EWM25436.1, cds5281 (CDS) Nannochloropsis gaditana

Overview
NameEWM25436.1
Unique Namecds5281
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:645671..645714 -
Alignment locationCM002465.1:644538..644836 -
Alignment locationCM002465.1:644036..644253 -
Alignment locationCM002465.1:643293..643784 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25436.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g87.6730.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:645671..645714 -
CM002465.1supercontigCM002465.1:644538..644836 -
CM002465.1supercontigCM002465.1:644036..644253 -
CM002465.1supercontigCM002465.1:643293..643784 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25436.1 vs. NCBI_GenBank
Match: gi|585107197|gb|EWM25436.1| (hypothetical protein Naga_100005g87 [Nannochloropsis gaditana])

HSP 1 Score: 714.531 bits (1843), Expect = 0.000e+0
Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 0
Query:    1 MFLKINLLCALTCIKVVIWQRTAMTWPTTENVRRRSLLLLLIALLAAMIVKANDKARPFTRLQSTTGNVVDTHGQQLDHNEQQRNQETLDDRNGKERQQAKRKRRLQQAASGFDQPLRPNDKVAFLQKIAKGNVDPLELFTRGVKSKAFQAVLKNVEIQHRILKEMPLLAAFDGFRQITGRRLSARETMEGFAIGVQNVIDFAKVAFIKVKDPQQTAATIAKMAADPNPAIQSLFRRAQEGDPAAVEELQDVFNDLHFPGVDMRVLREVRRNHTFEKLLSMPEIMRFIDRNEFASNFFRSDIKETFLKQDPRIIGTNANGIQIDTAATVGSDVVNVAGGTAEKATKGIVP 350
            MFLKINLLCALTCIKVVIWQRTAMTWPTTENVRRRSLLLLLIALLAAMIVKANDKARPFTRLQSTTGNVVDTHGQQLDHNEQQRNQETLDDRNGKERQQAKRKRRLQQAASGFDQPLRPNDKVAFLQKIAKGNVDPLELFTRGVKSKAFQAVLKNVEIQHRILKEMPLLAAFDGFRQITGRRLSARETMEGFAIGVQNVIDFAKVAFIKVKDPQQTAATIAKMAADPNPAIQSLFRRAQEGDPAAVEELQDVFNDLHFPGVDMRVLREVRRNHTFEKLLSMPEIMRFIDRNEFASNFFRSDIKETFLKQDPRIIGTNANGIQIDTAATVGSDVVNVAGGTAEKATKGIVP
Sbjct:    1 MFLKINLLCALTCIKVVIWQRTAMTWPTTENVRRRSLLLLLIALLAAMIVKANDKARPFTRLQSTTGNVVDTHGQQLDHNEQQRNQETLDDRNGKERQQAKRKRRLQQAASGFDQPLRPNDKVAFLQKIAKGNVDPLELFTRGVKSKAFQAVLKNVEIQHRILKEMPLLAAFDGFRQITGRRLSARETMEGFAIGVQNVIDFAKVAFIKVKDPQQTAATIAKMAADPNPAIQSLFRRAQEGDPAAVEELQDVFNDLHFPGVDMRVLREVRRNHTFEKLLSMPEIMRFIDRNEFASNFFRSDIKETFLKQDPRIIGTNANGIQIDTAATVGSDVVNVAGGTAEKATKGIVP 350          
BLAST of EWM25436.1 vs. NCBI_GenBank
Match: gi|553183448|ref|XP_005853898.1| (hypothetical protein NGA_0064120 [Nannochloropsis gaditana CCMP526] >gi|422295162|gb|EKU22461.1| hypothetical protein NGA_0064120 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 187.963 bits (476), Expect = 2.532e-56
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0
Query:   24 MTWPTTENVRRRSLLLLLIALLAAMIVKANDKARPFTRLQSTTGNVVDTHGQQLDHNEQQRNQETLDDRNGKERQQAKRKRRLQQAASGFDQ 115
            MTWPTTENVRRRSLLLLLIALLAAMIVKANDKARPFTRLQSTTGNVVDTHGQQLDHNEQQRNQETLDDRNGKERQQAKRKRRLQQAASGFD 
Sbjct:    1 MTWPTTENVRRRSLLLLLIALLAAMIVKANDKARPFTRLQSTTGNVVDTHGQQLDHNEQQRNQETLDDRNGKERQQAKRKRRLQQAASGFDH 92          
BLAST of EWM25436.1 vs. NCBI_GenBank
Match: gi|585102650|gb|EWM22205.1| (hypothetical protein Naga_100291g6 [Nannochloropsis gaditana])

HSP 1 Score: 171.014 bits (432), Expect = 1.854e-47
Identity = 92/266 (34.59%), Postives = 151/266 (56.77%), Query Frame = 0
Query:   31 NVRRRSLLLLLIALLAAMIVKAND---KARPFTRLQSTTGNVVDTHGQQLDHNEQQRNQETLDDRNGKERQQAKRKRRLQQAASGFDQPLRPNDKVAFLQKIAKGNVDPLELFTRGVKSKAFQAVLKNVEIQHRILKEMPLLAAFDGFRQIT-GRRLSARETMEGFAIGVQNVIDFAKVAFI-KVKDPQQTAATIAKMAADPNPAIQSLFRRAQEGDPAAVEELQDVFNDLHFPGVDMRVLREVRRNHTFEKLLSMPEIMRFIDRN 291
            ++   ++LL+++A+     V A +    +RPF+RLQSTTG    +    ++  ++  +++T DD                          +P+ +  +L  + K   +P+++F   + +K F+A+L N +IQHR+LK+ PLL A  GF  I   RRLSA ET   F+ G+  +++ A  AF  KV +P + +AT+AKMAA  +P IQ+LF+RA+ G+  AVEELQD F + H+ G+D +  RE+ + H  +K   MPE+M FI ++
Sbjct:    5 SLYSSTVLLVILAVFMGCTVHAQEHDRSSRPFSRLQSTTG-ASSSSSSSVNSKQESSDKQTDDDFT------------------------KPSSRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEETKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREISKQHNGDKFKQMPEMMHFIQKD 245          
BLAST of EWM25436.1 vs. NCBI_GenBank
Match: gi|585104564|gb|EWM23494.1| (hypothetical protein Naga_100198g11 [Nannochloropsis gaditana])

HSP 1 Score: 158.303 bits (399), Expect = 3.729e-42
Identity = 80/199 (40.20%), Postives = 127/199 (63.82%), Query Frame = 0
Query:  101 KRKRRLQQAASGFDQPLRPNDKVAFLQKIAKGNVDPLELFTRGVKSKAFQAVLKNVEIQHRILKEMPLLAAFDGFRQITGRRLSARETMEGFAIGVQNVIDFAKVAFIKVKDPQQTAATIAKMAADPNPAIQSLFRRAQEGDPAAVEELQDVFNDLHFPGVDMRVLREVRRNHTFEKLLSMPEIMRFIDRNEFASNFFR 299
            +R   ++ +  G   P+    K AF QK+ K  +D +ELF    KSKAF+++L+NVEIQHRI++ +P+L A  GFR+  GRRL+ +ET  GF+ GV+N+++  K +     +P      IA+++   +P IQ LF+ A E D A+V EL+++     +PGVD+ +L++V  + TF+KLL +PE+ RFID++ + S  FR
Sbjct:  110 ERTEEVKSSLQGLFDPVGSPGKSAFFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHALNPTLMNERIAELSKSDDPEIQDLFKGASENDEASVLELKNLAARDLYPGVDLEILQDVMNSLTFDKLLDIPEMARFIDQDPYISRVFR 308          
BLAST of EWM25436.1 vs. NCBI_GenBank
Match: gi|553185077|ref|XP_005854196.1| (hypothetical protein NGA_0186800 [Nannochloropsis gaditana CCMP526] >gi|422294860|gb|EKU22160.1| hypothetical protein NGA_0186800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 143.28 bits (360), Expect = 1.791e-36
Identity = 93/291 (31.96%), Postives = 146/291 (50.17%), Query Frame = 0
Query:   36 SLLLLLIALLAAMIVKAND---KARPFTRLQSTTGNVVDTHGQQLDHNEQQRNQETLDDRNGKERQQAKRKRRLQQAASGFDQPLRPNDKVAFLQKIAKGNVDPLELFTRGVKSKAFQAVLKNVEIQHRILKEMPLLAAFDGFRQIT-GRRLSARE------------------------------TMEGFAIGVQNVIDFAKVAFI-KVKDPQQTAATIAKMAADPNPAIQSLFRRAQEGDPAAVEELQDVFNDLHFPGVDMRVLREVRRNHTFEKLLSMPEIMRFIDRN 291
            ++LL+++A+     V A +    +RPF+RLQSTTG    +        E   +++T DD                          +P+ +  +L  + K   +P+++F   + +K F+A+L N +IQHR+LK+ PLL A  GF  I   RRLSA E                              T   F+ G+  +++ A  AF  KV +P + +AT+AKMAA  +P IQ+LF+RA+ G+  AVEELQD F + H+ G+D +  RE+ + H  +K   MPE+M FI ++
Sbjct:   10 TVLLVVLAVFMGCTVHAQEHDRSSRPFSRLQSTTGASSSSSSSVTSKQESS-DKQTDDDFT------------------------KPSSRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEEVRWQIRGKRRRKREGNLIYGRGNDETLNAQTKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREITKQHNGDKFKQMPEMMHFIQKD 275          
BLAST of EWM25436.1 vs. NCBI_GenBank
Match: gi|553183764|ref|XP_005853961.1| (hypothetical protein NGA_0461700 [Nannochloropsis gaditana CCMP526] >gi|422295096|gb|EKU22395.1| hypothetical protein NGA_0461700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 98.9821 bits (245), Expect = 2.250e-20
Identity = 56/172 (32.56%), Postives = 94/172 (54.65%), Query Frame = 0
Query:  118 RPNDKVAFLQKIAKGNVDPLELFTRGVKSKAFQAVLKNVEIQHRILKEMPLLAAFDGFRQITGRRLSARETMEGFAIGVQNVIDFAKVAFIKVKDPQQTAATIAKMAADPNPAIQSLFRRAQEGDPAAVEELQDVFNDLHFPGVDMRVLREVRRNHTFEKLLSMPEIMRFID 289
            +P+ ++  +Q   K  +D ++LF     S   +A+L +VE QH+I++ +PLLAAFDGF++ITGRRL    T  GF  G+ +++         +KDP  +   ++++ A+    I   F  A  GD  A++ + +  N   +PGV+  VL+ V  +    K+    EIMR I+
Sbjct:   52 KPDGELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLIN 223          
BLAST of EWM25436.1 vs. NCBI_GenBank
Match: gi|553185360|ref|XP_005854240.1| (hypothetical protein NGA_0024302 [Nannochloropsis gaditana CCMP526] >gi|422294820|gb|EKU22120.1| hypothetical protein NGA_0024302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 94.7449 bits (234), Expect = 9.055e-20
Identity = 45/106 (42.45%), Postives = 70/106 (66.04%), Query Frame = 0
Query:  101 KRKRRLQQAASGFDQPLRPNDKVAFLQKIAKGNVDPLELFTRGVKSKAFQAVLKNVEIQHRILKEMPLLAAFDGFRQITGRRLSARETMEGFAIGVQNVIDFAKVA 206
            +R   ++ +  G   P+    K AF QK+ K  +D +ELF    KSKAF+++L+NVEIQHRI++ +P+L A  GFR+  GRRL+ +ET  GF+ GV+N+++  K +
Sbjct:   56 ERTEEVKSSLQGLFDPVGSPGKSAFFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTS 161          
BLAST of EWM25436.1 vs. NCBI_GenBank
Match: gi|585105441|gb|EWM24107.1| (hypothetical protein Naga_100286g4 [Nannochloropsis gaditana])

HSP 1 Score: 97.4413 bits (241), Expect = 5.674e-19
Identity = 56/172 (32.56%), Postives = 94/172 (54.65%), Query Frame = 0
Query:  118 RPNDKVAFLQKIAKGNVDPLELFTRGVKSKAFQAVLKNVEIQHRILKEMPLLAAFDGFRQITGRRLSARETMEGFAIGVQNVIDFAKVAFIKVKDPQQTAATIAKMAADPNPAIQSLFRRAQEGDPAAVEELQDVFNDLHFPGVDMRVLREVRRNHTFEKLLSMPEIMRFID 289
            +P+ ++  +Q   K  +D ++LF     S   +A+L +VE QH+I++ +PLLAAFDGF++ITGRRL    T  GF  G+ +++         +KDP  +   ++++ A+    I   F  A  GD  A++ + +  N   +PGV+  VL+ V  +    K+    EIMR I+
Sbjct:   52 KPDAELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLIN 223          
The following BLAST results are available for this feature:
BLAST of EWM25436.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585107197|gb|EWM25436.1|0.000e+0100.00hypothetical protein Naga_100005g87 [Nannochlorops... [more]
gi|553183448|ref|XP_005853898.1|2.532e-5698.91hypothetical protein NGA_0064120 [Nannochloropsis ... [more]
gi|585102650|gb|EWM22205.1|1.854e-4734.59hypothetical protein Naga_100291g6 [Nannochloropsi... [more]
gi|585104564|gb|EWM23494.1|3.729e-4240.20hypothetical protein Naga_100198g11 [Nannochlorops... [more]
gi|553185077|ref|XP_005854196.1|1.791e-3631.96hypothetical protein NGA_0186800 [Nannochloropsis ... [more]
gi|553183764|ref|XP_005853961.1|2.250e-2032.56hypothetical protein NGA_0461700 [Nannochloropsis ... [more]
gi|553185360|ref|XP_005854240.1|9.055e-2042.45hypothetical protein NGA_0024302 [Nannochloropsis ... [more]
gi|585105441|gb|EWM24107.1|5.674e-1932.56hypothetical protein Naga_100286g4 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5294rna5294Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications