EWM25318.1, cds5354 (CDS) Nannochloropsis gaditana

Overview
NameEWM25318.1
Unique Namecds5354
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:817821..818019 +
Alignment locationCM002465.1:818260..818371 +
Alignment locationCM002465.1:818552..818798 +
Alignment locationCM002465.1:818970..819059 +
Alignment locationCM002465.1:819185..819319 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25318.1
ProductHeat shock chaperonin-binding protein
Orig transcript idgnl|cribi|Naga_100281g4.5084.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:817821..818019 +
CM002465.1supercontigCM002465.1:818260..818371 +
CM002465.1supercontigCM002465.1:818552..818798 +
CM002465.1supercontigCM002465.1:818970..819059 +
CM002465.1supercontigCM002465.1:819185..819319 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR006636STI1_HS-bd
Homology
BLAST of EWM25318.1 vs. NCBI_GenBank
Match: gi|585107074|gb|EWM25318.1| (Heat shock chaperonin-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 510.76 bits (1314), Expect = 0.000e+0
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
Query:    1 MSRPASFLRPVALLLGVLVLFLVSSSADALFSKLAKKKKQQEQQHEEKAFTGTESANMGLEAFQDLFANPSGMQELMNMQKDPEIMREVEALLEDPEFQAYMAEYMNSDAVKESLKMAEKLANDPKALEAFQSKMLAAMQGNAEDGTESARTGLETLAASVQDPSGLMQAMDMLKDPAVVKEVESLMADPDFQREMKKMAESPMFAEAMQQAQALTEELQKDPAKLEAFMKDLESEMAKMGGAAGLPMGKAGAGRGRVEL 260
            MSRPASFLRPVALLLGVLVLFLVSSSADALFSKLAKKKKQQEQQHEEKAFTGTESANMGLEAFQDLFANPSGMQELMNMQKDPEIMREVEALLEDPEFQAYMAEYMNSDAVKESLKMAEKLANDPKALEAFQSKMLAAMQGNAEDGTESARTGLETLAASVQDPSGLMQAMDMLKDPAVVKEVESLMADPDFQREMKKMAESPMFAEAMQQAQALTEELQKDPAKLEAFMKDLESEMAKMGGAAGLPMGKAGAGRGRVEL
Sbjct:    1 MSRPASFLRPVALLLGVLVLFLVSSSADALFSKLAKKKKQQEQQHEEKAFTGTESANMGLEAFQDLFANPSGMQELMNMQKDPEIMREVEALLEDPEFQAYMAEYMNSDAVKESLKMAEKLANDPKALEAFQSKMLAAMQGNAEDGTESARTGLETLAASVQDPSGLMQAMDMLKDPAVVKEVESLMADPDFQREMKKMAESPMFAEAMQQAQALTEELQKDPAKLEAFMKDLESEMAKMGGAAGLPMGKAGAGRGRVEL 260          
BLAST of EWM25318.1 vs. NCBI_GenBank
Match: gi|553186439|ref|XP_005854418.1| (hypothetical protein NGA_0231701 [Nannochloropsis gaditana CCMP526] >gi|422294644|gb|EKU21944.1| hypothetical protein NGA_0231701 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 501.901 bits (1291), Expect = 3.064e-179
Identity = 256/260 (98.46%), Postives = 256/260 (98.46%), Query Frame = 0
Query:    1 MSRPASFLRPVALLLGVLVLFLVSSSADALFSKLAKKKKQQEQQHEEKAFTGTESANMGLEAFQDLFANPSGMQELMNMQKDPEIMREVEALLEDPEFQAYMAEYMNSDAVKESLKMAEKLANDPKALEAFQSKMLAAMQGNAEDGTESARTGLETLAASVQDPSGLMQAMDMLKDPAVVKEVESLMADPDFQREMKKMAESPMFAEAMQQAQALTEELQKDPAKLEAFMKDLESEMAKMGGAAGLPMGKAGAGRGRVEL 260
            MSRPASFLRPVALLLGVLVL LVSSSADALFSKLAKKKKQQEQQHE KAFTG ESANMGLEAFQDLFANPSGMQELMNMQKDPEIMREVEALLEDPEFQAYMAEYMNSDAVKESLKMAEKLANDPKALEAFQSKMLAAMQGNAEDGTESARTGLETLAASVQDPSGLMQAMDMLKDPAVVKEVESLMADPDFQREMKKMAESPMFAEAMQQAQALTEELQKDPAKLE FMKDLESEMAKMGGAAGLPMGKAGAGRGRVEL
Sbjct:    1 MSRPASFLRPVALLLGVLVLVLVSSSADALFSKLAKKKKQQEQQHEGKAFTGIESANMGLEAFQDLFANPSGMQELMNMQKDPEIMREVEALLEDPEFQAYMAEYMNSDAVKESLKMAEKLANDPKALEAFQSKMLAAMQGNAEDGTESARTGLETLAASVQDPSGLMQAMDMLKDPAVVKEVESLMADPDFQREMKKMAESPMFAEAMQQAQALTEELQKDPAKLEVFMKDLESEMAKMGGAAGLPMGKAGAGRGRVEL 260          
BLAST of EWM25318.1 vs. NCBI_GenBank
Match: gi|298710435|emb|CBJ25499.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 82.4185 bits (202), Expect = 1.903e-15
Identity = 73/226 (32.30%), Postives = 107/226 (47.35%), Query Frame = 0
Query:    7 FLRPVALLLGVLVLFLVSSSADALFSKLAKKKKQQEQQHEEKAFTGTESANMGLEAFQDLFANPSGMQELMNMQKDPEIMREVEAL---LEDPEFQAYMAEYMNSDAVKESLKMAEKLANDPKALEAFQSK------MLAAMQGNAEDGTESARTGLETLAASVQDPSGLMQAMDMLKDPAVVKEVESLMADPDFQREMKKMAESPMFAEAMQQAQALTEELQKDP 223
            F+  VA LLG       S  ADA       KKK +E +      TG ++ ++G   F                       R+VE+    L D  F+  M + M SD  K     A     DPKA+EA   K       +AA  G  +DG   A  GL   +AS+ DP+ +  AM+M++DPAV+K+VE  M +P+F ++MK++ ++P   E + +A A  EEL K+P
Sbjct:    6 FIGVVATLLGF------SCRADAWG---GGKKKDEEPEMP----TGKDAVDLGRAGF-----------------------RQVESARDNLWDKNFKKEMNKLMESDEWKNGATDATDFLQDPKAMEAMAKKTKEYTDFIAA--GPGKDGKRDAAMGLNAASASMMDPNFMKDAMEMMQDPAVMKQVEETMKNPEFMKQMKEVMDNPAMKEQLAKAGANMEELMKNP 193          
BLAST of EWM25318.1 vs. NCBI_GenBank
Match: gi|1210515070|dbj|GAX26033.1| (hypothetical protein FisN_4Hh468 [Fistulifera solaris])

HSP 1 Score: 80.1073 bits (196), Expect = 1.908e-13
Identity = 59/179 (32.96%), Postives = 91/179 (50.84%), Query Frame = 0
Query:   51 TGTESANMGLEAFQDLFANPSGMQELMNMQKDPEIMREVEALLEDPEFQAYMAEYMNSDAVKESLKMAEKLANDPKALEAFQSKMLAAMQGNAEDGTESARTGLETLAASVQDPSGLMQAMDMLKDPAVVKEVESLMADPDFQREMKKMAESPMFAEAMQQAQALTEELQKDPAKLEAF 229
            T  +   +GLE  +   A+P+ + +LM   +DPEIM E + ++E PEFQ  M +   S   K++ K  E+  NDP      ++KM   M+   E   ++A  G+E          G M AM+   DP VV E+  ++ DP F +++K+M  SP F    QQ     +E+ +DPAK   F
Sbjct:   20 TSADDVAIGLEGLRQAAADPAMLAQLMQDMQDPEIMAEAKKMMESPEFQKQMKKLSQSKEFKDTTKQFEQKMNDPNHAAQMEAKMEHMMKVGQEQLKKNAMQGVE----------GAMAAMN---DPQVVAEMSKMLKDPSFAKQLKEMQNSPEF----QQYVNAMQEMLQDPAKRAQF 181          
BLAST of EWM25318.1 vs. NCBI_GenBank
Match: gi|1210516860|dbj|GAX24349.1| (hypothetical protein FisN_4Lh468 [Fistulifera solaris])

HSP 1 Score: 80.1073 bits (196), Expect = 2.026e-13
Identity = 61/179 (34.08%), Postives = 91/179 (50.84%), Query Frame = 0
Query:   51 TGTESANMGLEAFQDLFANPSGMQELMNMQKDPEIMREVEALLEDPEFQAYMAEYMNSDAVKESLKMAEKLANDPKALEAFQSKMLAAMQGNAEDGTESARTGLETLAASVQDPSGLMQAMDMLKDPAVVKEVESLMADPDFQREMKKMAESPMFAEAMQQAQALTEELQKDPAKLEAF 229
            T  +   +GLE  +   A+P+ + +LM   +DPEIM E + ++E PEFQ  M +   S   K++ K  E+  NDP      ++KM   M+   E   ++A  G+E          G M AM+   DP VV E+  ++ DP F +++K+M  SP F    Q   A+ E LQ DPAK   F
Sbjct:  457 TSADDVAIGLEGLRQAAADPAMLAQLMQDMQDPEIMAEAKKMMESPEFQKQMKKLSQSKEFKDTTKQFEQKMNDPNHAAQMEAKMEHMMKVGQEQLKKNAMQGVE----------GAMAAMN---DPQVVAEMSKMLKDPSFAKQLKEMQNSPEF---QQYVNAMQEMLQ-DPAKRAQF 618          
BLAST of EWM25318.1 vs. NCBI_GenBank
Match: gi|1072227643|gb|OEU12382.1| (hypothetical protein FRACYDRAFT_191491 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 61.6178 bits (148), Expect = 4.433e-8
Identity = 45/168 (26.79%), Postives = 86/168 (51.19%), Query Frame = 0
Query:   59 GLEAFQDLFANPSGMQELMNMQKDPEIMREVEALLEDPEFQAYMAEYMNSDAVKESLKMAEKLANDPKALEAFQSKMLAAMQ-GNAEDGTESARTGLETLAASVQDPSGLMQAMDMLKDPAVVKEVESLMADPDFQREMKKMAESPMFAEAMQQAQALTEELQKDPAK 225
            G+   ++   NP+ + +LM   +DPE+M E + ++++P FQ  M E  N+   K++ K +  + NDP    A ++KM   M+ GN +   ++     +  AA              + +P V+ E++ ++ DP+FQ+++ +MA+ P     MQ      +++ KDP K
Sbjct:    7 GMAGLKEATQNPALLAQLMRDLQDPELMAEAKKMMDNPNFQKQMKEMGNTKEFKDATKASVDMMNDPGQAAAMEAKMEHMMKVGNDQLKNKAGNVMEDAFAA--------------MGNPEVMAEMQKMIKDPNFQQQLNEMAKDP----NMQGYMDAMKDMMKDPEK 156          
BLAST of EWM25318.1 vs. NCBI_GenBank
Match: gi|551566266|ref|XP_005769480.1| (hypothetical protein EMIHUDRAFT_445297 [Emiliania huxleyi CCMP1516] >gi|551597240|ref|XP_005780745.1| hypothetical protein EMIHUDRAFT_434721 [Emiliania huxleyi CCMP1516] >gi|485620448|gb|EOD17051.1| hypothetical protein EMIHUDRAFT_445297 [Emiliania huxleyi CCMP1516] >gi|485633445|gb|EOD28316.1| hypothetical protein EMIHUDRAFT_434721 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 62.7734 bits (151), Expect = 5.998e-8
Identity = 58/213 (27.23%), Postives = 96/213 (45.07%), Query Frame = 0
Query:   11 VALLLGVLVLFLVSSSADALFSKLAKKKKQQEQQHEEKAFTGTESANMGLEAFQDLFANPSGMQELMNMQKDPEIMREVEALLEDPEF-QAYMAEYMNSDAVKESLKMAEKLANDPKALEAFQSKM--------LAAMQGNAEDGTE---------------SARTGLETLAASVQDPSGLMQAMDMLKDPAVVKEVESLMADPDFQREMKKM 199
            +A LL  + L     +A+A F +  + K Q E      A       ++ +  ++ L  NP  MQE+M   KDPE+M +   +L+DP++ +A  A+    +A  ++  M +   N P    A  + M                 D +E               +A  G+  L  + +DPS +   M+M+KDP   KEVE+LMADP F+ + ++M
Sbjct:    1 MARLLTCVALICAPLAAEAQFGR--RNKMQGEASGIADATPPPSDVDIAMAGWEQLSRNPDKMQEVMQGMKDPEVMAKAAEMLKDPQYMKAAKAKLAELEAKAKARGMLDAQGN-PVPGMATATAMGQVPGGAAAMGGAAAMGDASEWELRNADRHKAGELNTAELGMANLQQAARDPSVMQGVMEMMKDPNTRKEVEALMADPAFKAQAQQM 210          
The following BLAST results are available for this feature:
BLAST of EWM25318.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585107074|gb|EWM25318.1|0.000e+0100.00Heat shock chaperonin-binding protein [Nannochloro... [more]
gi|553186439|ref|XP_005854418.1|3.064e-17998.46hypothetical protein NGA_0231701 [Nannochloropsis ... [more]
gi|298710435|emb|CBJ25499.1|1.903e-1532.30expressed unknown protein [Ectocarpus siliculosus][more]
gi|1210515070|dbj|GAX26033.1|1.908e-1332.96hypothetical protein FisN_4Hh468 [Fistulifera sola... [more]
gi|1210516860|dbj|GAX24349.1|2.026e-1334.08hypothetical protein FisN_4Lh468 [Fistulifera sola... [more]
gi|1072227643|gb|OEU12382.1|4.433e-826.79hypothetical protein FRACYDRAFT_191491 [Fragilario... [more]
gi|551566266|ref|XP_005769480.1|5.998e-827.23hypothetical protein EMIHUDRAFT_445297 [Emiliania ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5367rna5367Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications