSANGGIIILVIGEMSNNHQPW-RKFTQTFFLAEQPNG---YFVLNDIFR 152          
BLAST of EWM25128.1 vs. NCBI_GenBank
Match: gi|406699517|gb|EKD02719.1| (RAN protein binding protein [Trichosporon asahii var. asahii CBS 8904])

HSP 1 Score: 94.7449 bits (234), Expect = 1.434e-17
Identity = 56/141 (39.72%), Postives = 75/141 (53.19%), Query Frame = 0
Query:   22 SSKCVTNSSYVKKPTPEKVGRRFVLTYYPVMSKSAEDLIKFYKEDSCFSHVPETEEGQDSKAAVGLEEIRARIEALNLGGAVVDIRSVDVQPSKDGAVLVLVQGLMRRRSAPAPSAFVQTFFLAQQENNEAHYYLLNDVFR 162
            S+   T+S    K +P  VG +FV  YY  ++K    L  FY + S F H    EEG D+  A+G +EI  RI  +      V I S+D Q S  G +++ V G M   + P    FVQTFFLA+Q N    YY+LND+FR
Sbjct:   23 SAAASTSSQDASKISPSDVGWQFVPQYYNFVNKQPHRLHCFYNKRSTFIH---GEEGDDATPALGQQEIHDRITKIGYDQCKVFINSIDSQSSAGGGIIIQVLGEMSNANKPW-RKFVQTFFLAEQPNG---YYVLNDIFR 156          
BLAST of EWM25128.1 vs. NCBI_GenBank
Match: gi|930416885|ref|XP_014182715.1| (RAN protein binding protein [Trichosporon asahii var. asahii CBS 2479] >gi|401887782|gb|EJT51760.1| RAN protein binding protein [Trichosporon asahii var. asahii CBS 2479])

HSP 1 Score: 94.7449 bits (234), Expect = 1.500e-17
Identity = 56/141 (39.72%), Postives = 75/141 (53.19%), Query Frame = 0
Query:   22 SSKCVTNSSYVKKPTPEKVGRRFVLTYYPVMSKSAEDLIKFYKEDSCFSHVPETEEGQDSKAAVGLEEIRARIEALNLGGAVVDIRSVDVQPSKDGAVLVLVQGLMRRRSAPAPSAFVQTFFLAQQENNEAHYYLLNDVFR 162
            S+   T+S    K +P  VG +FV  YY  ++K    L  FY + S F H    EEG D+  A+G +EI  RI  +      V I S+D Q S  G +++ V G M   + P    FVQTFFLA+Q N    YY+LND+FR
Sbjct:   23 SAAASTSSQDASKISPSDVGWQFVPQYYNFVNKQPHRLHCFYNKRSTFIH---GEEGDDATPALGQQEIHDRITKIGYDQCKVFINSIDSQSSAGGGIIIQVLGEMSNANKPW-RKFVQTFFLAEQPNG---YYVLNDIFR 156          
The following BLAST results are available for this feature:
BLAST of EWM25128.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106766|gb|EWM25128.1|0.000e+0100.00ran protein binding protein [Nannochloropsis gadit... [more]
gi|553196236|ref|XP_005856296.1|1.116e-17199.17ran protein binding protein, partial [Nannochlorop... [more]
gi|752368261|gb|KIO26058.1|1.987e-2042.22hypothetical protein M407DRAFT_243864 [Tulasnella ... [more]
gi|1045447472|gb|OCF41210.1|6.825e-1840.30RAN protein binding protein [Kwoniella heveanensis... [more]
gi|1045441293|gb|OCF35440.1|6.888e-1840.30RAN protein binding protein [Kwoniella heveanensis... [more]
gi|751014902|gb|KIK56640.1|7.280e-1842.06hypothetical protein GYMLUDRAFT_61887 [Gymnopus lu... [more]
gi|597908898|ref|XP_007301748.1|1.276e-1741.73hypothetical protein STEHIDRAFT_137985 [Stereum hi... [more]
gi|1102544778|ref|XP_019042751.1|1.412e-1738.73hypothetical protein I302_08458 [Kwoniella bestiol... [more]
gi|406699517|gb|EKD02719.1|1.434e-1739.72RAN protein binding protein [Trichosporon asahii v... [more]
gi|930416885|ref|XP_014182715.1|1.500e-1739.72RAN protein binding protein [Trichosporon asahii v... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5590rna5590Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications