EWM25184.1, cds5489 (CDS) Nannochloropsis gaditana

Overview
NameEWM25184.1
Unique Namecds5489
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:134801..135183 -

Link to JBrowse

Properties
Property NameValue
Start range134801
Start range.
Protein idEWM25184.1
Productpotassium sodium efflux p-type atpase
Partialtrue
Orig transcript idgnl|cribi|Naga_101857g2.1989.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:134801..135183 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR023298ATPase_P-typ_TM_dom
Homology
BLAST of EWM25184.1 vs. NCBI_GenBank
Match: gi|585106845|gb|EWM25184.1| (potassium sodium efflux p-type atpase, partial [Nannochloropsis gaditana])

HSP 1 Score: 261.922 bits (668), Expect = 1.184e-88
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0
Query:    1 MGKCGSDVTKKAADIIIMDDHFATIEHAVEEGRRIGTNVVKFVCHLMSGNVGEVITLMIGLSFRGMDGRSVYPLSTLQILWINMITSTPPVHPSSSSLPPSIPSSLASFFFCLRLRPYHLHLTPLPIL 128
            MGKCGSDVTKKAADIIIMDDHFATIEHAVEEGRRIGTNVVKFVCHLMSGNVGEVITLMIGLSFRGMDGRSVYPLSTLQILWINMITSTPPVHPSSSSLPPSIPSSLASFFFCLRLRPYHLHLTPLPIL
Sbjct:    1 MGKCGSDVTKKAADIIIMDDHFATIEHAVEEGRRIGTNVVKFVCHLMSGNVGEVITLMIGLSFRGMDGRSVYPLSTLQILWINMITSTPPVHPSSSSLPPSIPSSLASFFFCLRLRPYHLHLTPLPIL 128          
BLAST of EWM25184.1 vs. NCBI_GenBank
Match: gi|1183372145|gb|ORX97929.1| (potassium/sodium efflux P-type ATPase [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 123.635 bits (309), Expect = 3.510e-30
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 0
Query:    1 MGKCGSDVTKKAADIIIMDDHFATIEHAVEEGRRIGTNVVKFVCHLMSGNVGEVITLMIGLSFRGMDGRSVYPLSTLQILWINMITSTPPV--------HPSSSSLPPSIPSS 105
            MG  GSDV K+A+DI++ DD+FATI  AVEEGRRI  N+ KFV HLMSGNV EVI L+IGL F    G +VYP+S +QIL++NM+TS+PP         +P +  +PP  P+S
Sbjct:  703 MGMAGSDVAKQASDIVLTDDNFATIVRAVEEGRRIFANIQKFVLHLMSGNVSEVIALVIGLCFADSSGLTVYPMSPVQILFLNMVTSSPPAMALGLEPNNPLTMRMPPRSPTS 815          
BLAST of EWM25184.1 vs. NCBI_GenBank
Match: gi|1183505514|gb|ORZ29062.1| (putative Na P-type ATPase [Lobosporangium transversale])

HSP 1 Score: 122.479 bits (306), Expect = 7.348e-30
Identity = 58/116 (50.00%), Postives = 82/116 (70.69%), Query Frame = 0
Query:    1 MGKCGSDVTKKAADIIIMDDHFATIEHAVEEGRRIGTNVVKFVCHLMSGNVGEVITLMIGLSFRGMDGRSVYPLSTLQILWINMITSTPP-----VHPSSSSLPPSIPSSLASFFF 111
            MG+ GSDV K+AADI++ DD+FATI HAV EGRRI  N+ KF+ HL+S NV E++ L++GL+ +  DG++V+P+S +QIL++NMITS+PP     + P+S S     P S     F
Sbjct:  709 MGQSGSDVAKQAADIVLTDDNFATIVHAVAEGRRIFANIQKFISHLLSTNVAEIVVLIVGLAIKDDDGQAVFPMSAVQILFLNMITSSPPAMGLGLEPASESNMHEPPRSAKQGLF 824          
BLAST of EWM25184.1 vs. NCBI_GenBank
Match: gi|1032647952|gb|OAQ29248.1| (calcium-transporting ATPase 3 [Mortierella elongata AG-77])

HSP 1 Score: 122.094 bits (305), Expect = 1.239e-29
Identity = 61/118 (51.69%), Postives = 83/118 (70.34%), Query Frame = 0
Query:    1 MGKCGSDVTKKAADIIIMDDHFATIEHAVEEGRRIGTNVVKFVCHLMSGNVGEVITLMIGLSFRGMDGRSVYPLSTLQILWINMITSTPPVH------PSSSSL---PPSIPSSLASF 109
            MG+ GSDV K+AADI++ DD+FATI  AV EGRR+  N+ KFV HLMS NV E++ L+IGL F+  DG++V+P+S ++IL++NMITS+PP        PS S++   P S    L SF
Sbjct:  704 MGQSGSDVAKQAADIVLTDDNFATIVQAVAEGRRMFANIQKFVQHLMSANVAEIVVLIIGLVFKDDDGKAVFPMSAVEILFLNMITSSPPAMGLGLEPPSESNMREPPRSAKQGLFSF 821          
BLAST of EWM25184.1 vs. NCBI_GenBank
Match: gi|89885325|emb|CAJ42021.1| (P-Type II D ATPase [Rhizophagus intraradices])

HSP 1 Score: 121.709 bits (304), Expect = 1.600e-29
Identity = 62/115 (53.91%), Postives = 82/115 (71.30%), Query Frame = 0
Query:    1 MGKCGSDVTKKAADIIIMDDHFATIEHAVEEGRRIGTNVVKFVCHLMSGNVGEVITLMIGLSFRGMDGRSVYPLSTLQILWINMITSTPP-----VHPSSSSLPPSIPSSLASFF 110
            MG  GSDV K+A+DI++ DD+FATI +A+ EGRRI +N+ KF+ HL+SGN GE++TL+IGLSF   DG SV P+S LQIL++NMITS+PP     V  +SS +    P S    F
Sbjct:  498 MGLGGSDVAKQASDIVLSDDNFATIVNAIAEGRRIFSNIQKFILHLLSGNSGEIVTLIIGLSFIDSDGISVNPMSPLQILFLNMITSSPPAMGLGVERASSDIMRYPPRSKGGLF 612          
BLAST of EWM25184.1 vs. NCBI_GenBank
Match: gi|595458167|gb|EXX62354.1| (Na(+)-exporting P-type ATPase ENA2 [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 121.324 bits (303), Expect = 1.795e-29
Identity = 62/115 (53.91%), Postives = 82/115 (71.30%), Query Frame = 0
Query:    1 MGKCGSDVTKKAADIIIMDDHFATIEHAVEEGRRIGTNVVKFVCHLMSGNVGEVITLMIGLSFRGMDGRSVYPLSTLQILWINMITSTPP-----VHPSSSSLPPSIPSSLASFF 110
            MG  GSDV K+A+DI++ DD+FATI +A+ EGRRI +N+ KF+ HL+SGN GE++TL+IGLSF   DG SV P+S LQIL++NMITS+PP     V  +SS +    P S    F
Sbjct:  722 MGLGGSDVAKQASDIVLSDDNFATIVNAIAEGRRIFSNIQKFILHLLSGNSGEIVTLIIGLSFIDSDGISVNPMSPLQILFLNMITSSPPAMGLGVERASSDIMRYPPRSKGGLF 836          
BLAST of EWM25184.1 vs. NCBI_GenBank
Match: gi|552926598|gb|ESA10501.1| (hypothetical protein GLOINDRAFT_97285, partial [Rhizophagus irregularis DAOM 181602])

HSP 1 Score: 121.324 bits (303), Expect = 2.163e-29
Identity = 62/115 (53.91%), Postives = 82/115 (71.30%), Query Frame = 0
Query:    1 MGKCGSDVTKKAADIIIMDDHFATIEHAVEEGRRIGTNVVKFVCHLMSGNVGEVITLMIGLSFRGMDGRSVYPLSTLQILWINMITSTPP-----VHPSSSSLPPSIPSSLASFF 110
            MG  GSDV K+A+DI++ DD+FATI +A+ EGRRI +N+ KF+ HL+SGN GE++TL+IGLSF   DG SV P+S LQIL++NMITS+PP     V  +SS +    P S    F
Sbjct:  560 MGLGGSDVAKQASDIVLSDDNFATIVNAIAEGRRIFSNIQKFILHLLSGNSGEIVTLIIGLSFIDSDGISVNPMSPLQILFLNMITSSPPAMGLGVERASSDIMRYPPRSKGGLF 674          
BLAST of EWM25184.1 vs. NCBI_GenBank
Match: gi|552926591|gb|ESA10494.1| (hypothetical protein GLOINDRAFT_29393, partial [Rhizophagus irregularis DAOM 181602])

HSP 1 Score: 120.939 bits (302), Expect = 2.219e-29
Identity = 55/90 (61.11%), Postives = 74/90 (82.22%), Query Frame = 0
Query:    1 MGKCGSDVTKKAADIIIMDDHFATIEHAVEEGRRIGTNVVKFVCHLMSGNVGEVITLMIGLSFRGMDGRSVYPLSTLQILWINMITSTPP 90
            MG  GSDV K+A+DI++ DD+FATI +A+ EGRRI +N+ KF+ HL+SGN GE++TL+IGLSF   DG SV P+S LQIL++NM+TS+PP
Sbjct:  433 MGLGGSDVAKQASDIVLSDDNFATIVNAIAEGRRIFSNIQKFILHLLSGNAGEIVTLIIGLSFIDSDGISVNPMSPLQILFLNMVTSSPP 522          
BLAST of EWM25184.1 vs. NCBI_GenBank
Match: gi|1183499211|gb|ORZ22855.1| (P-type II D ATPase [Lobosporangium transversale])

HSP 1 Score: 121.324 bits (303), Expect = 2.227e-29
Identity = 62/118 (52.54%), Postives = 82/118 (69.49%), Query Frame = 0
Query:    1 MGKCGSDVTKKAADIIIMDDHFATIEHAVEEGRRIGTNVVKFVCHLMSGNVGEVITLMIGLSFRGMDGRSVYPLSTLQILWINMITSTPPVH------PSSSSL---PPSIPSSLASF 109
            MG+ GSDV K+AADI++ DD+FATI  A+ EGRR+  N+ KFV HLMS NV EV+ L+IGL F+  DG SV+P+S ++IL++NMITS+PP        PS S++   P S    L SF
Sbjct:  501 MGQSGSDVAKQAADIVLTDDNFATIVKAIAEGRRMFANIQKFVQHLMSANVAEVVLLVIGLVFQDRDGHSVFPMSAVEILFLNMITSSPPAMGLGLEPPSESNMREPPRSAKQGLFSF 618          
BLAST of EWM25184.1 vs. NCBI_GenBank
Match: gi|89885327|emb|CAJ42022.1| (P-type II D ATPase [Rhizophagus intraradices])

HSP 1 Score: 120.939 bits (302), Expect = 2.601e-29
Identity = 55/90 (61.11%), Postives = 74/90 (82.22%), Query Frame = 0
Query:    1 MGKCGSDVTKKAADIIIMDDHFATIEHAVEEGRRIGTNVVKFVCHLMSGNVGEVITLMIGLSFRGMDGRSVYPLSTLQILWINMITSTPP 90
            MG  GSDV K+A+DI++ DD+FATI +A+ EGRRI +N+ KF+ HL+SGN GE++TL+IGLSF   DG SV P+S LQIL++NM+TS+PP
Sbjct:  499 MGLGGSDVAKQASDIVLSDDNFATIVNAIAEGRRIFSNIQKFILHLLSGNAGEIVTLIIGLSFIDSDGISVNPMSPLQILFLNMVTSSPP 588          
The following BLAST results are available for this feature:
BLAST of EWM25184.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106845|gb|EWM25184.1|1.184e-88100.00potassium sodium efflux p-type atpase, partial [Na... [more]
gi|1183372145|gb|ORX97929.1|3.510e-3054.87potassium/sodium efflux P-type ATPase [Basidiobolu... [more]
gi|1183505514|gb|ORZ29062.1|7.348e-3050.00putative Na P-type ATPase [Lobosporangium transver... [more]
gi|1032647952|gb|OAQ29248.1|1.239e-2951.69calcium-transporting ATPase 3 [Mortierella elongat... [more]
gi|89885325|emb|CAJ42021.1|1.600e-2953.91P-Type II D ATPase [Rhizophagus intraradices][more]
gi|595458167|gb|EXX62354.1|1.795e-2953.91Na(+)-exporting P-type ATPase ENA2 [Rhizophagus ir... [more]
gi|552926598|gb|ESA10501.1|2.163e-2953.91hypothetical protein GLOINDRAFT_97285, partial [Rh... [more]
gi|552926591|gb|ESA10494.1|2.219e-2961.11hypothetical protein GLOINDRAFT_29393, partial [Rh... [more]
gi|1183499211|gb|ORZ22855.1|2.227e-2952.54P-type II D ATPase [Lobosporangium transversale][more]
gi|89885327|emb|CAJ42022.1|2.601e-2961.11P-type II D ATPase [Rhizophagus intraradices][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5503rna5503Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications