EWM25356.1, cds5234 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|585107117|gb|EWM25356.1| (mitochondrial import inner membrane translocase subunit tim23 [Nannochloropsis gaditana]) HSP 1 Score: 530.406 bits (1365), Expect = 0.000e+0 Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
Query: 1 MWGSLPLRRVFFASGFTCTLKHDKTTYNKWTLKNCQDQAVALAIQLCPSLSRKISHLFLLSQSSPGMVDNNTSSSYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQAVNPVLSGAISGLLYKSTAAPRTAALASVLGGFGAGMFYVIRGQLDRFFYR 259
MWGSLPLRRVFFASGFTCTLKHDKTTYNKWTLKNCQDQAVALAIQLCPSLSRKISHLFLLSQSSPGMVDNNTSSSYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQAVNPVLSGAISGLLYKSTAAPRTAALASVLGGFGAGMFYVIRGQLDRFFYR
Sbjct: 1 MWGSLPLRRVFFASGFTCTLKHDKTTYNKWTLKNCQDQAVALAIQLCPSLSRKISHLFLLSQSSPGMVDNNTSSSYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQAVNPVLSGAISGLLYKSTAAPRTAALASVLGGFGAGMFYVIRGQLDRFFYR 259
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|298712788|emb|CBJ48753.1| (Mitochondrial import inner membrane translocase subunit TIM23 homolog [Ectocarpus siliculosus]) HSP 1 Score: 142.124 bits (357), Expect = 3.160e-38 Identity = 87/195 (44.62%), Postives = 122/195 (62.56%), Query Frame = 0
Query: 61 SQSSPGMVDNNTSSSYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASE-EEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQA-----VNPVLSGAISGLLYKSTAAPRTAALASVLGGFGAGMFYVI 249
++ S G+ D + +S LP++ NVDL + +YG A++ +EP+YLDY+IKGRG ERM +G+ Y+TGIL GG G R G+ AP+ R + LNS+MN AGK GS +GN V A Y+ +E+LLDHFE D++ QA +NP+L+GA +GLLYKS+A PR A +ASV G G+ Y +
Sbjct: 6 TEESGGVQDPYSDASAKYGPLKLPELQ-----NVDL---SKMYGGAAQGKEPEYLDYNIKGRGFWERMPYNAGALYITGILGGGAAGVREGFAKAPNRRSRVLLNSIMNHAGKKGSFYGNTFAVLATYYTCAETLLDHFEVDQMGPVQQAGLGEIINPLLAGASTGLLYKSSAGPRLALMASVAGLGAVGVAYAV 192
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|219119101|ref|XP_002180317.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408574|gb|EEC48508.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 131.339 bits (329), Expect = 3.759e-34 Identity = 73/176 (41.48%), Postives = 100/176 (56.82%), Query Frame = 0
Query: 71 NTSSSYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLG-------GHQAVNPVLSGAISGLLYKSTAAPRTAALASVLG 239
N++ + +D P D G + L TVAP GV + PDYLDYD KGRG + MF +G SY+ G GG+ G R+G PS RF ++LNSV+N +G+ GS+ GN GVFA++YSL E L DH++ ++ LG V+P ++G Y + PR AALA LG
Sbjct: 2 NSTGNGEENDTGAPLPDFRTSG-IQLHTVAPALGVIGKNTPDYLDYDTKGRGIIVTMFANAGMSYVLGTTFGGVYGVRQGLVATPSNRFRVKLNSVLNHSGRYGSRAGNTLGVFAVLYSLYEGLADHYDLEETLGVRDISPAAASFVSPAFGAVMAGATYYGPSGPRVAALAGALG 176
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|635362582|emb|CCI48673.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 130.183 bits (326), Expect = 1.241e-33 Identity = 71/150 (47.33%), Postives = 96/150 (64.00%), Query Frame = 0
Query: 92 GNVDLRTVAPLYGVA--SEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQAVNPVLSGAISGLLYKSTAAPRTAALASVLG 239
G++D+ TVAP++GVA ++ DYL+YD GR +E + GS+Y TGI GG+ G +G + APSP+F +RLNSVMN A GSK GN G AL+Y E L D E ++V+ Q V P+L+ A +GL YKSTA P+ LAS +G
Sbjct: 44 GSIDIGTVAPVFGVAGFDDDGADYLEYDKAGRPFMELVQTSCGSAYFTGIFGGGLYGAAQGLRKAPSPKFKIRLNSVMNQAALRGSKAGNALGCLALIYKGFEQLADTIELERVVKYDQ-VTPILASAATGLFYKSTAGPKAMVLASAIG 192
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|325188056|emb|CCA22599.1| (Mitochondrial Protein Translocase (MPT) Family puta [Albugo laibachii Nc14]) HSP 1 Score: 133.65 bits (335), Expect = 7.004e-32 Identity = 77/178 (43.26%), Postives = 106/178 (59.55%), Query Frame = 0
Query: 82 NLPKIDLFGGGNVDLRTVAPLYGVASEEE--PDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQAVNPVLSGAISGLLYKSTAAPRTAALASVLGGFGAGMFYVIRGQLDRFF 257
P + G++D+ TVAP++GVA ++ DYL+YD GR +E + GS+Y TGI+ GG+ G +G + APSP+F +RLNSVMN A GSK GN G AL+Y E L D E ++ + Q V P+L+ A +GL YKSTA P+ LA GG GAG ++ Q R+F
Sbjct: 49 EFPLLPSIPSGSIDIGTVAPVFGVAGFDDNGADYLEYDKAGRPFMELVQTSCGSAYFTGIIGGGLYGATQGLRKAPSPKFKIRLNSVMNQAALRGSKAGNALGCLALIYKGFEQLADTIELERFVKYDQ-VTPILASAATGLFYKSTAGPKAMVLA---GGMGAGAMTLL--QFGRYF 220
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|397617339|gb|EJK64388.1| (hypothetical protein THAOC_14881 [Thalassiosira oceanica]) HSP 1 Score: 119.398 bits (298), Expect = 2.188e-29 Identity = 70/181 (38.67%), Postives = 101/181 (55.80%), Query Frame = 0
Query: 79 SDDNLPKIDLFGGGNVDLRTVAPLYGVASEE------EPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQAVNPVLSGAISGLLYKSTAAPRTAALASVLGGFGAGMFYVIRGQL 253
+DD+ + F N+ L+TVAP +G++S +PDYL+YD + RG MF SG SY+ G+ GG+ G R G PS RF ++LNS++N G+ GS GN G +++YSL E L D ++ D+ G Q P+ +GA++G Y A PR AALA +G G + I L
Sbjct: 22 NDDSGAPLPDFNASNIKLQTVAPAFGISSSSLPAGVSQPDYLEYD-QSRGVTTIMFTNSGISYMLGVTLGGLYGLREGLAKTPSSRFKVKLNSILNHCGRNGSVVGNMLGATSILYSLYEGLADTYDLDQYTGPIQPPAPLFAGAMTGATYYMRAGPRVAALAGSIGLASVGGTFAIYSML 201
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|1210512074|dbj|GAX28929.1| (hypothetical protein FisN_20Lh250 [Fistulifera solaris]) HSP 1 Score: 115.546 bits (288), Expect = 5.159e-28 Identity = 62/134 (46.27%), Postives = 85/134 (63.43%), Query Frame = 0
Query: 73 SSSYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASEE-EPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLG 205
+SS SD P D F + L+T+AP GV +++ PDYLDYD+KGRG MF SG +YL GI GGI G R+G PS RF +++NSV+N G+ GS+ GN GVFA++YS E + D +E +++LG
Sbjct: 2 NSSADESDSGAPLPD-FRTQGLQLQTIAPALGVINQKASPDYLDYDVKGRGIFSTMFANSGMAYLLGISAGGIYGFRQGLAATPSTRFRVQVNSVLNHCGRYGSRAGNALGVFAVLYSFYEGVSDRYEPEELLG 134
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|1210525140|dbj|GAX16074.1| (hypothetical protein FisN_20Hh250 [Fistulifera solaris]) HSP 1 Score: 115.161 bits (287), Expect = 7.730e-28 Identity = 62/134 (46.27%), Postives = 85/134 (63.43%), Query Frame = 0
Query: 73 SSSYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASEE-EPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLG 205
+SS SD P D F + L+T+AP GV +++ PDYLDYD+KGRG MF SG +YL GI GGI G R+G PS RF +++NSV+N G+ GS+ GN GVFA++YS E + D +E +++LG
Sbjct: 2 NSSADESDAGAPLPD-FRTQGLQLQTIAPALGVINQKASPDYLDYDVKGRGIFSTMFANSGMAYLLGISAGGIYGFRQGLAATPSTRFRVQVNSVLNHCGRYGSRAGNALGVFAVLYSFYEGVSDRYEPEELLG 134
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|698795764|ref|XP_009830911.1| (hypothetical protein H257_07171 [Aphanomyces astaci] >gi|574114487|gb|ETV79975.1| hypothetical protein H257_07171 [Aphanomyces astaci]) HSP 1 Score: 108.612 bits (270), Expect = 2.246e-25 Identity = 72/181 (39.78%), Postives = 102/181 (56.35%), Query Frame = 0
Query: 69 DNNTSSSYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASEEEP---DYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQAVNPVLSGAISGLLYKSTAAPRTAALASVLGGFGAGMF 246
D ++ +++AS L D G +DL +AP++G+A P DYL+YD +GRG ER G SY GIL GG +G G + APS + +RLNS+ N AG GS+ GN G+ ALMYS + L D E ++ + +AV PVL+ +G+LYK+TA R +A +G G F
Sbjct: 19 DESSFEAFAASSGPLTLPDFGGNSQIDLGAIAPVFGIAGTTAPSAADYLEYDARGRGFHERATHIIGMSYFGGILGGGAIGVVEGIRNAPSSKLKVRLNSLFNAAGHRGSRAGNALGILALMYSSIQELADTAELERFVPVDKAV-PVLAAGATGMLYKATAGTRPMVMAGAIGAVVMGAF 198
BLAST of EWM25356.1 vs. NCBI_GenBank
Match: gi|673045125|ref|XP_008876523.1| (hypothetical protein H310_11578 [Aphanomyces invadans] >gi|574467911|gb|ETV94932.1| hypothetical protein H310_11578 [Aphanomyces invadans]) HSP 1 Score: 105.145 bits (261), Expect = 5.754e-24 Identity = 72/175 (41.14%), Postives = 100/175 (57.14%), Query Frame = 0
Query: 75 SYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASEEEP---DYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQAVNPVLSGAISGLLYKSTAAPRTAALASVLGGFGAGMF 246
+++AS L D G N+DL +AP++G+A P DYL+YD +GRG ER G Y GIL GG +G G + APS + +RLNS+ N AG+ GS+ GN G+ ALMYS + L D E ++ + +AV PVL+ +G+LYKSTA R +A +G G F
Sbjct: 24 AFAASSGPLTLPDFGGSSNIDLGAIAPVFGIAGTTAPSAADYLEYDTRGRGFHERATHIIGMGYFGGILGGGAIGVVEGIRNAPSSKLKVRLNSLFNAAGQRGSRAGNALGILALMYSSIQELADTVELERFVLVDKAV-PVLAAGATGMLYKSTAGTRPMLMAGAIGSVVMGAF 197 The following BLAST results are available for this feature:
BLAST of EWM25356.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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