EWM25356.1, cds5234 (CDS) Nannochloropsis gaditana

Overview
NameEWM25356.1
Unique Namecds5234
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:525548..526327 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25356.1
Productmitochondrial import inner membrane translocase subunit tim23
Orig transcript idgnl|cribi|Naga_100005g34.6650.mrna
GeneTIM23
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:525548..526327 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003397Tim17/Tim22/Tim23/PMP24
Homology
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|585107117|gb|EWM25356.1| (mitochondrial import inner membrane translocase subunit tim23 [Nannochloropsis gaditana])

HSP 1 Score: 530.406 bits (1365), Expect = 0.000e+0
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
Query:    1 MWGSLPLRRVFFASGFTCTLKHDKTTYNKWTLKNCQDQAVALAIQLCPSLSRKISHLFLLSQSSPGMVDNNTSSSYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQAVNPVLSGAISGLLYKSTAAPRTAALASVLGGFGAGMFYVIRGQLDRFFYR 259
            MWGSLPLRRVFFASGFTCTLKHDKTTYNKWTLKNCQDQAVALAIQLCPSLSRKISHLFLLSQSSPGMVDNNTSSSYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQAVNPVLSGAISGLLYKSTAAPRTAALASVLGGFGAGMFYVIRGQLDRFFYR
Sbjct:    1 MWGSLPLRRVFFASGFTCTLKHDKTTYNKWTLKNCQDQAVALAIQLCPSLSRKISHLFLLSQSSPGMVDNNTSSSYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQAVNPVLSGAISGLLYKSTAAPRTAALASVLGGFGAGMFYVIRGQLDRFFYR 259          
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|298712788|emb|CBJ48753.1| (Mitochondrial import inner membrane translocase subunit TIM23 homolog [Ectocarpus siliculosus])

HSP 1 Score: 142.124 bits (357), Expect = 3.160e-38
Identity = 87/195 (44.62%), Postives = 122/195 (62.56%), Query Frame = 0
Query:   61 SQSSPGMVDNNTSSSYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASE-EEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQA-----VNPVLSGAISGLLYKSTAAPRTAALASVLGGFGAGMFYVI 249
            ++ S G+ D  + +S       LP++      NVDL   + +YG A++ +EP+YLDY+IKGRG  ERM   +G+ Y+TGIL GG  G R G+  AP+ R  + LNS+MN AGK GS +GN   V A  Y+ +E+LLDHFE D++    QA     +NP+L+GA +GLLYKS+A PR A +ASV G    G+ Y +
Sbjct:    6 TEESGGVQDPYSDASAKYGPLKLPELQ-----NVDL---SKMYGGAAQGKEPEYLDYNIKGRGFWERMPYNAGALYITGILGGGAAGVREGFAKAPNRRSRVLLNSIMNHAGKKGSFYGNTFAVLATYYTCAETLLDHFEVDQMGPVQQAGLGEIINPLLAGASTGLLYKSSAGPRLALMASVAGLGAVGVAYAV 192          
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|219119101|ref|XP_002180317.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408574|gb|EEC48508.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 131.339 bits (329), Expect = 3.759e-34
Identity = 73/176 (41.48%), Postives = 100/176 (56.82%), Query Frame = 0
Query:   71 NTSSSYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLG-------GHQAVNPVLSGAISGLLYKSTAAPRTAALASVLG 239
            N++ +   +D   P  D    G + L TVAP  GV  +  PDYLDYD KGRG +  MF  +G SY+ G   GG+ G R+G    PS RF ++LNSV+N +G+ GS+ GN  GVFA++YSL E L DH++ ++ LG           V+P     ++G  Y   + PR AALA  LG
Sbjct:    2 NSTGNGEENDTGAPLPDFRTSG-IQLHTVAPALGVIGKNTPDYLDYDTKGRGIIVTMFANAGMSYVLGTTFGGVYGVRQGLVATPSNRFRVKLNSVLNHSGRYGSRAGNTLGVFAVLYSLYEGLADHYDLEETLGVRDISPAAASFVSPAFGAVMAGATYYGPSGPRVAALAGALG 176          
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|635362582|emb|CCI48673.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 130.183 bits (326), Expect = 1.241e-33
Identity = 71/150 (47.33%), Postives = 96/150 (64.00%), Query Frame = 0
Query:   92 GNVDLRTVAPLYGVA--SEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQAVNPVLSGAISGLLYKSTAAPRTAALASVLG 239
            G++D+ TVAP++GVA   ++  DYL+YD  GR  +E +    GS+Y TGI  GG+ G  +G + APSP+F +RLNSVMN A   GSK GN  G  AL+Y   E L D  E ++V+   Q V P+L+ A +GL YKSTA P+   LAS +G
Sbjct:   44 GSIDIGTVAPVFGVAGFDDDGADYLEYDKAGRPFMELVQTSCGSAYFTGIFGGGLYGAAQGLRKAPSPKFKIRLNSVMNQAALRGSKAGNALGCLALIYKGFEQLADTIELERVVKYDQ-VTPILASAATGLFYKSTAGPKAMVLASAIG 192          
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|325188056|emb|CCA22599.1| (Mitochondrial Protein Translocase (MPT) Family puta [Albugo laibachii Nc14])

HSP 1 Score: 133.65 bits (335), Expect = 7.004e-32
Identity = 77/178 (43.26%), Postives = 106/178 (59.55%), Query Frame = 0
Query:   82 NLPKIDLFGGGNVDLRTVAPLYGVASEEE--PDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQAVNPVLSGAISGLLYKSTAAPRTAALASVLGGFGAGMFYVIRGQLDRFF 257
              P +     G++D+ TVAP++GVA  ++   DYL+YD  GR  +E +    GS+Y TGI+ GG+ G  +G + APSP+F +RLNSVMN A   GSK GN  G  AL+Y   E L D  E ++ +   Q V P+L+ A +GL YKSTA P+   LA   GG GAG   ++  Q  R+F
Sbjct:   49 EFPLLPSIPSGSIDIGTVAPVFGVAGFDDNGADYLEYDKAGRPFMELVQTSCGSAYFTGIIGGGLYGATQGLRKAPSPKFKIRLNSVMNQAALRGSKAGNALGCLALIYKGFEQLADTIELERFVKYDQ-VTPILASAATGLFYKSTAGPKAMVLA---GGMGAGAMTLL--QFGRYF 220          
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|397617339|gb|EJK64388.1| (hypothetical protein THAOC_14881 [Thalassiosira oceanica])

HSP 1 Score: 119.398 bits (298), Expect = 2.188e-29
Identity = 70/181 (38.67%), Postives = 101/181 (55.80%), Query Frame = 0
Query:   79 SDDNLPKIDLFGGGNVDLRTVAPLYGVASEE------EPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQAVNPVLSGAISGLLYKSTAAPRTAALASVLGGFGAGMFYVIRGQL 253
            +DD+   +  F   N+ L+TVAP +G++S        +PDYL+YD + RG    MF  SG SY+ G+  GG+ G R G    PS RF ++LNS++N  G+ GS  GN  G  +++YSL E L D ++ D+  G  Q   P+ +GA++G  Y   A PR AALA  +G    G  + I   L
Sbjct:   22 NDDSGAPLPDFNASNIKLQTVAPAFGISSSSLPAGVSQPDYLEYD-QSRGVTTIMFTNSGISYMLGVTLGGLYGLREGLAKTPSSRFKVKLNSILNHCGRNGSVVGNMLGATSILYSLYEGLADTYDLDQYTGPIQPPAPLFAGAMTGATYYMRAGPRVAALAGSIGLASVGGTFAIYSML 201          
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|1210512074|dbj|GAX28929.1| (hypothetical protein FisN_20Lh250 [Fistulifera solaris])

HSP 1 Score: 115.546 bits (288), Expect = 5.159e-28
Identity = 62/134 (46.27%), Postives = 85/134 (63.43%), Query Frame = 0
Query:   73 SSSYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASEE-EPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLG 205
            +SS   SD   P  D F    + L+T+AP  GV +++  PDYLDYD+KGRG    MF  SG +YL GI  GGI G R+G    PS RF +++NSV+N  G+ GS+ GN  GVFA++YS  E + D +E +++LG
Sbjct:    2 NSSADESDSGAPLPD-FRTQGLQLQTIAPALGVINQKASPDYLDYDVKGRGIFSTMFANSGMAYLLGISAGGIYGFRQGLAATPSTRFRVQVNSVLNHCGRYGSRAGNALGVFAVLYSFYEGVSDRYEPEELLG 134          
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|1210525140|dbj|GAX16074.1| (hypothetical protein FisN_20Hh250 [Fistulifera solaris])

HSP 1 Score: 115.161 bits (287), Expect = 7.730e-28
Identity = 62/134 (46.27%), Postives = 85/134 (63.43%), Query Frame = 0
Query:   73 SSSYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASEE-EPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLG 205
            +SS   SD   P  D F    + L+T+AP  GV +++  PDYLDYD+KGRG    MF  SG +YL GI  GGI G R+G    PS RF +++NSV+N  G+ GS+ GN  GVFA++YS  E + D +E +++LG
Sbjct:    2 NSSADESDAGAPLPD-FRTQGLQLQTIAPALGVINQKASPDYLDYDVKGRGIFSTMFANSGMAYLLGISAGGIYGFRQGLAATPSTRFRVQVNSVLNHCGRYGSRAGNALGVFAVLYSFYEGVSDRYEPEELLG 134          
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|698795764|ref|XP_009830911.1| (hypothetical protein H257_07171 [Aphanomyces astaci] >gi|574114487|gb|ETV79975.1| hypothetical protein H257_07171 [Aphanomyces astaci])

HSP 1 Score: 108.612 bits (270), Expect = 2.246e-25
Identity = 72/181 (39.78%), Postives = 102/181 (56.35%), Query Frame = 0
Query:   69 DNNTSSSYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASEEEP---DYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQAVNPVLSGAISGLLYKSTAAPRTAALASVLGGFGAGMF 246
            D ++  +++AS   L   D  G   +DL  +AP++G+A    P   DYL+YD +GRG  ER     G SY  GIL GG +G   G + APS +  +RLNS+ N AG  GS+ GN  G+ ALMYS  + L D  E ++ +   +AV PVL+   +G+LYK+TA  R   +A  +G    G F
Sbjct:   19 DESSFEAFAASSGPLTLPDFGGNSQIDLGAIAPVFGIAGTTAPSAADYLEYDARGRGFHERATHIIGMSYFGGILGGGAIGVVEGIRNAPSSKLKVRLNSLFNAAGHRGSRAGNALGILALMYSSIQELADTAELERFVPVDKAV-PVLAAGATGMLYKATAGTRPMVMAGAIGAVVMGAF 198          
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|673045125|ref|XP_008876523.1| (hypothetical protein H310_11578 [Aphanomyces invadans] >gi|574467911|gb|ETV94932.1| hypothetical protein H310_11578 [Aphanomyces invadans])

HSP 1 Score: 105.145 bits (261), Expect = 5.754e-24
Identity = 72/175 (41.14%), Postives = 100/175 (57.14%), Query Frame = 0
Query:   75 SYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASEEEP---DYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQAVNPVLSGAISGLLYKSTAAPRTAALASVLGGFGAGMF 246
            +++AS   L   D  G  N+DL  +AP++G+A    P   DYL+YD +GRG  ER     G  Y  GIL GG +G   G + APS +  +RLNS+ N AG+ GS+ GN  G+ ALMYS  + L D  E ++ +   +AV PVL+   +G+LYKSTA  R   +A  +G    G F
Sbjct:   24 AFAASSGPLTLPDFGGSSNIDLGAIAPVFGIAGTTAPSAADYLEYDTRGRGFHERATHIIGMGYFGGILGGGAIGVVEGIRNAPSSKLKVRLNSLFNAAGQRGSRAGNALGILALMYSSIQELADTVELERFVLVDKAV-PVLAAGATGMLYKSTAGTRPMLMAGAIGSVVMGAF 197          
The following BLAST results are available for this feature:
BLAST of EWM25356.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107117|gb|EWM25356.1|0.000e+0100.00mitochondrial import inner membrane translocase su... [more]
gi|298712788|emb|CBJ48753.1|3.160e-3844.62Mitochondrial import inner membrane translocase su... [more]
gi|219119101|ref|XP_002180317.1|3.759e-3441.48predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|635362582|emb|CCI48673.1|1.241e-3347.33unnamed protein product [Albugo candida][more]
gi|325188056|emb|CCA22599.1|7.004e-3243.26Mitochondrial Protein Translocase (MPT) Family put... [more]
gi|397617339|gb|EJK64388.1|2.188e-2938.67hypothetical protein THAOC_14881 [Thalassiosira oc... [more]
gi|1210512074|dbj|GAX28929.1|5.159e-2846.27hypothetical protein FisN_20Lh250 [Fistulifera sol... [more]
gi|1210525140|dbj|GAX16074.1|7.730e-2846.27hypothetical protein FisN_20Hh250 [Fistulifera sol... [more]
gi|698795764|ref|XP_009830911.1|2.246e-2539.78hypothetical protein H257_07171 [Aphanomyces astac... [more]
gi|673045125|ref|XP_008876523.1|5.754e-2441.14hypothetical protein H310_11578 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5247rna5247Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications