EWM30153.1, cds519 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|585112809|gb|EWM30153.1| (50s ribosomal protein l28 [Nannochloropsis gaditana]) HSP 1 Score: 271.552 bits (693), Expect = 2.372e-92 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 Query: 1 MKAFSFLMVFLSVALAQAFLAPATFQVPRAMDALSPSPVAPARKSLMVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLHQFQAQH 132 MKAFSFLMVFLSVALAQAFLAPATFQVPRAMDALSPSPVAPARKSLMVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLHQFQAQH Sbjct: 1 MKAFSFLMVFLSVALAQAFLAPATFQVPRAMDALSPSPVAPARKSLMVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLHQFQAQH 132
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|676397105|ref|XP_009041830.1| (hypothetical protein AURANDRAFT_39327, partial [Aureococcus anophagefferens] >gi|323447585|gb|EGB03501.1| hypothetical protein AURANDRAFT_39327, partial [Aureococcus anophagefferens]) HSP 1 Score: 103.219 bits (256), Expect = 6.361e-26 Identity = 46/97 (47.42%), Postives = 69/97 (71.13%), Query Frame = 0 Query: 32 DALSPSPVAPARKSLMVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLHQF 128 +ALS +PV + M+ R C++ GKR N + +V+FSH RN K Q VNL ++R+WW+EG+KFV++R+STK +T+ KYGL K K++VDL++F Sbjct: 22 NALSVAPVRQTASAAPEMKFRVCDMTGKRRNAKAMTVTFSHTRNHKVQKVNLQDRRLWWSEGNKFVQMRVSTKALKTIAKYGLGKTAKKYDVDLNEF 118
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|298713094|emb|CBJ48869.1| (50S ribosomal protein L28 [Ectocarpus siliculosus]) HSP 1 Score: 102.449 bits (254), Expect = 1.429e-25 Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 0 Query: 8 MVFLSVALAQAF-LAPATFQVPRAMDALSPSPVAPARKSLMVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLHQFQA 130 M L LA F +AP+ F A ++ A + S + MR R C+LLGK+ NR+ R V+FSH R K Q +NL ++++W EG +FVRLRLSTK +T+ KYGLNKA KF +DL +F A Sbjct: 10 MAVLFCQLASGFMIAPSAF----AGSSVVSKSSATSPTSSLQMRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFTA 129
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|1210520241|dbj|GAX21124.1| (large subunit ribosomal protein L28 [Fistulifera solaris]) HSP 1 Score: 92.8189 bits (229), Expect = 7.635e-22 Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 0 Query: 45 SLMVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYG-LNKAFAKFEVDLHQF 128 S M MR R C+LLGK NRQ R V+FSH RNKK Q VNL KR + E ++ VRLRLSTKG +TV KYG ++KA KFE+DL +F Sbjct: 38 SNMQMRARVCDLLGKTPNRQARVVTFSHKRNKKVQEVNLQWKRFFSEELNRNVRLRLSTKGIKTVNKYGSIDKAAKKFELDLAKF 122
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|1210529124|dbj|GAX12270.1| (large subunit ribosomal protein L28 [Fistulifera solaris]) HSP 1 Score: 90.8929 bits (224), Expect = 1.601e-21 Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 0 Query: 47 MVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYG-LNKAFAKFEVDLHQF 128 M MR R C+LLGK NRQ R V+FSH RNKK Q VNL KR + E ++ VRLRLSTKG +TV KYG ++KA KFE+DL +F Sbjct: 1 MQMRARVCDLLGKTPNRQARVVTFSHKRNKKVQEVNLQWKRFFSEELNRNVRLRLSTKGIKTVNKYGSIDKAAKKFELDLAKF 83
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|914995105|ref|XP_013246528.1| (50S ribosomal protein L28, putative [Eimeria acervulina] >gi|557116541|emb|CDI84524.1| 50S ribosomal protein L28, putative [Eimeria acervulina]) HSP 1 Score: 90.8929 bits (224), Expect = 3.072e-19 Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 0 Query: 47 MVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDL 125 +++ R+C LLGK NR+ RS+S S +R + Q VNL KR+WWAEG +VRLRLS KG +T+KKYGL +A KF+++L Sbjct: 161 IILPARRCMLLGKMDNRKARSISHSGVRTHRVQRVNLAWKRLWWAEGGHYVRLRLSMKGLKTIKKYGLQRAADKFKLNL 239
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|1026774650|gb|OAE33704.1| (hypothetical protein AXG93_2651s1160 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 85.8853 bits (211), Expect = 4.925e-19 Identity = 49/100 (49.00%), Postives = 66/100 (66.00%), Query Frame = 0 Query: 33 ALSPSPV--APARKSLMV--MRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLHQF 128 +LS S V AP+ SL+V + RKC+L GK+AN +VSFS+ R KK QG NL KR+WW E ++FV+LRLSTK +TV+K GL+ + +DL F Sbjct: 31 SLSTSRVTCAPSNSSLLVTPLASRKCDLTGKKANNG-YNVSFSNHRTKKLQGANLQYKRLWWEEANRFVKLRLSTKALKTVEKKGLSTMAKEAGIDLLDF 129
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|557235110|emb|CDJ52719.1| (50S ribosomal protein L28, putative [Eimeria brunetti]) HSP 1 Score: 88.5817 bits (218), Expect = 6.800e-19 Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 0 Query: 47 MVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLH 126 +V+ R+C LLGK NR+ RS+S S +R + Q +NL KR+WWAE +VRLRLS KG +T+KKYGL +A KF+++L+ Sbjct: 104 IVLPARRCMLLGKMDNRKARSISHSGVRTHRVQKLNLRWKRLWWAEAGHYVRLRLSMKGLKTIKKYGLQRAANKFKLNLN 183
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|659076069|ref|XP_008438484.1| (PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo]) HSP 1 Score: 85.5001 bits (210), Expect = 1.246e-18 Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 0 Query: 34 LSPSPVAPA--RKSLMVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLHQ 127 +SPSP++PA R SL + R C GK+AN++ VSFS+ + KK Q VNL K+VWW G +FV+LRLSTK +T++K GL+ K +DL + Sbjct: 55 ISPSPISPAPLRPSLQPIARRICPFTGKKANKK-NLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 149
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|1200490322|gb|OUW04783.1| (50S ribosomal protein L28 [Synechococcus sp. TMED155]) HSP 1 Score: 81.6481 bits (200), Expect = 5.218e-18 Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 0 Query: 52 RKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLHQF 128 R C+L GKRAN +VS SH+R KK Q VNL E+R+WWAEG+++VRLR+ST RT++K GL + VDL +F Sbjct: 3 RVCQLTGKRANNGM-AVSHSHVRTKKLQXVNLQERRLWWAEGNRWVRLRVSTSAXRTIQKKGLGAYAKQLGVDLSKF 78 The following BLAST results are available for this feature:
BLAST of EWM30153.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|