EWM25330.1, cds5337 (CDS) Nannochloropsis gaditana

Overview
NameEWM25330.1
Unique Namecds5337
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:777531..777646 +
Alignment locationCM002465.1:777694..777781 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25330.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100196g6.3054.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:777531..777646 +
CM002465.1supercontigCM002465.1:777694..777781 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM25330.1 vs. NCBI_GenBank
Match: gi|585107089|gb|EWM25330.1| (hypothetical protein Naga_100196g6 [Nannochloropsis gaditana])

HSP 1 Score: 142.124 bits (357), Expect = 5.310e-43
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 
Query:    1 MGRDGWRDNAEKCSMGLYQRLGWTQWEEGEYFECGMDASLGGIGASIGGMYHVHNQLVDSSIAQPCP 67
            MGRDGWRDNAEKCSMGLYQRLGWTQWEEGEYFECGMDASLGGIGASIGGMYHVHNQLVDSSIAQPCP
Sbjct:    1 MGRDGWRDNAEKCSMGLYQRLGWTQWEEGEYFECGMDASLGGIGASIGGMYHVHNQLVDSSIAQPCP 67
The following BLAST results are available for this feature:
BLAST of EWM25330.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585107089|gb|EWM25330.1|5.310e-43100.00hypothetical protein Naga_100196g6 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5350rna5350Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications