EWM30130.1, cds543 (CDS) Nannochloropsis gaditana

Overview
NameEWM30130.1
Unique Namecds543
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1361750..1362729 -

Link to JBrowse

Properties
Property NameValue
Start range1361750
Start range.
Protein idEWM30130.1
Productt7-like mitochondrial dna helicase
Partialtrue
Orig transcript idgnl|cribi|Naga_101103g1.1353.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1361750..1362729 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0016740transferase activity
GO:0003697single-stranded DNA binding
GO:00431395'-3' DNA helicase activity
GO:0003677DNA binding
GO:0003896DNA primase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006260DNA replication
Vocabulary: INTERPRO
TermDefinition
IPR027032Twinkle-like
IPR002694Znf_CHC2
Homology
[Close]
BLAST of EWM30130.1 vs. NCBI_GenBank
Match: gi|585112781|gb|EWM30130.1| (t7-like mitochondrial dna helicase, partial [Nannochloropsis gaditana])

HSP 1 Score: 670.618 bits (1729), Expect = 0.000e+0
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0 
Query:    1 MLRLTANVKHQDAGYVRRLGQVWGRHHGQDVKSKPLGAEVPARCSTACFTGNSTQEQQQSLRVYDGRRQPYGTRHLKHSQQPPRVASRAVRVFPPCLTSPSTPSAPSSSWISSLPRQATHSSPWCSFSFHQPRQCRHKSSSANYLPPTISYPPSFPSSPLPSSSPPGGTTFVSKYYRIEAGDVIEFLHRKDLTFRETASHFILKECPFCHRPTRDQADNLWKLYVSKDGAAWFCHRCGAKGSWFDFKRGLSGSGAGCLNPLSSRDGAGAEATWGGYPEPLGGGGPEGGMEVGMEGGRAYEQTRGAQGEALGSLVTSTSVARHPAPAP 327
            MLRLTANVKHQDAGYVRRLGQVWGRHHGQDVKSKPLGAEVPARCSTACFTGNSTQEQQQSLRVYDGRRQPYGTRHLKHSQQPPRVASRAVRVFPPCLTSPSTPSAPSSSWISSLPRQATHSSPWCSFSFHQPRQCRHKSSSANYLPPTISYPPSFPSSPLPSSSPPGGTTFVSKYYRIEAGDVIEFLHRKDLTFRETASHFILKECPFCHRPTRDQADNLWKLYVSKDGAAWFCHRCGAKGSWFDFKRGLSGSGAGCLNPLSSRDGAGAEATWGGYPEPLGGGGPEGGMEVGMEGGRAYEQTRGAQGEALGSLVTSTSVARHPAPAP
Sbjct:    1 MLRLTANVKHQDAGYVRRLGQVWGRHHGQDVKSKPLGAEVPARCSTACFTGNSTQEQQQSLRVYDGRRQPYGTRHLKHSQQPPRVASRAVRVFPPCLTSPSTPSAPSSSWISSLPRQATHSSPWCSFSFHQPRQCRHKSSSANYLPPTISYPPSFPSSPLPSSSPPGGTTFVSKYYRIEAGDVIEFLHRKDLTFRETASHFILKECPFCHRPTRDQADNLWKLYVSKDGAAWFCHRCGAKGSWFDFKRGLSGSGAGCLNPLSSRDGAGAEATWGGYPEPLGGGGPEGGMEVGMEGGRAYEQTRGAQGEALGSLVTSTSVARHPAPAP 327
[Close]
BLAST of EWM30130.1 vs. NCBI_GenBank
Match: gi|567950877|gb|ETK76584.1| (hypothetical protein L915_17043 [Phytophthora parasitica] >gi|570940898|gb|ETP06155.1| hypothetical protein F441_17377 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 110.538 bits (275), Expect = 3.757e-23
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 0 
Query:  171 FVSKYYRIEA-GDVIEFLHRKDLTFRETASHFILKECPFCHRPTRDQADNLWKLYVSKDGAAWFCHRCGAKGSWFDFKRGLSGS 253
            FVS++Y+++   DV +FLHRK LT RET SHF++++CPFCH  T  +ADNL+K+YV K    + CHRCG+ GSWFDFKR L G+
Sbjct:   36 FVSRHYQMQNPKDVADFLHRKSLTVRETDSHFVVRDCPFCH-ATHGKADNLFKMYVHKTQGVYKCHRCGSAGSWFDFKRKLQGN 118
[Close]
BLAST of EWM30130.1 vs. NCBI_GenBank
Match: gi|566013450|gb|ETI36361.1| (hypothetical protein F443_17509 [Phytophthora parasitica P1569] >gi|568038957|gb|ETM36471.1| hypothetical protein L914_16848 [Phytophthora parasitica] >gi|570971181|gb|ETP34300.1| hypothetical protein F442_17360 [Phytophthora parasitica P10297])

HSP 1 Score: 110.538 bits (275), Expect = 3.757e-23
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 0 
Query:  171 FVSKYYRIEA-GDVIEFLHRKDLTFRETASHFILKECPFCHRPTRDQADNLWKLYVSKDGAAWFCHRCGAKGSWFDFKRGLSGS 253
            FVS++Y+++   DV +FLHRK LT RET SHF++++CPFCH  T  +ADNL+K+YV K    + CHRCG+ GSWFDFKR L G+
Sbjct:   36 FVSRHYQMQDPKDVADFLHRKSLTVRETDSHFVVRDCPFCH-ATHGKADNLFKMYVHKTQGVYKCHRCGSAGSWFDFKRKLQGN 118
[Close]
BLAST of EWM30130.1 vs. NCBI_GenBank
Match: gi|675174211|ref|XP_008895990.1| (hypothetical protein PPTG_03943 [Phytophthora parasitica INRA-310] >gi|567979544|gb|ETL30022.1| hypothetical protein L916_16938 [Phytophthora parasitica] >gi|568009043|gb|ETL83256.1| hypothetical protein L917_16766 [Phytophthora parasitica] >gi|568103640|gb|ETN18297.1| hypothetical protein PPTG_03943 [Phytophthora parasitica INRA-310] >gi|570317165|gb|ETO65113.1| hypothetical protein F444_17549 [Phytophthora parasitica P1976])

HSP 1 Score: 110.538 bits (275), Expect = 3.975e-23
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 0 
Query:  171 FVSKYYRIEA-GDVIEFLHRKDLTFRETASHFILKECPFCHRPTRDQADNLWKLYVSKDGAAWFCHRCGAKGSWFDFKRGLSGS 253
            FVS++Y+++   DV +FLHRK LT RET SHF++++CPFCH  T  +ADNL+K+YV K    + CHRCG+ GSWFDFKR L G+
Sbjct:   36 FVSRHYQMQDPKDVADFLHRKSLTVRETDSHFVVRDCPFCH-ATHGKADNLFKMYVHKTQGVYKCHRCGSAGSWFDFKRKLQGN 118
[Close]
BLAST of EWM30130.1 vs. NCBI_GenBank
Match: gi|290995598|ref|XP_002680370.1| (predicted protein [Naegleria gruberi] >gi|284093990|gb|EFC47626.1| predicted protein [Naegleria gruberi])

HSP 1 Score: 110.153 bits (274), Expect = 6.118e-23
Identity = 50/103 (48.54%), Postives = 64/103 (62.14%), Query Frame = 0 
Query:  148 TISYPPSFPSSPLPSSSPPGGTTFVSKYYRIEAGDVIEFLHRKDLTFRETASHFILKECPFCHRPTRDQADNLWKLYVSKDGAAWFCHRCGAKGSWFDFKRGL 250
            T+   P   ++PL + S     TFVS +Y+I   D+ EFL RK L FR   +  I+KECPFCH  T+ +  NLWKLY+ +   A+ CHRCGAKGSWFDFK   
Sbjct:  122 TLEETPEDRNNPLQNHSN-AFNTFVSNFYKINESDIQEFLTRKGLGFRNVMNEIIVKECPFCH-DTKGKVTNLWKLYIHRASGAYMCHRCGAKGSWFDFKMNF 222
[Close]
BLAST of EWM30130.1 vs. NCBI_GenBank
Match: gi|970641601|gb|KUF83617.1| (Twinkle protein [Phytophthora nicotianae])

HSP 1 Score: 109.768 bits (273), Expect = 7.975e-23
Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 0 
Query:  171 FVSKYYRIEA-GDVIEFLHRKDLTFRETASHFILKECPFCHRPTRDQADNLWKLYVSKDGAAWFCHRCGAKGSWFDFKRGLSGS 253
            FVS++Y+++   DV +FLHRK LT RET SHF++++CPFCH  T  +ADN++K+YV K    + CHRCG+ GSWFDFKR L G+
Sbjct:   36 FVSRHYQMQDPKDVADFLHRKSLTVRETDSHFVVRDCPFCH-ATHGKADNIFKMYVHKTQGVYKCHRCGSAGSWFDFKRKLQGN 118
[Close]
BLAST of EWM30130.1 vs. NCBI_GenBank
Match: gi|970656360|gb|KUF94381.1| (hypothetical protein AM588_10009857 [Phytophthora nicotianae])

HSP 1 Score: 109.383 bits (272), Expect = 8.256e-23
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 0 
Query:  171 FVSKYYRIEA-GDVIEFLHRKDLTFRETASHFILKECPFCHRPTRDQADNLWKLYVSKDGAAWFCHRCGAKGSWFDFKRGLSGS--GAGCLNPLSSRDGAGA 269
            FVS++Y+++   DV +FLHRK LT RET SHF++++CPFCH  T  +ADN++K+YV K    + CHRCG+ GSWFDFKR L G+   A   N L     AGA
Sbjct:   15 FVSRHYQMQDPKDVADFLHRKSLTVRETDSHFVVRDCPFCH-ATHGKADNIFKMYVHKTQGVYKCHRCGSAGSWFDFKRKLQGNVGVASSSNALYGGSNAGA 115
[Close]
BLAST of EWM30130.1 vs. NCBI_GenBank
Match: gi|698782009|ref|XP_009824048.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574121772|gb|ETV87249.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 108.997 bits (271), Expect = 1.330e-22
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 0 
Query:  154 SFPSSPLPSSSPPGGTTFVSKYYRIEAGDVI-EFLHRKDLTFRETASHFILKECPFCHRPTRDQADNLWKLYVSKDGAAWFCHRCGAKGSWFDFKRGLSGSG 254
            SF SS   +S+      FVSKYY ++    I E+L RK L  +ET++H+++++CPFCH  T+ +ADNL+KLY++K    + CHRCGA GSWF FK+ L  S 
Sbjct:   61 SFHSSAAVASTVNNTKAFVSKYYELDDHRAIDEYLRRKSLVLKETSTHYVVRDCPFCH-ATKGRADNLFKLYINKSNGVYICHRCGASGSWFTFKQNLGASN 161
[Close]
BLAST of EWM30130.1 vs. NCBI_GenBank
Match: gi|673023482|ref|XP_008865702.1| (hypothetical protein H310_03565 [Aphanomyces invadans] >gi|574478930|gb|ETW05925.1| hypothetical protein H310_03565 [Aphanomyces invadans])

HSP 1 Score: 108.997 bits (271), Expect = 1.366e-22
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 0 
Query:  171 FVSKYYRIEAGDVI-EFLHRKDLTFRETASHFILKECPFCHRPTRDQADNLWKLYVSKDGAAWFCHRCGAKGSWFDFKRGLS 251
            FVSKYY +E    I EFL RK L  +ET++H+I+++CPFCH PT+ +ADNL+KLY++K    + CHRCGA GSWF FK+ LS
Sbjct:   59 FVSKYYELEDHRAIDEFLRRKSLVLKETSTHYIVRDCPFCH-PTKGRADNLFKLYINKANGVYICHRCGASGSWFTFKQNLS 139
[Close]
BLAST of EWM30130.1 vs. NCBI_GenBank
Match: gi|698782007|ref|XP_009824047.1| (hypothetical protein H257_02207 [Aphanomyces astaci] >gi|574121771|gb|ETV87248.1| hypothetical protein H257_02207 [Aphanomyces astaci])

HSP 1 Score: 108.997 bits (271), Expect = 1.439e-22
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 0 
Query:  154 SFPSSPLPSSSPPGGTTFVSKYYRIEAGDVI-EFLHRKDLTFRETASHFILKECPFCHRPTRDQADNLWKLYVSKDGAAWFCHRCGAKGSWFDFKRGLSGSG 254
            SF SS   +S+      FVSKYY ++    I E+L RK L  +ET++H+++++CPFCH  T+ +ADNL+KLY++K    + CHRCGA GSWF FK+ L  S 
Sbjct:   61 SFHSSAAVASTVNNTKAFVSKYYELDDHRAIDEYLRRKSLVLKETSTHYVVRDCPFCH-ATKGRADNLFKLYINKSNGVYICHRCGASGSWFTFKQNLGASN 161
The following BLAST results are available for this feature:
BLAST of EWM30130.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112781|gb|EWM30130.1|0.000e+0100.00t7-like mitochondrial dna helicase, partial [Nanno... [more]
gi|567950877|gb|ETK76584.1|3.757e-2357.14hypothetical protein L915_17043 [Phytophthora para... [more]
gi|566013450|gb|ETI36361.1|3.757e-2357.14hypothetical protein F443_17509 [Phytophthora para... [more]
gi|675174211|ref|XP_008895990.1|3.975e-2357.14hypothetical protein PPTG_03943 [Phytophthora para... [more]
gi|290995598|ref|XP_002680370.1|6.118e-2348.54predicted protein [Naegleria gruberi] >gi|28409399... [more]
gi|970641601|gb|KUF83617.1|7.975e-2355.95Twinkle protein [Phytophthora nicotianae][more]
gi|970656360|gb|KUF94381.1|8.256e-2351.96hypothetical protein AM588_10009857 [Phytophthora ... [more]
gi|698782009|ref|XP_009824048.1|1.330e-2247.06hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|673023482|ref|XP_008865702.1|1.366e-2257.32hypothetical protein H310_03565 [Aphanomyces invad... [more]
gi|698782007|ref|XP_009824047.1|1.439e-2247.06hypothetical protein H257_02207 [Aphanomyces astac... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna543rna543Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications