EWM25481.1, cds5191 (CDS) Nannochloropsis gaditana

Overview
NameEWM25481.1
Unique Namecds5191
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:413598..414791 -

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Properties
Property NameValue
Protein idEWM25481.1
ProductSix-bladed beta-propeller, TolB
Orig transcript idgnl|cribi|Naga_100583g2.5691.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:413598..414791 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
Homology
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BLAST of EWM25481.1 vs. NCBI_GenBank
Match: gi|585107245|gb|EWM25481.1| (Six-bladed beta-propeller, TolB [Nannochloropsis gaditana])

HSP 1 Score: 794.653 bits (2051), Expect = 0.000e+0
Identity = 397/397 (100.00%), Postives = 397/397 (100.00%), Query Frame = 0 
Query:    1 MAGPSTSVTTYNAKKRKPAGCIEETPIIQRLLGSNSAWLRIWNEDIEGEDIDSEIAFSPQGRYAAVSLQGGSVLIWDLSTLPHVVLRLDLPPHMPLQTQATVPRRSSKSRGRGGRGRGRGGGSSGDRAVENDVEYVVVGLSWSSRAHKLLVTYHQRGGGSASSSYLCLWHLPSAAVEGHAYFPDCLIGPAQLSPVDDSLCAYFLSGSVCLRLQHLRGSQPAQEGREVLLSPSREGAGGTLGSGDGHRLGLCAFGRDGRSLFCVSARERRVFKVDTDSLAVLARSPEILAGAKLVVLKTLMSRDGSCLFVFSNRAAHLLETHGLRAAEAVGDFGAIKVEWGCWSVGPSRNLGPGEGGGRRRRGGTWNSWWWWVSPVPSAATACRSGCSFGGSGAWAAA 397
            MAGPSTSVTTYNAKKRKPAGCIEETPIIQRLLGSNSAWLRIWNEDIEGEDIDSEIAFSPQGRYAAVSLQGGSVLIWDLSTLPHVVLRLDLPPHMPLQTQATVPRRSSKSRGRGGRGRGRGGGSSGDRAVENDVEYVVVGLSWSSRAHKLLVTYHQRGGGSASSSYLCLWHLPSAAVEGHAYFPDCLIGPAQLSPVDDSLCAYFLSGSVCLRLQHLRGSQPAQEGREVLLSPSREGAGGTLGSGDGHRLGLCAFGRDGRSLFCVSARERRVFKVDTDSLAVLARSPEILAGAKLVVLKTLMSRDGSCLFVFSNRAAHLLETHGLRAAEAVGDFGAIKVEWGCWSVGPSRNLGPGEGGGRRRRGGTWNSWWWWVSPVPSAATACRSGCSFGGSGAWAAA
Sbjct:    1 MAGPSTSVTTYNAKKRKPAGCIEETPIIQRLLGSNSAWLRIWNEDIEGEDIDSEIAFSPQGRYAAVSLQGGSVLIWDLSTLPHVVLRLDLPPHMPLQTQATVPRRSSKSRGRGGRGRGRGGGSSGDRAVENDVEYVVVGLSWSSRAHKLLVTYHQRGGGSASSSYLCLWHLPSAAVEGHAYFPDCLIGPAQLSPVDDSLCAYFLSGSVCLRLQHLRGSQPAQEGREVLLSPSREGAGGTLGSGDGHRLGLCAFGRDGRSLFCVSARERRVFKVDTDSLAVLARSPEILAGAKLVVLKTLMSRDGSCLFVFSNRAAHLLETHGLRAAEAVGDFGAIKVEWGCWSVGPSRNLGPGEGGGRRRRGGTWNSWWWWVSPVPSAATACRSGCSFGGSGAWAAA 397
The following BLAST results are available for this feature:
BLAST of EWM25481.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585107245|gb|EWM25481.1|0.000e+0100.00Six-bladed beta-propeller, TolB [Nannochloropsis g... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5203rna5203Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications