EWM25234.1, cds5443 (CDS) Nannochloropsis gaditana

Overview
NameEWM25234.1
Unique Namecds5443
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:1043637..1044233 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25234.1
Producttranscriptional coactivator pterin dehydratase
Orig transcript idgnl|cribi|Naga_100089g9.9643.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:1043637..1044233 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006729tetrahydrobiopterin biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:00081244-alpha-hydroxytetrahydrobiopterin dehydratase activity
Vocabulary: INTERPRO
TermDefinition
IPR001533Trans/pterin_deHydtase
Homology
BLAST of EWM25234.1 vs. NCBI_GenBank
Match: gi|585106926|gb|EWM25234.1| (transcriptional coactivator pterin dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 405.601 bits (1041), Expect = 3.674e-143
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0
Query:    1 MLGGPFSRLTHISFIVHWRCMRQLFLSTPCVVLVAVSAAFQVSFSPAALSTSYCQSMSESAPEVSPPSCTRDAKKHCVPCEGGLPALSIERVQAVLPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAALIDTVPASYSPKWLKEHPEAGKSAAR 198
            MLGGPFSRLTHISFIVHWRCMRQLFLSTPCVVLVAVSAAFQVSFSPAALSTSYCQSMSESAPEVSPPSCTRDAKKHCVPCEGGLPALSIERVQAVLPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAALIDTVPASYSPKWLKEHPEAGKSAAR
Sbjct:    1 MLGGPFSRLTHISFIVHWRCMRQLFLSTPCVVLVAVSAAFQVSFSPAALSTSYCQSMSESAPEVSPPSCTRDAKKHCVPCEGGLPALSIERVQAVLPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAALIDTVPASYSPKWLKEHPEAGKSAAR 198          
BLAST of EWM25234.1 vs. NCBI_GenBank
Match: gi|553185057|ref|XP_005854194.1| (transcriptional coactivator pterin dehydratase [Nannochloropsis gaditana CCMP526] >gi|553194297|ref|XP_005855923.1| transcriptional coactivator pterin dehydratase [Nannochloropsis gaditana CCMP526] >gi|422293138|gb|EKU20438.1| transcriptional coactivator pterin dehydratase [Nannochloropsis gaditana CCMP526] >gi|422294866|gb|EKU22166.1| transcriptional coactivator pterin dehydratase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 356.295 bits (913), Expect = 5.159e-124
Identity = 174/178 (97.75%), Postives = 176/178 (98.88%), Query Frame = 0
Query:   21 MRQLFLSTPCVVLVAVSAAFQVSFSPAALSTSYCQSMSESAPEVSPPSCTRDAKKHCVPCEGGLPALSIERVQAVLPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAALIDTVPASYSPKWLKEHPEAGKSAAR 198
            MRQL LSTPCVVLVAVSAAFQVSFSPAALSTSYC SMSESAPEVSPPSCTRDAKKHC+PCEGGLPALSIERVQAVLPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAALIDT+PASYSPKWLKEHPEAGKSAAR
Sbjct:    1 MRQLLLSTPCVVLVAVSAAFQVSFSPAALSTSYCNSMSESAPEVSPPSCTRDAKKHCLPCEGGLPALSIERVQAVLPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAALIDTIPASYSPKWLKEHPEAGKSAAR 178          
BLAST of EWM25234.1 vs. NCBI_GenBank
Match: gi|1113363484|gb|OJW26967.1| (pterin-4-alpha-carbinolamine dehydratase [Planctomycetales bacterium 71-10])

HSP 1 Score: 137.117 bits (344), Expect = 2.935e-38
Identity = 64/121 (52.89%), Postives = 80/121 (66.12%), Query Frame = 0
Query:   64 VSPPSCTRDAKKHCVPCEGGLPALSIERVQAVLPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAALIDTVPASYSPK 184
            +S P+      + CVPCEGG+P L+ E V+ +L ++  W LS D KR+ R +TAKNF A L F D VG +AE EGHHPDL LT YR V V + THA+GGL+END I+AA ID VP     K
Sbjct:    1 MSTPTVAELTSRKCVPCEGGVPPLAREEVEELLKAVAGWSLSSDGKRIRREWTAKNFVAGLRFFDKVGELAEAEGHHPDLSLTGYRNVAVEITTHAIGGLSENDFILAAKIDEVPIETKKK 121          
BLAST of EWM25234.1 vs. NCBI_GenBank
Match: gi|1057007706|ref|WP_068419222.1| (4a-hydroxytetrahydrobiopterin dehydratase [Planctomyces sp. SH-PL62] >gi|1015457919|gb|AMV39701.1| Putative pterin-4-alpha-carbinolamine dehydratase [Planctomyces sp. SH-PL62])

HSP 1 Score: 132.88 bits (333), Expect = 1.189e-36
Identity = 60/115 (52.17%), Postives = 81/115 (70.43%), Query Frame = 0
Query:   64 VSPPSCTRDAKKHCVPCEGGLPALSIERVQAVLPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAALIDTVP 178
            +S P+ T    K CVPCEGG+P L  + V A++ ++P W L +D KR+ R +TA+NF A L F+D VG +AE EGHHPDLHL  YR V + + THA+GGL+END I+AA I+ +P
Sbjct:    1 MSIPTLTELTSKKCVPCEGGVPPLEPDVVDALIRTVPGWTLDEDGKRIHRGWTARNFVAGLHFLDKVGELAEEEGHHPDLHLEGYRNVAIEITTHAIGGLSENDFILAAKINAIP 115          
BLAST of EWM25234.1 vs. NCBI_GenBank
Match: gi|1134106546|ref|WP_076349719.1| (4a-hydroxytetrahydrobiopterin dehydratase [Paludisphaera borealis] >gi|1133586075|gb|APW63366.1| Putative pterin-4-alpha-carbinolamine dehydratase [Paludisphaera borealis])

HSP 1 Score: 126.331 bits (316), Expect = 6.095e-34
Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 0
Query:   64 VSPPSCTRDAKKHCVPCEGGLPALSIERVQAVLPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAALIDTVP 178
            +S P+      K CVPCEG +P LS +  +A+L ++  W LS D +R+ R + AKNF A + F + V A+AE EGHHPDLHL  YR V + L+THA GGLTEND I+AA I+ +P
Sbjct:    1 MSTPTLIELTSKKCVPCEGDVPPLSPDEAKALLEAVADWSLSHDGQRIRREWIAKNFMAGIDFFEKVAALAESEGHHPDLHLEGYRNVAIELWTHAAGGLTENDFILAAKINEIP 115          
BLAST of EWM25234.1 vs. NCBI_GenBank
Match: gi|1125409139|gb|OLD42442.1| (pterin-4-alpha-carbinolamine dehydratase [Gemmatimonadetes bacterium 13_1_40CM_2_70_7])

HSP 1 Score: 125.176 bits (313), Expect = 1.154e-33
Identity = 56/110 (50.91%), Postives = 79/110 (71.82%), Query Frame = 0
Query:   68 SCTRDAKKHCVPCEGGLPALSIERVQAVLPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAALIDTV 177
            + T  AKK CVPC GG   LS E+  A L ++P WR+S D K+++R+FT K+F  A+ F++ V  VAE +GHHPD+H+  + +VE+VL+THA+GGL END +MAA ID +
Sbjct:    2 NATELAKKQCVPCRGGTAPLSAEQANAYLAAVPEWRVSADGKQIARTFTFKDFVQAMKFVNKVADVAEAQGHHPDIHI-HWNKVELVLWTHAIGGLHENDFVMAARIDNL 110          
BLAST of EWM25234.1 vs. NCBI_GenBank
Match: gi|1088329184|gb|OHB79306.1| (pterin-4-alpha-carbinolamine dehydratase [Planctomycetes bacterium RBG_16_64_12])

HSP 1 Score: 124.79 bits (312), Expect = 2.402e-33
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 0
Query:   75 KHCVPCEGGLPALSIERVQAVLPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAALIDTVP 178
            K C  CEGG+  LS  +VQ  L +L  WRL+ D +R+ + +  K+F A + F++ V  +AE EGHHPDLHL  YR V +VL+THAVGGLTEND I+AA ID +P
Sbjct:   12 KKCTACEGGVEKLSAAQVQGQLGALSGWRLTGDEERIRKDWEVKSFRAGMEFLNRVAELAEQEGHHPDLHLEGYRHVSIVLWTHAVGGLTENDFILAAKIDQLP 115          
BLAST of EWM25234.1 vs. NCBI_GenBank
Match: gi|1129169371|gb|OLP79970.1| (4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Symbiodinium microadriaticum])

HSP 1 Score: 132.109 bits (331), Expect = 3.218e-33
Identity = 62/111 (55.86%), Postives = 78/111 (70.27%), Query Frame = 0
Query:   80 CEGGLPALSIERVQAVLPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAALIDTVPASYSPKWLKEHP 190
            C    P LS E V A +P LPLW LS D   +SR F AKN+AAA++F++ V  +AE EGHHPD+H+TSYR V V L THA+GGL+  D ++AA +D +   YSPKWLKEHP
Sbjct:  295 CGKDTPGLSREEVLARIPLLPLWVLSPDGASISRCFVAKNWAAAMSFLNEVSVLAEQEGHHPDVHITSYRNVRVELSTHAIGGLSLPDFVLAAKMDQIKVEYSPKWLKEHP 405          
BLAST of EWM25234.1 vs. NCBI_GenBank
Match: gi|1123624913|ref|WP_074315501.1| (4a-hydroxytetrahydrobiopterin dehydratase [Singulisphaera sp. GP187] >gi|1119029654|emb|SIO60002.1| 4a-hydroxytetrahydrobiopterin dehydratase [Singulisphaera sp. GP187])

HSP 1 Score: 123.635 bits (309), Expect = 5.307e-33
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 0
Query:   74 KKHCVPCEGGLPALSIERVQAVLPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAALIDTVP 178
            +K C PCEGG+P + ++  +A L  L  W L+ D  R+  ++TAKNF AA+ F + V  +AE +GHHPDLHL  YR V +VL+THA+GGL+END I+AA I+ +P
Sbjct:   11 RKTCSPCEGGIPPVPVDEAKAYLTHLEGWELAADGTRIKHTWTAKNFMAAIDFFNKVAELAELDGHHPDLHLEGYRNVTIVLWTHAIGGLSENDFILAAKINQIP 115          
BLAST of EWM25234.1 vs. NCBI_GenBank
Match: gi|505059250|ref|WP_015246352.1| (4a-hydroxytetrahydrobiopterin dehydratase [Singulisphaera acidiphila] >gi|430015489|gb|AGA27203.1| pterin-4a-carbinolamine dehydratase [Singulisphaera acidiphila DSM 18658])

HSP 1 Score: 123.635 bits (309), Expect = 5.726e-33
Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = 0
Query:   74 KKHCVPCEGGLPALSIERVQAVLPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAALIDTVP 178
            +K C PCEGG+P +  +  +A+L  +  W+L+ D  R+ RS+TAKNF AA+ F + V  +AE +GHHPDLHL  YR V + L+THA+GGL+END I+AA I+ +P
Sbjct:   11 RKKCSPCEGGIPPVPADEARALLTHIEGWKLADDGTRIKRSWTAKNFMAAIDFFNKVAELAEQDGHHPDLHLEGYRNVSIELWTHAIGGLSENDFILAAKINQLP 115          
The following BLAST results are available for this feature:
BLAST of EWM25234.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106926|gb|EWM25234.1|3.674e-143100.00transcriptional coactivator pterin dehydratase [Na... [more]
gi|553185057|ref|XP_005854194.1|5.159e-12497.75transcriptional coactivator pterin dehydratase [Na... [more]
gi|1113363484|gb|OJW26967.1|2.935e-3852.89pterin-4-alpha-carbinolamine dehydratase [Planctom... [more]
gi|1057007706|ref|WP_068419222.1|1.189e-3652.174a-hydroxytetrahydrobiopterin dehydratase [Plancto... [more]
gi|1134106546|ref|WP_076349719.1|6.095e-3450.434a-hydroxytetrahydrobiopterin dehydratase [Paludis... [more]
gi|1125409139|gb|OLD42442.1|1.154e-3350.91pterin-4-alpha-carbinolamine dehydratase [Gemmatim... [more]
gi|1088329184|gb|OHB79306.1|2.402e-3352.88pterin-4-alpha-carbinolamine dehydratase [Planctom... [more]
gi|1129169371|gb|OLP79970.1|3.218e-3355.864-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
gi|1123624913|ref|WP_074315501.1|5.307e-3350.484a-hydroxytetrahydrobiopterin dehydratase [Singuli... [more]
gi|505059250|ref|WP_015246352.1|5.726e-3350.484a-hydroxytetrahydrobiopterin dehydratase [Singuli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5456rna5456Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications