EWM25107.1, cds5574 (CDS) Nannochloropsis gaditana

Overview
NameEWM25107.1
Unique Namecds5574
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:350182..350265 +
Alignment locationCM002466.1:350347..350455 +
Alignment locationCM002466.1:350528..350618 +
Alignment locationCM002466.1:350723..350810 +
Alignment locationCM002466.1:350886..350926 +
Alignment locationCM002466.1:351003..351106 +
Alignment locationCM002466.1:351211..351584 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25107.1
ProductNLI interacting factor
Orig transcript idgnl|cribi|Naga_100016g17.2916.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:350182..350265 +
CM002466.1supercontigCM002466.1:350347..350455 +
CM002466.1supercontigCM002466.1:350528..350618 +
CM002466.1supercontigCM002466.1:350723..350810 +
CM002466.1supercontigCM002466.1:350886..350926 +
CM002466.1supercontigCM002466.1:351003..351106 +
CM002466.1supercontigCM002466.1:351211..351584 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR023214HAD-like_dom
IPR004274NIF
Homology
BLAST of EWM25107.1 vs. NCBI_GenBank
Match: gi|585106745|gb|EWM25107.1| (NLI interacting factor [Nannochloropsis gaditana])

HSP 1 Score: 602.823 bits (1553), Expect = 0.000e+0
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0
Query:    1 MSHDSGRDRRGGGQRENIEIALLKLEVERLRSLVPTYRRRPKLLILDLNGLLVHRVFVGEGPRADAEGALPRVTTTWCLNSCLVYKRPYVKDFLRFCLDNFFVGVWTTASAINATPLLKGLLPEEDVARLAFIWDGKRCTYNGETDPAKPGKPIAFKELRRLWESKDVAGLFGPSNTLMIDDSRYKASLNPPHTAIHPPAWDDPDAHASDDALGPLGNIRLYLQALLDSEVSVPDFVSARPFEAFQGARAATRLVSDASAMLDEGNSVRESESCAPLNEEDEDGEDEIVLAPGVSR 296
            MSHDSGRDRRGGGQRENIEIALLKLEVERLRSLVPTYRRRPKLLILDLNGLLVHRVFVGEGPRADAEGALPRVTTTWCLNSCLVYKRPYVKDFLRFCLDNFFVGVWTTASAINATPLLKGLLPEEDVARLAFIWDGKRCTYNGETDPAKPGKPIAFKELRRLWESKDVAGLFGPSNTLMIDDSRYKASLNPPHTAIHPPAWDDPDAHASDDALGPLGNIRLYLQALLDSEVSVPDFVSARPFEAFQGARAATRLVSDASAMLDEGNSVRESESCAPLNEEDEDGEDEIVLAPGVSR
Sbjct:    1 MSHDSGRDRRGGGQRENIEIALLKLEVERLRSLVPTYRRRPKLLILDLNGLLVHRVFVGEGPRADAEGALPRVTTTWCLNSCLVYKRPYVKDFLRFCLDNFFVGVWTTASAINATPLLKGLLPEEDVARLAFIWDGKRCTYNGETDPAKPGKPIAFKELRRLWESKDVAGLFGPSNTLMIDDSRYKASLNPPHTAIHPPAWDDPDAHASDDALGPLGNIRLYLQALLDSEVSVPDFVSARPFEAFQGARAATRLVSDASAMLDEGNSVRESESCAPLNEEDEDGEDEIVLAPGVSR 296          
BLAST of EWM25107.1 vs. NCBI_GenBank
Match: gi|553178208|ref|XP_005852529.1| (hypothetical protein NGA_0707200 [Nannochloropsis gaditana CCMP526] >gi|422296003|gb|EKU23302.1| hypothetical protein NGA_0707200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 261.922 bits (668), Expect = 1.190e-85
Identity = 136/175 (77.71%), Postives = 136/175 (77.71%), Query Frame = 0
Query:   40 RPKLLILDLNGLLVHRVFVGEGPRADAEGALPRVTTTWCLNSCLVYKRPYVKDFLRFCLDNFFVGVWTTASAINATPLLKGLLPEEDVARLAFIWDGKRCTYNGETDPAKPGKPIAFKELRRLWESKDVAGLFGPSNTLMIDDSRYKASLNPPHTAIHPPAWDDPDAHASDDALG 214
            RPKLLILDLNGLLVHRVFVGEGPRA                                       GVWTTASAINATPLLKGLLPEEDVARLAFIWDGKRCTYNGETDPAKPGKPIAFKELRRLWESKDVAGLFGPSNTLMIDDSRYKASLNPPHTAIHPPAWDDPDAHASDDALG
Sbjct:    4 RPKLLILDLNGLLVHRVFVGEGPRA---------------------------------------GVWTTASAINATPLLKGLLPEEDVARLAFIWDGKRCTYNGETDPAKPGKPIAFKELRRLWESKDVAGLFGPSNTLMIDDSRYKASLNPPHTAIHPPAWDDPDAHASDDALG 139          
BLAST of EWM25107.1 vs. NCBI_GenBank
Match: gi|703119148|ref|XP_010101794.1| (Uncharacterized FCP1-like domain-containing protein [Morus notabilis] >gi|587901374|gb|EXB89649.1| Uncharacterized FCP1-like domain-containing protein [Morus notabilis])

HSP 1 Score: 151.754 bits (382), Expect = 7.465e-41
Identity = 88/215 (40.93%), Postives = 127/215 (59.07%), Query Frame = 0
Query:   34 VPTYRRRPKLLILDLNGLLVHRVFVGEGPRADAEGALPRVTTTWCLNSCLVYKRPYVKDFLRFCLDNFFVGVWTTASAINATPLLKGLLPEEDVARLAFIWDGKRCTYNGETDPAKPGKPIAFKELRRLWESKDV-----AGLFGPSNTLMIDDSRYKASLNPPHTAIHPPAWDDPDAHASDDA-LGPLGNIRLYLQALLDSEVSVPDFVSARPF 242
            + + + + KLL+LD+NGLL  ++F  +  +     ++P +       S LVYKRPY  +F+ FCL+ F VG+W+TA   N   +L  ++ E   ++L F+WD   CT +G     K GKPI  K+L++LW++ +       G F  SNTL+IDD  YKA LNP H+AI P   D+  A   DDA LGP G +RLYL+ L D++ +V  FV  RPF
Sbjct:   32 LQSVKIKKKLLVLDVNGLLCQKIFRYDKAKLPNSSSVPVIEC----GSFLVYKRPYCDEFMNFCLERFEVGIWSTAREGNLNSVLDCIM-EGLKSKLLFVWDQSHCTSSGFYTLEKKGKPIFLKDLKKLWKNINAILPESKGQFSKSNTLLIDDKPYKALLNPLHSAIFP---DEYKADNVDDASLGPKGELRLYLEELADAD-NVTCFVEERPF 237          
BLAST of EWM25107.1 vs. NCBI_GenBank
Match: gi|971509621|dbj|GAQ88573.1| (hypothetical protein KFL_004410010 [Klebsormidium nitens])

HSP 1 Score: 151.754 bits (382), Expect = 9.847e-38
Identity = 84/201 (41.79%), Postives = 117/201 (58.21%), Query Frame = 0
Query:   42 KLLILDLNGLLVHRVFVGEGPRADAEGALPRVTTTWCLNSCLVYKRPYVKDFLRFCLDNFFVGVWTTASAINATPLLKGLLPEEDVARLAFIWDGKRCTYNGETDPAKPGKPIAFKELRRLWESKDVAGLFGPSNTLMIDDSRYKASLNPPHTAIHPPAWDDPDAHASDDALGPLGNIRLYLQALLDSEVSVPDFVSARPF 242
            KLLILD+NG L+  +F  +      +G          +N+ L+Y RP+ +DF++FCLDNF VGVW++A   N   L + +  E  V++LAFIW   +CT  G   P    KPI  KELRR+WES   +G++GPSNTL+IDDS YKA  NPP+T + P  +         D L P G IR +L+ +  +   V ++V A PF
Sbjct:   86 KLLILDVNGFLIDTMFKFD------KGKPTLREHDGTVNNFLIYNRPHCEDFIKFCLDNFVVGVWSSARRHNVEGLTRYIFGEA-VSQLAFIWGQDQCTNTGFMHPENRNKPIFLKELRRVWESPPFSGVYGPSNTLLIDDSAYKALRNPPYTGVFPKTYVADGRE--QDCLAPGGRIRSFLEGVHVA-ADVREYVKAHPF 276          
BLAST of EWM25107.1 vs. NCBI_GenBank
Match: gi|566206315|ref|XP_006374416.1| (hypothetical protein POPTR_0015s07000g [Populus trichocarpa] >gi|550322178|gb|ERP52213.1| hypothetical protein POPTR_0015s07000g [Populus trichocarpa])

HSP 1 Score: 146.362 bits (368), Expect = 6.035e-37
Identity = 88/223 (39.46%), Postives = 127/223 (56.95%), Query Frame = 0
Query:   36 TYRRRPKLLILDLNGLLVHRV-FVGEGPRADAEGALPRVTTTWCLNSCLVYKRPYVKDFLRFCLDNFFVGVWTTASAINATPLLKGLLPEEDVARLAFIWDGKRCTYNGETDPAKPGKPIAFKELRRLWESKDVA-----GLFGPSNTLMIDDSRYKASLNPPHTAIHPPAWDDPDAHASDDALGPLGNIRLYLQALLDSEVSVPDFVSARPFEAFQGARAAT 252
            T R   KLLILD+NGLL   V +V  G +A+    +   +  +C      +KRP+  DFLRFC + F VGVW++ +  N  PL++ L  +    +L F WD   CT  G T      KP+  KEL+++WE  +       G +  SNTL++DDS YKA  NP HTAI PP++   D   +D +LGP G++R+YL+ L ++E +V ++V+  PF    G RA T
Sbjct:  222 TGRVTKKLLILDVNGLLADIVSYVSAGYQANI--VVSGKSGEYCF-----FKRPFCDDFLRFCFEKFDVGVWSSRTKRNVNPLIEFLFGDSR-HKLLFCWDQSHCTDTGFTTVENRSKPLFLKELKKIWEYLESTLQLNKGEYDESNTLLLDDSPYKALCNPVHTAIFPPSYGYRD--LADSSLGPEGDLRVYLERLAEAE-NVQEYVAQHPF----GQRAIT 429          
BLAST of EWM25107.1 vs. NCBI_GenBank
Match: gi|571562123|ref|XP_006605240.1| (PREDICTED: uncharacterized protein LOC100809489 [Glycine max] >gi|734316784|gb|KHN02266.1| Putative FCP1 likey domain-containing protein [Glycine soja] >gi|947046489|gb|KRG96118.1| hypothetical protein GLYMA_19G190500 [Glycine max])

HSP 1 Score: 139.428 bits (350), Expect = 3.471e-36
Identity = 88/223 (39.46%), Postives = 130/223 (58.30%), Query Frame = 0
Query:   23 LKLEVERLRSLVPTYRRRPKLLILDLNGLL---VHRVFVGEGPRADAEGALPRVTTTWCLNSCLVYKRPYVKDFLRFCLDNFFVGVWTTASAINATPLLKGLLPEEDVARLAFIWDGKRCTYNGETDPAKPGKPIAFKELRRLWESKDVAGLFGPSNTLMIDDSRYKASLNPPHTAIHPPAWDDPDAHASDDALGPLGNIRLYLQALLDSEVSVPDFVSARPF 242
            L L +E+L +L P    R KLLI++LNGLL   VHR    E P++ A     R          LV+KRP+ ++F++FCL+ F VG+W++A   N    L   +     ++L F+WD ++CT +G     K  KP+ FKEL+++WE+    G +  SNTL+IDD  YKA LNPP+TA+ P ++  PD +A D AL P G +  YL+ +++S   V  +V   PF
Sbjct:   28 LNLHLEKL-NLGP----RKKLLIMNLNGLLLLRVHRCSKSEIPKSRAADGHYR--------GYLVFKRPFSQEFMKFCLERFEVGIWSSAMEHNIDAALNYAIGSLR-SKLLFVWDQRQCTNSGFKSLEKASKPLFFKELKKVWETVKKGGPYSASNTLLIDDRPYKAFLNPPNTAVFPQSY-KPDNYA-DRALDPKGLMCTYLKGVMESP-DVQSYVKDHPF 233          
BLAST of EWM25107.1 vs. NCBI_GenBank
Match: gi|743927200|ref|XP_011007778.1| (PREDICTED: probable C-terminal domain small phosphatase isoform X2 [Populus euphratica])

HSP 1 Score: 140.198 bits (352), Expect = 1.365e-35
Identity = 86/221 (38.91%), Postives = 123/221 (55.66%), Query Frame = 0
Query:   38 RRRPKLLILDLNGLLVHRV-FVGEGPRADAEGALPRVTTTWCLNSCLVYKRPYVKDFLRFCLDNFFVGVWTTASAINATPLLKGLLPEEDVARLAFIWDGKRCTYNGETDPAKPGKPIAFKELRRLWESKDVA-----GLFGPSNTLMIDDSRYKASLNPPHTAIHPPAWDDPDAHASDDALGPLGNIRLYLQALLDSEVSVPDFVSARPFEAFQGARAAT 252
            R   KLLILD+NGLL   V +V  G +A+             ++   V+KRP+  DFLRFC + F VGVW++ +  N  PL+  L  +    +L F WD   CT  G T      KP+  KEL+++WE  +       G +  SNTL++DDS YKA  NP HTAI P ++   D   +D +LGP G++R+YL+ L ++E +V ++V+  PF    G RA T
Sbjct:  108 RVTKKLLILDVNGLLADIVSYVSAGYQANI-----------VVSGKSVFKRPFCDDFLRFCFEKFDVGVWSSRTKRNVNPLIDFLFGDSR-HKLLFCWDQSHCTDTGFTTVENRSKPLFLKELKKIWEYLESTLQLNKGEYDESNTLLLDDSPYKALCNPVHTAIFPHSYGYRD--IADSSLGPEGDLRVYLERLAEAE-NVQEYVAQHPF----GQRAIT 309          
BLAST of EWM25107.1 vs. NCBI_GenBank
Match: gi|1179531446|ref|XP_020686838.1| (uncharacterized protein LOC110102722 isoform X4 [Dendrobium catenatum])

HSP 1 Score: 140.198 bits (352), Expect = 1.500e-35
Identity = 85/234 (36.32%), Postives = 125/234 (53.42%), Query Frame = 0
Query:   40 RPKLLILDLNGLLVHRVFVGEGPRADAEGALPRVTTTWCLNSCLVYKRPYVKDFLRFCLDNFFVGVWTTASAINATPLLKGLLPEEDVARLAFIWDGKRCTYNGETDPAKPGKPIAFKELRRLWESKDVA-----GLFGPSNTLMIDDSRYKASLNPPHTAIHPPAWDDPDAHASDDALGPLGNIRLYLQALLDSEVSVPDFVSARPFEAFQGARAATRLVSDASAMLDEGNSV 268
            R KLL+LDLNG+L   VF   G        LP       +N   V+KRP++ DFL FC + F VG+W++ +  N   ++  ++ +    RL F WD  +CT  G        KP+  KEL +LW+ ++ +     G + PSNTL++DDS YKA  NPPHTAI P  +D  D    D+ LGP G IRLYL+++  ++  V   V    F   Q   +  ++ S    ++D+ NS+
Sbjct:  130 RKKLLVLDLNGILCDVVFGSHG------SCLPYKR----VNMRSVFKRPFLDDFLTFCFERFVVGIWSSRNKNNIIGVINYIMGDSK-DRLLFCWDQSKCTVTGFNTIENSHKPLVLKELIKLWDKEEASLPWDKGEYSPSNTLLVDDSPYKALCNPPHTAIFPFPYDFRDER--DNCLGPGGAIRLYLESIASAD-DVQKHVKKHSFGQ-QAITSKDKMWSFYEKIIDKNNSM 348          
BLAST of EWM25107.1 vs. NCBI_GenBank
Match: gi|566192657|ref|XP_006378831.1| (hypothetical protein POPTR_0010s25040g [Populus trichocarpa] >gi|550330560|gb|ERP56628.1| hypothetical protein POPTR_0010s25040g [Populus trichocarpa])

HSP 1 Score: 137.887 bits (346), Expect = 1.546e-35
Identity = 90/225 (40.00%), Postives = 125/225 (55.56%), Query Frame = 0
Query:   24 KLEVERLRSLVPTYRRRPKLLILDLNGLLVHRVFVGEGPRADA-EGALPRVTTTWCLNSCLVYKRPYVKDFLRFCLDNFFVGVWTTASAINATPLLKGLLPEEDVARLAFIWDGKRCTYNGETDPAKPGKPIAFKELRRLWESKDV-----AGLFGPSNTLMIDDSRYKASLNPPHTAIHPPAWDDPDAHASDDALGPLGNIRLYLQALLDSEVSVPDFVSARPF 242
            ++E+E+L SL P   +  KLL+LDL G+L  RVF     RA+  +   P   +        VYKRP+ ++F+RFCL+ F VG+W++A   N    L  ++ E    RL F+WD   CT +G +      KPI FKEL++LW+++        G +  SNT++IDD  YKA LNPP TAI P  +  PD    D  LGP G +RLYL  L  +   VP +V   PF
Sbjct:   22 EIELEKL-SLGPDGSK--KLLVLDLAGVLCDRVF--HKNRANIPDNRTPDAASGSFFGKFSVYKRPFCEEFVRFCLERFDVGIWSSARRTNLETALDCVIGELK-GRLLFVWDQDDCTDSGFSTKENKNKPIFFKELKKLWDNESSNLPWRKGQYSSSNTILIDDKPYKALLNPPSTAIFPTEY-KPD-QLDDATLGPNGELRLYLDGLARA-ADVPGYVKEHPF 237          
BLAST of EWM25107.1 vs. NCBI_GenBank
Match: gi|566192655|ref|XP_006378830.1| (hypothetical protein POPTR_0010s25040g [Populus trichocarpa] >gi|118481927|gb|ABK92897.1| unknown [Populus trichocarpa] >gi|550330559|gb|ERP56627.1| hypothetical protein POPTR_0010s25040g [Populus trichocarpa])

HSP 1 Score: 137.117 bits (344), Expect = 3.233e-35
Identity = 91/225 (40.44%), Postives = 126/225 (56.00%), Query Frame = 0
Query:   24 KLEVERLRSLVPTYRRRPKLLILDLNGLLVHRVFVGEGPRADA-EGALPRVTTTWCLNSCLVYKRPYVKDFLRFCLDNFFVGVWTTASAINATPLLKGLLPEEDVARLAFIWDGKRCTYNGETDPAKPGKPIAFKELRRLWESKDV-----AGLFGPSNTLMIDDSRYKASLNPPHTAIHPPAWDDPDAHASDDALGPLGNIRLYLQALLDSEVSVPDFVSARPF 242
            ++E+E+L SL P   +  KLL+LDL G+L  RVF     RA+  +   P   +     S  VYKRP+ ++F+RFCL+ F VG+W++A   N    L  ++ E    RL F+WD   CT +G +      KPI FKEL++LW+++        G +  SNT++IDD  YKA LNPP TAI P  +  PD    D  LGP G +RLYL  L  +   VP +V   PF
Sbjct:   22 EIELEKL-SLGPDGSK--KLLVLDLAGVLCDRVF--HKNRANIPDNRTPDAAS----GSFFVYKRPFCEEFVRFCLERFDVGIWSSARRTNLETALDCVIGELK-GRLLFVWDQDDCTDSGFSTKENKNKPIFFKELKKLWDNESSNLPWRKGQYSSSNTILIDDKPYKALLNPPSTAIFPTEY-KPD-QLDDATLGPNGELRLYLDGLARA-ADVPGYVKEHPF 233          
The following BLAST results are available for this feature:
BLAST of EWM25107.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106745|gb|EWM25107.1|0.000e+0100.00NLI interacting factor [Nannochloropsis gaditana][more]
gi|553178208|ref|XP_005852529.1|1.190e-8577.71hypothetical protein NGA_0707200 [Nannochloropsis ... [more]
gi|703119148|ref|XP_010101794.1|7.465e-4140.93Uncharacterized FCP1-like domain-containing protei... [more]
gi|971509621|dbj|GAQ88573.1|9.847e-3841.79hypothetical protein KFL_004410010 [Klebsormidium ... [more]
gi|566206315|ref|XP_006374416.1|6.035e-3739.46hypothetical protein POPTR_0015s07000g [Populus tr... [more]
gi|571562123|ref|XP_006605240.1|3.471e-3639.46PREDICTED: uncharacterized protein LOC100809489 [G... [more]
gi|743927200|ref|XP_011007778.1|1.365e-3538.91PREDICTED: probable C-terminal domain small phosph... [more]
gi|1179531446|ref|XP_020686838.1|1.500e-3536.32uncharacterized protein LOC110102722 isoform X4 [D... [more]
gi|566192657|ref|XP_006378831.1|1.546e-3540.00hypothetical protein POPTR_0010s25040g [Populus tr... [more]
gi|566192655|ref|XP_006378830.1|3.233e-3540.44hypothetical protein POPTR_0010s25040g [Populus tr... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5588rna5588Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications