EWM25180.1, cds5493 (CDS) Nannochloropsis gaditana

Overview
NameEWM25180.1
Unique Namecds5493
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:144296..145234 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25180.1
Production transport protein
Orig transcript idgnl|cribi|Naga_100527g3.3197.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:144296..145234 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006811ion transport
GO:0055085transmembrane transport
GO:0006813potassium ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005821Ion_trans_dom
IPR003091K_chnl
Homology
BLAST of EWM25180.1 vs. NCBI_GenBank
Match: gi|585106840|gb|EWM25180.1| (ion transport protein [Nannochloropsis gaditana])

HSP 1 Score: 631.713 bits (1628), Expect = 0.000e+0
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0
Query:    1 MKAPGKPFHARFANVPPSVNTPNSTTTSTTSINYDVASSPVRLNAFASRLATSSTVASSSKRIAFLPFVQRLERVIFQGIPPTYPLRAKMKITLDTTSFGMAWDIFQSLASLLSCITYVASTYHYIFPLFLQWTLTIIFSCELLLRYYVSENRWAHTFEFFTLIDLLTVLPMYIQFIVAHTGTPMAGHRSLFFLRFARTMNIMRIVRTFRFGGVRRMPKSTRQCSILGLTVVSLVFLSAGLVQLVERDLTFGRAVYFMIVTMSTVGYGDIHPTRYADFLLPPARPPSLPLFYSSFLMTSVQYSFTSSHHLSL 312
            MKAPGKPFHARFANVPPSVNTPNSTTTSTTSINYDVASSPVRLNAFASRLATSSTVASSSKRIAFLPFVQRLERVIFQGIPPTYPLRAKMKITLDTTSFGMAWDIFQSLASLLSCITYVASTYHYIFPLFLQWTLTIIFSCELLLRYYVSENRWAHTFEFFTLIDLLTVLPMYIQFIVAHTGTPMAGHRSLFFLRFARTMNIMRIVRTFRFGGVRRMPKSTRQCSILGLTVVSLVFLSAGLVQLVERDLTFGRAVYFMIVTMSTVGYGDIHPTRYADFLLPPARPPSLPLFYSSFLMTSVQYSFTSSHHLSL
Sbjct:    1 MKAPGKPFHARFANVPPSVNTPNSTTTSTTSINYDVASSPVRLNAFASRLATSSTVASSSKRIAFLPFVQRLERVIFQGIPPTYPLRAKMKITLDTTSFGMAWDIFQSLASLLSCITYVASTYHYIFPLFLQWTLTIIFSCELLLRYYVSENRWAHTFEFFTLIDLLTVLPMYIQFIVAHTGTPMAGHRSLFFLRFARTMNIMRIVRTFRFGGVRRMPKSTRQCSILGLTVVSLVFLSAGLVQLVERDLTFGRAVYFMIVTMSTVGYGDIHPTRYADFLLPPARPPSLPLFYSSFLMTSVQYSFTSSHHLSL 312          
BLAST of EWM25180.1 vs. NCBI_GenBank
Match: gi|695446461|ref|XP_009534487.1| (hypothetical protein PHYSODRAFT_521894 [Phytophthora sojae] >gi|348669804|gb|EGZ09626.1| hypothetical protein PHYSODRAFT_521894 [Phytophthora sojae])

HSP 1 Score: 137.502 bits (345), Expect = 1.683e-32
Identity = 79/207 (38.16%), Postives = 115/207 (55.56%), Query Frame = 0
Query:   76 IFQGIPPTYPLRAKMKITLDTTSFGMAWDIFQSLASLLSCITYVASTY----HYIFPLFLQWTLTIIFSCELLLRYYVSENRWAHTFEFFTLIDLLTVLPMYIQFIVAHTGTPMAGHRSLFFLRFARTMNIMRIVRTFRFGGVRRMPKSTRQCSILGLTVVSLVFLSAGLVQLVER------DLTFGRAVYFMIVTMSTVGYGDIHP 272
            +FQGIP  YPLR ++++ L  +  G AW+IFQ++ +LL   TYV  TY        P F   T  I+F+ +  L  Y  ENRW   F    ++D LT+ P     +V   GT     +SL F+RF R M ++R++R  R  G + +    +Q   + L    L+F++AG+   VE       DLTFG A+YF++VT++TVGYGDI P
Sbjct:   30 VFQGIPSHYPLRTRVRMKLKFSKLGTAWEIFQTVFALLVSATYVVQTYEPHDEGQMPTF-DTTSMIVFASDYFLNLYCCENRWQFVFSVNGIMDALTIFPA----LVDQFGTGYG--KSLPFIRFVRVMRMLRLIRVVRVAGSQTVSAVQKQVYTIILLTTCLIFVAAGIFHAVEGNEGAQPDLTFGEALYFIVVTIATVGYGDIVP 229          
BLAST of EWM25180.1 vs. NCBI_GenBank
Match: gi|669137292|ref|XP_008604214.1| (hypothetical protein SDRG_00512 [Saprolegnia diclina VS20] >gi|530744549|gb|EQC42791.1| hypothetical protein SDRG_00512 [Saprolegnia diclina VS20])

HSP 1 Score: 136.732 bits (343), Expect = 3.147e-32
Identity = 78/210 (37.14%), Postives = 119/210 (56.67%), Query Frame = 0
Query:   77 FQGIPPTYPLRAKMKITLDTTSFGMAWDIFQSLASLLSCITYVASTYHYIFPL-FLQWTLTIIFSCELLLRYYVSENRWAHTFEFFTLIDLLTVLPMYIQFIVAHTGTPMAGHR-----SLFFLRFARTMNIMRIVRTFRFGGVRRMPKSTRQCSILGLTVVSLVFLSAGLVQLVE---RD-----LTFGRAVYFMIVTMSTVGYGDIHP 272
            F GIP  + LR +++I L+ +S G AWD+FQ++ SL++C  Y+  +Y+    L  L  T   +F+ + L+R+Y +ENR    F F  +ID+L ++P    F      TP +  R     +  F RF R + +M+ ++  R     R+    +Q + LGL V S++F+SA L Q VE   RD     L+ G A YF++VT+STVGYGDI P
Sbjct:   42 FHGIPKGFSLRTRVRIKLENSSVGQAWDLFQTMTSLVACGLYIVQSYNGEVRLSALDMTFITVFAADYLMRFYCAENRILFPFTFNAIIDVLAIIPSLYDFTTT-ASTPSSAPRTHAQPTFAFFRFVRVLRVMKAIQLSRTSSHHRISAVQKQLAGLGLLVTSILFISACLFQTVENYARDINDEQLSLGDAFYFILVTISTVGYGDIAP 250          
BLAST of EWM25180.1 vs. NCBI_GenBank
Match: gi|813155563|ref|XP_012201376.1| (hypothetical protein SPRG_07194 [Saprolegnia parasitica CBS 223.65] >gi|641533954|gb|KDO27920.1| hypothetical protein SPRG_07194 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 135.191 bits (339), Expect = 1.070e-31
Identity = 74/206 (35.92%), Postives = 117/206 (56.80%), Query Frame = 0
Query:   77 FQGIPPTYPLRAKMKITLDTTSFGMAWDIFQSLASLLSCITYVASTYH-YIFPLFLQWTLTIIFSCELLLRYYVSENRWAHTFEFFTLIDLLTVLPMYIQFIVAHTGTPMAGHRSLF-FLRFARTMNIMRIVRTFRFGGVRRMPKSTRQCSILGLTVVSLVFLSAGLVQLVE---RD-----LTFGRAVYFMIVTMSTVGYGDIHP 272
            F GIP  + LR +++I L+ +  G AWD+FQ++ SL++C  Y+  +Y+  +    L  T   +F+ + L+R+Y +E+R    F F  +ID+L ++P    F      +P    +  F F RF R + +M+ ++  R    RR+    +Q + L L V S++F+SA L Q VE   RD     L+ G A YF++VT+STVGYGDI P
Sbjct:   42 FHGIPKGFSLRTRVRIKLENSPVGQAWDLFQTITSLVACGLYIVQSYNDQVRSSALDMTFIAVFAADYLIRFYCAEDRVLFPFTFNAIIDVLAIIPSLYDFTTTSLASPRTHAQPTFAFFRFVRVLRVMKAIQLSRTSSHRRISAVQKQLAGLALLVTSILFISACLFQTVENYARDMDDEQLSLGDAFYFILVTISTVGYGDIAP 247          
BLAST of EWM25180.1 vs. NCBI_GenBank
Match: gi|673046383|ref|XP_008877152.1| (hypothetical protein H310_12025 [Aphanomyces invadans] >gi|574467366|gb|ETV94390.1| hypothetical protein H310_12025 [Aphanomyces invadans])

HSP 1 Score: 135.191 bits (339), Expect = 1.071e-31
Identity = 81/216 (37.50%), Postives = 121/216 (56.02%), Query Frame = 0
Query:   76 IFQGIPPTYPLRAKMKITLDTTSFGMAWDIFQSLASLLSCITYVASTYH--YIFPLFLQWTLTIIFSCELLLRYYVSENRWAHTFEFFTLIDLLTVLPMYIQFIVAHTGTPMAGHRSLF-FLRFARTMNIMRIVRTFRFGGVRRMPKSTRQCSILGLTVVSLVFLSAGLVQLVE----------------RDLTFGRAVYFMIVTMSTVGYGDIHP 272
            +F GIP  + LR +++I L+T+  G AWD+FQ+L SL++C   V  +YH   + P  +  +  +IF+ +  LR Y ++NR    F F  +IDLL V P    ++   + T   G R  F FLRF R + IM+ ++  R    +++    +Q   LGL V S+VF+SA L QLVE                R++T G + YF++VT+STVGYGDI P
Sbjct:   57 LFHGIPKGFSLRTRVRIKLETSDSGYAWDMFQTLVSLVACAVCVVQSYHDDVVVPE-VDLSFGVIFATDYCLRLYCAKNRLLFPFTFSAIIDLLAVAPTIYDYVTRDSSTNPTGQRPKFAFLRFVRVLRIMKAIQMSRHSATKQITAIQQQLLSLGLLVTSIVFISACLFQLVENSYRDPIVLPNGETVDRNVTLGDSFYFIMVTISTVGYGDIAP 271          
BLAST of EWM25180.1 vs. NCBI_GenBank
Match: gi|570321594|gb|ETO69542.1| (hypothetical protein F444_13905 [Phytophthora parasitica P1976])

HSP 1 Score: 131.339 bits (329), Expect = 2.248e-30
Identity = 76/206 (36.89%), Postives = 112/206 (54.37%), Query Frame = 0
Query:   77 FQGIPPTYPLRAKMKITLDTTSFGMAWDIFQSLASLLSCITYVASTYHYI---FPLFLQWTLTIIFSCELLLRYYVSENRWAHTFEFFTLIDLLTVLPMYIQFIVAHTGTPMAGH-RSLFFLRFARTMNIMRIVRTFRFGGVRRMPKSTRQCSILGLTVVSLVFLSAGLVQLVERD------LTFGRAVYFMIVTMSTVGYGDIHP 272
            F GIP  YPLR ++++ L  +  G AW+IFQ+L +LL    YV  TY  +    P F   T  I+F+ +  L  Y  ENRW        ++D LT+ P  +  I         GH +SL F+RF R M ++R++R  R  G + +    +Q   + L    L+F++AG+   VE +      LTFG A+YF++VT++TVGYGDI P
Sbjct:   31 FHGIPSHYPLRTRVRMKLKFSKLGTAWEIFQTLFALLVSAAYVIQTYMPLDGRVPTF-DATAMIVFAADYFLNLYCCENRWQFITSVNGIMDALTIFPALVDQI-------DDGHSKSLPFIRFVRVMRMLRLIRVVRVAGSQTVSAVQKQVYTIILLTTCLIFVAAGIFHAVESNDGAQPHLTFGEALYFIVVTIATVGYGDIAP 228          
BLAST of EWM25180.1 vs. NCBI_GenBank
Match: gi|675200819|ref|XP_008909294.1| (hypothetical protein PPTG_14081 [Phytophthora parasitica INRA-310] >gi|568090486|gb|ETN05319.1| hypothetical protein PPTG_14081 [Phytophthora parasitica INRA-310])

HSP 1 Score: 131.339 bits (329), Expect = 2.403e-30
Identity = 76/206 (36.89%), Postives = 112/206 (54.37%), Query Frame = 0
Query:   77 FQGIPPTYPLRAKMKITLDTTSFGMAWDIFQSLASLLSCITYVASTYHYI---FPLFLQWTLTIIFSCELLLRYYVSENRWAHTFEFFTLIDLLTVLPMYIQFIVAHTGTPMAGH-RSLFFLRFARTMNIMRIVRTFRFGGVRRMPKSTRQCSILGLTVVSLVFLSAGLVQLVERD------LTFGRAVYFMIVTMSTVGYGDIHP 272
            F GIP  YPLR ++++ L  +  G AW+IFQ+L +LL    YV  TY  +    P F   T  I+F+ +  L  Y  ENRW        ++D LT+ P  +  I         GH +SL F+RF R M ++R++R  R  G + +    +Q   + L    L+F++AG+   VE +      LTFG A+YF++VT++TVGYGDI P
Sbjct:   31 FHGIPSHYPLRTRVRMKLKFSKLGTAWEIFQTLFALLVSAAYVIQTYMPLDGRVPTF-DATAMIVFAADYFLNLYCCENRWQFITSVNGIMDALTIFPALVDQI-------DDGHSKSLPFIRFVRVMRMLRLIRVVRVAGSQTVSAVQKQVYTIILLTTCLIFVAAGIFHAVESNDGAQPHLTFGEALYFIVVTIATVGYGDIAP 228          
BLAST of EWM25180.1 vs. NCBI_GenBank
Match: gi|566017954|gb|ETI40865.1| (hypothetical protein F443_13871 [Phytophthora parasitica P1569] >gi|567955317|gb|ETK80950.1| hypothetical protein L915_13513 [Phytophthora parasitica] >gi|567983995|gb|ETL34375.1| hypothetical protein L916_13409 [Phytophthora parasitica] >gi|568013468|gb|ETL87645.1| hypothetical protein L917_13219 [Phytophthora parasitica] >gi|568043593|gb|ETM40874.1| hypothetical protein L914_13313 [Phytophthora parasitica] >gi|570945376|gb|ETP10633.1| hypothetical protein F441_13801 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 131.339 bits (329), Expect = 2.513e-30
Identity = 76/206 (36.89%), Postives = 112/206 (54.37%), Query Frame = 0
Query:   77 FQGIPPTYPLRAKMKITLDTTSFGMAWDIFQSLASLLSCITYVASTYHYI---FPLFLQWTLTIIFSCELLLRYYVSENRWAHTFEFFTLIDLLTVLPMYIQFIVAHTGTPMAGH-RSLFFLRFARTMNIMRIVRTFRFGGVRRMPKSTRQCSILGLTVVSLVFLSAGLVQLVERD------LTFGRAVYFMIVTMSTVGYGDIHP 272
            F GIP  YPLR ++++ L  +  G AW+IFQ+L +LL    YV  TY  +    P F   T  I+F+ +  L  Y  ENRW        ++D LT+ P  +  I         GH +SL F+RF R M ++R++R  R  G + +    +Q   + L    L+F++AG+   VE +      LTFG A+YF++VT++TVGYGDI P
Sbjct:   31 FHGIPSHYPLRTRVRMKLKFSKLGTAWEIFQTLFALLVSAAYVIQTYMPLDGRVPTF-DATAMIVFAADYFLNLYCCENRWQFITSVNGIMDALTIFPALVDQI-------DDGHSKSLPFIRFVRVMRMLRLIRVVRVAGSQTVSAVQKQVYTIILLTTCLIFVAAGIFHAVESNDGAQPHLTFGEALYFIVVTIATVGYGDIAP 228          
BLAST of EWM25180.1 vs. NCBI_GenBank
Match: gi|570977107|gb|ETP38787.1| (hypothetical protein F442_13708 [Phytophthora parasitica P10297])

HSP 1 Score: 131.339 bits (329), Expect = 2.661e-30
Identity = 76/206 (36.89%), Postives = 112/206 (54.37%), Query Frame = 0
Query:   77 FQGIPPTYPLRAKMKITLDTTSFGMAWDIFQSLASLLSCITYVASTYHYI---FPLFLQWTLTIIFSCELLLRYYVSENRWAHTFEFFTLIDLLTVLPMYIQFIVAHTGTPMAGH-RSLFFLRFARTMNIMRIVRTFRFGGVRRMPKSTRQCSILGLTVVSLVFLSAGLVQLVERD------LTFGRAVYFMIVTMSTVGYGDIHP 272
            F GIP  YPLR ++++ L  +  G AW+IFQ+L +LL    YV  TY  +    P F   T  I+F+ +  L  Y  ENRW        ++D LT+ P  +  I         GH +SL F+RF R M ++R++R  R  G + +    +Q   + L    L+F++AG+   VE +      LTFG A+YF++VT++TVGYGDI P
Sbjct:   31 FHGIPSHYPLRTRVRMKLKFSKLGTAWEIFQTLFALLVSAAYVIQTYMPLDGRVPTF-DATAMIVFAADYFLNLYCCENRWQFITSVNGIMDALTIFPALVDQI-------DDGHSKSLPFIRFVRVMRMLRLIRVVRVAGSQTVSAVQKQVYTIILLTTCLIFVAAGIFHAVESNDGAQPHLTFGEALYFIVVTIATVGYGDIAP 228          
BLAST of EWM25180.1 vs. NCBI_GenBank
Match: gi|301113226|ref|XP_002998383.1| (Voltage-gated Ion Channel (VIC) Superfamily [Phytophthora infestans T30-4] >gi|262111684|gb|EEY69736.1| Voltage-gated Ion Channel (VIC) Superfamily [Phytophthora infestans T30-4])

HSP 1 Score: 127.102 bits (318), Expect = 6.841e-29
Identity = 75/210 (35.71%), Postives = 111/210 (52.86%), Query Frame = 0
Query:   77 FQGIPPTYPLRAKMKITLDTTSFGMAWDIFQSLASLLSCITYVASTYHYI---FPLFLQWTLTIIFSCELLLRYYVSENRWAHTFEFFTLIDLLTVLPMYIQFIVAHTGTPMAGH-RSLFFLRFARTMNIMRIVRTFRFGGVRRMPKSTRQCSILGLTVVSLVFLSAGLVQLVERD------LTFGRAVYFMIVTMSTVGYGDIHPTRYA 276
            F GIP  YPLR ++++ L  +  G AW+IFQ+  +LL    YV  TY  +    P F      ++FS +  L  Y  ENRW        ++D LT+ P  +  I         GH +SL F+RF R M ++R++R  R  G + +    +Q   + L    L+F++AG+   VE +      LTFG A+YF++VT++TVGYGDI P   A
Sbjct:   31 FHGIPIHYPLRTQVRMKLKFSKLGTAWEIFQTFFALLVSAAYVVQTYMPLDGRVPTF-DAVAMVVFSADYFLNLYCCENRWQFITSVNGIMDALTIFPALVDQI-------DDGHSKSLPFIRFVRVMRMLRLIRVVRVAGSQTVSAVQKQVYTIILLTTCLIFVAAGIFHAVESNDGAQPHLTFGEALYFIVVTIATVGYGDIVPVTSA 232          
The following BLAST results are available for this feature:
BLAST of EWM25180.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106840|gb|EWM25180.1|0.000e+0100.00ion transport protein [Nannochloropsis gaditana][more]
gi|695446461|ref|XP_009534487.1|1.683e-3238.16hypothetical protein PHYSODRAFT_521894 [Phytophtho... [more]
gi|669137292|ref|XP_008604214.1|3.147e-3237.14hypothetical protein SDRG_00512 [Saprolegnia dicli... [more]
gi|813155563|ref|XP_012201376.1|1.070e-3135.92hypothetical protein SPRG_07194 [Saprolegnia paras... [more]
gi|673046383|ref|XP_008877152.1|1.071e-3137.50hypothetical protein H310_12025 [Aphanomyces invad... [more]
gi|570321594|gb|ETO69542.1|2.248e-3036.89hypothetical protein F444_13905 [Phytophthora para... [more]
gi|675200819|ref|XP_008909294.1|2.403e-3036.89hypothetical protein PPTG_14081 [Phytophthora para... [more]
gi|566017954|gb|ETI40865.1|2.513e-3036.89hypothetical protein F443_13871 [Phytophthora para... [more]
gi|570977107|gb|ETP38787.1|2.661e-3036.89hypothetical protein F442_13708 [Phytophthora para... [more]
gi|301113226|ref|XP_002998383.1|6.841e-2935.71Voltage-gated Ion Channel (VIC) Superfamily [Phyto... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5507rna5507Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications