EWM25333.1, cds5335 (CDS) Nannochloropsis gaditana

Overview
NameEWM25333.1
Unique Namecds5335
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:773803..774891 -

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Properties
Property NameValue
Protein idEWM25333.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100196g4.3057.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:773803..774891 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25333.1 vs. NCBI_GenBank
Match: gi|585107092|gb|EWM25333.1| (hypothetical protein Naga_100196g4 [Nannochloropsis gaditana])

HSP 1 Score: 728.013 bits (1878), Expect = 0.000e+0
Identity = 362/362 (100.00%), Postives = 362/362 (100.00%), Query Frame = 0
Query:    1 MYLGSVGGAVLGVHFFNKEGNFGACIRALGKLVLYACDRLAYAWSELKFNWKAWRVYERSFKKLESLDKEMQVSKKIKAWDQQYQVSTNLNGWWRKFQTSAKGLEESLKEQAVYWQRTQRLRDEQRQAQMIHQEIQRQQERERARQNGGGVSGGAFQSTSVETEAPASLRPESEQGEGARGQGRGEGVPLTAQGPRLGAGGGWSAPRAQASALTPASGPQPASHPSHPGASPPSHFSSTSSRQGLDTPGAVGGPGGRPPPPSSPGLAFEFNRFVKSLGGATSGISRSSNPAASPVPSPSSPASPPSLTVNSIEGLEGQARSMDAGAPPPHVDEREPFNLSSPSLGSGDVEKKGWEGGSEVNM 362
            MYLGSVGGAVLGVHFFNKEGNFGACIRALGKLVLYACDRLAYAWSELKFNWKAWRVYERSFKKLESLDKEMQVSKKIKAWDQQYQVSTNLNGWWRKFQTSAKGLEESLKEQAVYWQRTQRLRDEQRQAQMIHQEIQRQQERERARQNGGGVSGGAFQSTSVETEAPASLRPESEQGEGARGQGRGEGVPLTAQGPRLGAGGGWSAPRAQASALTPASGPQPASHPSHPGASPPSHFSSTSSRQGLDTPGAVGGPGGRPPPPSSPGLAFEFNRFVKSLGGATSGISRSSNPAASPVPSPSSPASPPSLTVNSIEGLEGQARSMDAGAPPPHVDEREPFNLSSPSLGSGDVEKKGWEGGSEVNM
Sbjct:    1 MYLGSVGGAVLGVHFFNKEGNFGACIRALGKLVLYACDRLAYAWSELKFNWKAWRVYERSFKKLESLDKEMQVSKKIKAWDQQYQVSTNLNGWWRKFQTSAKGLEESLKEQAVYWQRTQRLRDEQRQAQMIHQEIQRQQERERARQNGGGVSGGAFQSTSVETEAPASLRPESEQGEGARGQGRGEGVPLTAQGPRLGAGGGWSAPRAQASALTPASGPQPASHPSHPGASPPSHFSSTSSRQGLDTPGAVGGPGGRPPPPSSPGLAFEFNRFVKSLGGATSGISRSSNPAASPVPSPSSPASPPSLTVNSIEGLEGQARSMDAGAPPPHVDEREPFNLSSPSLGSGDVEKKGWEGGSEVNM 362          
BLAST of EWM25333.1 vs. NCBI_GenBank
Match: gi|553182736|ref|XP_005853777.1| (hypothetical protein NGA_0438200 [Nannochloropsis gaditana CCMP526] >gi|422295288|gb|EKU22587.1| hypothetical protein NGA_0438200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 710.294 bits (1832), Expect = 0.000e+0
Identity = 357/362 (98.62%), Postives = 357/362 (98.62%), Query Frame = 0
Query:    1 MYLGSVGGAVLGVHFFNKEGNFGACIRALGKLVLYACDRLAYAWSELKFNWKAWRVYERSFKKLESLDKEMQVSKKIKAWDQQYQVSTNLNGWWRKFQTSAKGLEESLKEQAVYWQRTQRLRDEQRQAQMIHQEIQRQQERERARQNGGGVSGGAFQSTSVETEAPASLRPESEQGEGARGQGRGEGVPLTAQGPRLGAGGGWSAPRAQASALTPASGPQPASHPSHPGASPPSHFSSTSSRQGLDTPGAVGGPGGRPPPPSSPGLAFEFNRFVKSLGGATSGISRSSNPAASPVPSPSSPASPPSLTVNSIEGLEGQARSMDAGAPPPHVDEREPFNLSSPSLGSGDVEKKGWEGGSEVNM 362
            MYLGSVGGAVLGVHFFNKEGNFGACIRALGKLVLYACDRLAYAWSELKFNWKAWRVYERSFKKLESLDKEMQVSKKIKAWDQQYQVSTNLNGWWRKFQTSAKGLEESLKEQAVYWQRTQRLRDEQRQAQMIHQEIQRQQERERARQNGGGVSGGAFQSTSVETEAPASLRPESEQGEGARGQGRGE  PLTAQGPR GAGGGWSAPRAQASALTPASGPQPASHPSHPGASPPSHFSS SSRQGLDTPGAVGGPGGRPPPPSSPGLAFEFNRFVKSLGGATSGISRSSNPAASPVPSPSSPASPPSLTVNSIEGLEGQARSMDAGAPPPHVDEREPFNLSSPSLGSG VEKKGWEGGSEVNM
Sbjct:    1 MYLGSVGGAVLGVHFFNKEGNFGACIRALGKLVLYACDRLAYAWSELKFNWKAWRVYERSFKKLESLDKEMQVSKKIKAWDQQYQVSTNLNGWWRKFQTSAKGLEESLKEQAVYWQRTQRLRDEQRQAQMIHQEIQRQQERERARQNGGGVSGGAFQSTSVETEAPASLRPESEQGEGARGQGRGE--PLTAQGPRPGAGGGWSAPRAQASALTPASGPQPASHPSHPGASPPSHFSSISSRQGLDTPGAVGGPGGRPPPPSSPGLAFEFNRFVKSLGGATSGISRSSNPAASPVPSPSSPASPPSLTVNSIEGLEGQARSMDAGAPPPHVDEREPFNLSSPSLGSGGVEKKGWEGGSEVNM 360          
BLAST of EWM25333.1 vs. NCBI_GenBank
Match: gi|553187346|ref|XP_005854591.1| (hypothetical protein NGA_0176000 [Nannochloropsis gaditana CCMP526] >gi|422294472|gb|EKU21772.1| hypothetical protein NGA_0176000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 352.058 bits (902), Expect = 1.623e-119
Identity = 166/171 (97.08%), Postives = 166/171 (97.08%), Query Frame = 0
Query:    1 MYLGSVGGAVLGVHFFNKEGNFGACIRALGKLVLYACDRLAYAWSELKFNWKAWRVYERSFKKLESLDKEMQVSKKIKAWDQQYQVSTNLNGWWRKFQTSAKGLEESLKEQAVYWQRTQRLRDEQRQAQMIHQEIQRQQERERARQNGGGVSGGAFQSTSVETEAPASLRP 171
            MYLGSVGGAVLGVHFFNKEGNFGACIRALGKLVLYACDRLAYAWSELKFNWKAWRVYERSFKKLESLDKEMQVSKKIKAWDQQYQVSTNLNGWWRKFQTSAKGLEESLKEQAVYWQRTQRLRDEQRQAQMIHQEIQRQQERERARQNGGGVSGGAFQSTSVETEA     P
Sbjct:    1 MYLGSVGGAVLGVHFFNKEGNFGACIRALGKLVLYACDRLAYAWSELKFNWKAWRVYERSFKKLESLDKEMQVSKKIKAWDQQYQVSTNLNGWWRKFQTSAKGLEESLKEQAVYWQRTQRLRDEQRQAQMIHQEIQRQQERERARQNGGGVSGGAFQSTSVETEARRRFDP 171          
BLAST of EWM25333.1 vs. NCBI_GenBank
Match: gi|873234174|emb|CEM02231.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 81.2629 bits (199), Expect = 1.562e-13
Identity = 34/96 (35.42%), Postives = 62/96 (64.58%), Query Frame = 0
Query:    2 YLGSVGGAVLGVHFFNKEGNFGACIRALGKLVLYACDRLAYAWSELKFNWKAWRVYERSFKKLESLDKEMQVSKKIKAWDQQYQVSTNLNGWWRKF 97
            +LG+  G V  ++ ++K G     +RA G+L + A  +  Y   +LK  ++AW+VYER+FK+ E LDK+ ++  K++A+D+++Q+S N+   W+K 
Sbjct:  112 WLGAAIGLVWAINNYDKPGRVSRWVRATGRLFVLAFYQWRYLVEDLKMKFRAWKVYERAFKRFEDLDKQHKMLDKLQAFDERHQISQNVQTTWKKL 207          
The following BLAST results are available for this feature:
BLAST of EWM25333.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585107092|gb|EWM25333.1|0.000e+0100.00hypothetical protein Naga_100196g4 [Nannochloropsi... [more]
gi|553182736|ref|XP_005853777.1|0.000e+098.62hypothetical protein NGA_0438200 [Nannochloropsis ... [more]
gi|553187346|ref|XP_005854591.1|1.623e-11997.08hypothetical protein NGA_0176000 [Nannochloropsis ... [more]
gi|873234174|emb|CEM02231.1|1.562e-1335.42unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5348rna5348Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications