EWM25298.1, cds5378 (CDS) Nannochloropsis gaditana

Overview
NameEWM25298.1
Unique Namecds5378
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:892657..893820 +
Alignment locationCM002465.1:893938..894180 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25298.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100240g4.2376.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:892657..893820 +
CM002465.1supercontigCM002465.1:893938..894180 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM25298.1 vs. NCBI_GenBank
Match: gi|585107048|gb|EWM25298.1| (hypothetical protein Naga_100240g4 [Nannochloropsis gaditana])

HSP 1 Score: 939.488 bits (2427), Expect = 0.000e+0
Identity = 468/468 (100.00%), Postives = 468/468 (100.00%), Query Frame = 0 
Query:    1 MTSHTKDLGPGCALPGPRLGLLHPPARGSLSLPNSTDASQGHCHDPSKSHDSTSSNRLGVTSVRSFANGRALGGPAGLSAATAAFFYPKQKAAASDTGGNGGNKGDNRGDVDEEVVIIPSIQTGRPEAEGDSGTGKEPRLLDTRSAAPGTTDAPGTSVGSPEPIAAQTRAGCASIPSEPGAVAGQASVLSPPSSASLRPPPPAEVGTEGSGPEREGGREGGREEGGAPAVKRDVNEVVEGRASSQVGNTADAGAAIQPADRTEEECVLVSDGFNPEKERPTEDEKGEGEEEDEAREAQGGEAGGRTSLSSPPLGKMLVEILSPQVAHPTDIKAADPPTSLAKHVPPAESLPPSTSYGPAVVSAGAKKKQQSSLMHYWGRKGRNTAPPAGREELGFRSGIVWLMLLARSSSTQVYAFINHFVTVCSHKVQETSKVAFKKALGKLSWKESEILTYMCKRGGNAKEGRGGQ 468
            MTSHTKDLGPGCALPGPRLGLLHPPARGSLSLPNSTDASQGHCHDPSKSHDSTSSNRLGVTSVRSFANGRALGGPAGLSAATAAFFYPKQKAAASDTGGNGGNKGDNRGDVDEEVVIIPSIQTGRPEAEGDSGTGKEPRLLDTRSAAPGTTDAPGTSVGSPEPIAAQTRAGCASIPSEPGAVAGQASVLSPPSSASLRPPPPAEVGTEGSGPEREGGREGGREEGGAPAVKRDVNEVVEGRASSQVGNTADAGAAIQPADRTEEECVLVSDGFNPEKERPTEDEKGEGEEEDEAREAQGGEAGGRTSLSSPPLGKMLVEILSPQVAHPTDIKAADPPTSLAKHVPPAESLPPSTSYGPAVVSAGAKKKQQSSLMHYWGRKGRNTAPPAGREELGFRSGIVWLMLLARSSSTQVYAFINHFVTVCSHKVQETSKVAFKKALGKLSWKESEILTYMCKRGGNAKEGRGGQ
Sbjct:    1 MTSHTKDLGPGCALPGPRLGLLHPPARGSLSLPNSTDASQGHCHDPSKSHDSTSSNRLGVTSVRSFANGRALGGPAGLSAATAAFFYPKQKAAASDTGGNGGNKGDNRGDVDEEVVIIPSIQTGRPEAEGDSGTGKEPRLLDTRSAAPGTTDAPGTSVGSPEPIAAQTRAGCASIPSEPGAVAGQASVLSPPSSASLRPPPPAEVGTEGSGPEREGGREGGREEGGAPAVKRDVNEVVEGRASSQVGNTADAGAAIQPADRTEEECVLVSDGFNPEKERPTEDEKGEGEEEDEAREAQGGEAGGRTSLSSPPLGKMLVEILSPQVAHPTDIKAADPPTSLAKHVPPAESLPPSTSYGPAVVSAGAKKKQQSSLMHYWGRKGRNTAPPAGREELGFRSGIVWLMLLARSSSTQVYAFINHFVTVCSHKVQETSKVAFKKALGKLSWKESEILTYMCKRGGNAKEGRGGQ 468
The following BLAST results are available for this feature:
BLAST of EWM25298.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585107048|gb|EWM25298.1|0.000e+0100.00hypothetical protein Naga_100240g4 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5391rna5391Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications