EWM25197.1, cds5477 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM25197.1
Unique Name	cds5477
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002466.1:84349..84358 -
Alignment location	CM002466.1:83798..84138 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM25197.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101120g1.4951.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:84349..84358 -
CM002466.1	supercontig	CM002466.1:83798..84138 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM25197.1 vs. NCBI_GenBank
Match: gi|585106867|gb|EWM25197.1| (hypothetical protein Naga_101120g1 [Nannochloropsis gaditana])

HSP 1 Score: 236.884 bits (603), Expect = 5.313e-79
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query:    1 MREAPYDEASHQPCQYGVLLHDGFRRGQEERGDHLPRLVGRSPLPESARAGGGSLEREEGGDKGLTLRERSRTTRGSSSVRRCVYALCQSFYGRVNSKQNQAVKIKKKLRRHFSHA 116
            MREAPYDEASHQPCQYGVLLHDGFRRGQEERGDHLPRLVGRSPLPESARAGGGSLEREEGGDKGLTLRERSRTTRGSSSVRRCVYALCQSFYGRVNSKQNQAVKIKKKLRRHFSHA
Sbjct:    1 MREAPYDEASHQPCQYGVLLHDGFRRGQEERGDHLPRLVGRSPLPESARAGGGSLEREEGGDKGLTLRERSRTTRGSSSVRRCVYALCQSFYGRVNSKQNQAVKIKKKLRRHFSHA 116

The following BLAST results are available for this feature:

BLAST of EWM25197.1 vs. NCBI_GenBank

BLAST of EWM25197.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585106867\|gb\|EWM25197.1\|	5.313e-79	100.00	hypothetical protein Naga_101120g1 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5491	rna5491	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications