EWM30153.1, cds519 (CDS) Nannochloropsis gaditana

Overview
NameEWM30153.1
Unique Namecds519
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1306920..1307012 -
Alignment locationCM002455.1:1306281..1306586 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30153.1
Product50s ribosomal protein l28
Orig transcript idgnl|cribi|Naga_100115g6.6578.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1306920..1307012 -
CM002455.1supercontigCM002455.1:1306281..1306586 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR026569Ribo_L28/L24
IPR001383Ribosomal_L28
Homology
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|585112809|gb|EWM30153.1| (50s ribosomal protein l28 [Nannochloropsis gaditana])

HSP 1 Score: 271.552 bits (693), Expect = 2.372e-92
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
Query:    1 MKAFSFLMVFLSVALAQAFLAPATFQVPRAMDALSPSPVAPARKSLMVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLHQFQAQH 132
            MKAFSFLMVFLSVALAQAFLAPATFQVPRAMDALSPSPVAPARKSLMVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLHQFQAQH
Sbjct:    1 MKAFSFLMVFLSVALAQAFLAPATFQVPRAMDALSPSPVAPARKSLMVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLHQFQAQH 132          
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|676397105|ref|XP_009041830.1| (hypothetical protein AURANDRAFT_39327, partial [Aureococcus anophagefferens] >gi|323447585|gb|EGB03501.1| hypothetical protein AURANDRAFT_39327, partial [Aureococcus anophagefferens])

HSP 1 Score: 103.219 bits (256), Expect = 6.361e-26
Identity = 46/97 (47.42%), Postives = 69/97 (71.13%), Query Frame = 0
Query:   32 DALSPSPVAPARKSLMVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLHQF 128
            +ALS +PV     +   M+ R C++ GKR N +  +V+FSH RN K Q VNL ++R+WW+EG+KFV++R+STK  +T+ KYGL K   K++VDL++F
Sbjct:   22 NALSVAPVRQTASAAPEMKFRVCDMTGKRRNAKAMTVTFSHTRNHKVQKVNLQDRRLWWSEGNKFVQMRVSTKALKTIAKYGLGKTAKKYDVDLNEF 118          
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|298713094|emb|CBJ48869.1| (50S ribosomal protein L28 [Ectocarpus siliculosus])

HSP 1 Score: 102.449 bits (254), Expect = 1.429e-25
Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 0
Query:    8 MVFLSVALAQAF-LAPATFQVPRAMDALSPSPVAPARKSLMVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLHQFQA 130
            M  L   LA  F +AP+ F    A  ++     A +  S + MR R C+LLGK+ NR+ R V+FSH R  K Q +NL  ++++W EG +FVRLRLSTK  +T+ KYGLNKA  KF +DL +F A
Sbjct:   10 MAVLFCQLASGFMIAPSAF----AGSSVVSKSSATSPTSSLQMRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFTA 129          
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|1210520241|dbj|GAX21124.1| (large subunit ribosomal protein L28 [Fistulifera solaris])

HSP 1 Score: 92.8189 bits (229), Expect = 7.635e-22
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 0
Query:   45 SLMVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYG-LNKAFAKFEVDLHQF 128
            S M MR R C+LLGK  NRQ R V+FSH RNKK Q VNL  KR +  E ++ VRLRLSTKG +TV KYG ++KA  KFE+DL +F
Sbjct:   38 SNMQMRARVCDLLGKTPNRQARVVTFSHKRNKKVQEVNLQWKRFFSEELNRNVRLRLSTKGIKTVNKYGSIDKAAKKFELDLAKF 122          
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|1210529124|dbj|GAX12270.1| (large subunit ribosomal protein L28 [Fistulifera solaris])

HSP 1 Score: 90.8929 bits (224), Expect = 1.601e-21
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 0
Query:   47 MVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYG-LNKAFAKFEVDLHQF 128
            M MR R C+LLGK  NRQ R V+FSH RNKK Q VNL  KR +  E ++ VRLRLSTKG +TV KYG ++KA  KFE+DL +F
Sbjct:    1 MQMRARVCDLLGKTPNRQARVVTFSHKRNKKVQEVNLQWKRFFSEELNRNVRLRLSTKGIKTVNKYGSIDKAAKKFELDLAKF 83          
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|914995105|ref|XP_013246528.1| (50S ribosomal protein L28, putative [Eimeria acervulina] >gi|557116541|emb|CDI84524.1| 50S ribosomal protein L28, putative [Eimeria acervulina])

HSP 1 Score: 90.8929 bits (224), Expect = 3.072e-19
Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 0
Query:   47 MVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDL 125
            +++  R+C LLGK  NR+ RS+S S +R  + Q VNL  KR+WWAEG  +VRLRLS KG +T+KKYGL +A  KF+++L
Sbjct:  161 IILPARRCMLLGKMDNRKARSISHSGVRTHRVQRVNLAWKRLWWAEGGHYVRLRLSMKGLKTIKKYGLQRAADKFKLNL 239          
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|1026774650|gb|OAE33704.1| (hypothetical protein AXG93_2651s1160 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 85.8853 bits (211), Expect = 4.925e-19
Identity = 49/100 (49.00%), Postives = 66/100 (66.00%), Query Frame = 0
Query:   33 ALSPSPV--APARKSLMV--MRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLHQF 128
            +LS S V  AP+  SL+V  +  RKC+L GK+AN    +VSFS+ R KK QG NL  KR+WW E ++FV+LRLSTK  +TV+K GL+    +  +DL  F
Sbjct:   31 SLSTSRVTCAPSNSSLLVTPLASRKCDLTGKKANNG-YNVSFSNHRTKKLQGANLQYKRLWWEEANRFVKLRLSTKALKTVEKKGLSTMAKEAGIDLLDF 129          
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|557235110|emb|CDJ52719.1| (50S ribosomal protein L28, putative [Eimeria brunetti])

HSP 1 Score: 88.5817 bits (218), Expect = 6.800e-19
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 0
Query:   47 MVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLH 126
            +V+  R+C LLGK  NR+ RS+S S +R  + Q +NL  KR+WWAE   +VRLRLS KG +T+KKYGL +A  KF+++L+
Sbjct:  104 IVLPARRCMLLGKMDNRKARSISHSGVRTHRVQKLNLRWKRLWWAEAGHYVRLRLSMKGLKTIKKYGLQRAANKFKLNLN 183          
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|659076069|ref|XP_008438484.1| (PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo])

HSP 1 Score: 85.5001 bits (210), Expect = 1.246e-18
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 0
Query:   34 LSPSPVAPA--RKSLMVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLHQ 127
            +SPSP++PA  R SL  +  R C   GK+AN++   VSFS+ + KK Q VNL  K+VWW  G +FV+LRLSTK  +T++K GL+    K  +DL +
Sbjct:   55 ISPSPISPAPLRPSLQPIARRICPFTGKKANKK-NLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 149          
BLAST of EWM30153.1 vs. NCBI_GenBank
Match: gi|1200490322|gb|OUW04783.1| (50S ribosomal protein L28 [Synechococcus sp. TMED155])

HSP 1 Score: 81.6481 bits (200), Expect = 5.218e-18
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 0
Query:   52 RKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLHQF 128
            R C+L GKRAN    +VS SH+R KK Q VNL E+R+WWAEG+++VRLR+ST   RT++K GL     +  VDL +F
Sbjct:    3 RVCQLTGKRANNGM-AVSHSHVRTKKLQXVNLQERRLWWAEGNRWVRLRVSTSAXRTIQKKGLGAYAKQLGVDLSKF 78          
The following BLAST results are available for this feature:
BLAST of EWM30153.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112809|gb|EWM30153.1|2.372e-92100.0050s ribosomal protein l28 [Nannochloropsis gaditan... [more]
gi|676397105|ref|XP_009041830.1|6.361e-2647.42hypothetical protein AURANDRAFT_39327, partial [Au... [more]
gi|298713094|emb|CBJ48869.1|1.429e-2545.9750S ribosomal protein L28 [Ectocarpus siliculosus][more]
gi|1210520241|dbj|GAX21124.1|7.635e-2260.00large subunit ribosomal protein L28 [Fistulifera s... [more]
gi|1210529124|dbj|GAX12270.1|1.601e-2160.24large subunit ribosomal protein L28 [Fistulifera s... [more]
gi|914995105|ref|XP_013246528.1|3.072e-1953.1650S ribosomal protein L28, putative [Eimeria acerv... [more]
gi|1026774650|gb|OAE33704.1|4.925e-1949.00hypothetical protein AXG93_2651s1160 [Marchantia p... [more]
gi|557235110|emb|CDJ52719.1|6.800e-1951.2550S ribosomal protein L28, putative [Eimeria brune... [more]
gi|659076069|ref|XP_008438484.1|1.246e-1846.88PREDICTED: 50S ribosomal protein L28, chloroplasti... [more]
gi|1200490322|gb|OUW04783.1|5.218e-1853.2550S ribosomal protein L28 [Synechococcus sp. TMED1... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna519rna519Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications