EWM30157.1, cds517 (CDS) Nannochloropsis gaditana

Overview
NameEWM30157.1
Unique Namecds517
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1302629..1302694 -
Alignment locationCM002455.1:1302407..1302547 -
Alignment locationCM002455.1:1302134..1302273 -
Alignment locationCM002455.1:1301812..1302013 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30157.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100115g3.6582.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1302629..1302694 -
CM002455.1supercontigCM002455.1:1302407..1302547 -
CM002455.1supercontigCM002455.1:1302134..1302273 -
CM002455.1supercontigCM002455.1:1301812..1302013 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM30157.1 vs. NCBI_GenBank
Match: gi|585112813|gb|EWM30157.1| (hypothetical protein Naga_100115g3 [Nannochloropsis gaditana])

HSP 1 Score: 369.392 bits (947), Expect = 1.856e-129
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
Query:    1 MYSMKSIGLSLFLAGMALFSSTTFVDAQVIAQAMVKPLAVRPGGRITATLNFVVSSFASNATDPAIAVGFATLGAQELAALNNKNRTTKGKASMDPLANELVIRGSRISPNKWRPKLRTNESEWYSVAWGIPKEGTLLKKVYKVVCKIRVGKGVERNTVRKVSVTLIAGSYIFEESLDVYIK 182
            MYSMKSIGLSLFLAGMALFSSTTFVDAQVIAQAMVKPLAVRPGGRITATLNFVVSSFASNATDPAIAVGFATLGAQELAALNNKNRTTKGKASMDPLANELVIRGSRISPNKWRPKLRTNESEWYSVAWGIPKEGTLLKKVYKVVCKIRVGKGVERNTVRKVSVTLIAGSYIFEESLDVYIK
Sbjct:    1 MYSMKSIGLSLFLAGMALFSSTTFVDAQVIAQAMVKPLAVRPGGRITATLNFVVSSFASNATDPAIAVGFATLGAQELAALNNKNRTTKGKASMDPLANELVIRGSRISPNKWRPKLRTNESEWYSVAWGIPKEGTLLKKVYKVVCKIRVGKGVERNTVRKVSVTLIAGSYIFEESLDVYIK 182          
BLAST of EWM30157.1 vs. NCBI_GenBank
Match: gi|553183816|ref|XP_005853972.1| (hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526] >gi|422295089|gb|EKU22388.1| hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 83.1889 bits (204), Expect = 9.248e-17
Identity = 57/178 (32.02%), Postives = 91/178 (51.12%), Query Frame = 0
Query:   16 MALFSSTTFVDAQVIAQA---------MVKPLAVRPGGRITATLNFVVSSFASNATDPAIAVGFATLGAQELAALNNKNRTTKGKASMDPLANELVIRGSRISPNKWRPKLRTNESEWYSVAWGIPKEGTLLKKVYKVVCKIRVGKGVERNTV--RKVSVTLIAGSYIFEESLDVYIK 182
            M +FSS     A +++ A          VK L+V+ G + T T +F++S   +N T+    +    L    ++ L++KN T K K S      ++ +R +RISPN WRPK+  N +   +    +P  G +L K YKV  KIR+GKG+   T    ++ V L+ G +I  E   VY++
Sbjct:    1 MKVFSSLLVAVATLLSNAAAQEYTGSVCVKSLSVKAGRQATITTSFLISEVPNNVTEVLYGITVEPL----VSPLSSKNHTAKNKTSKFAGDVDVTLRKTRISPNTWRPKIFANGTGTGTSFLPMPLNGLVLSKQYKVTSKIRIGKGIPSGTYVPFQIFVDLVGGDFITREEGQVYVR 174          
BLAST of EWM30157.1 vs. NCBI_GenBank
Match: gi|585103543|gb|EWM22885.1| (hypothetical protein Naga_100160g3 [Nannochloropsis gaditana])

HSP 1 Score: 75.485 bits (184), Expect = 1.473e-13
Identity = 56/181 (30.94%), Postives = 87/181 (48.07%), Query Frame = 0
Query:   13 LAGMALFSSTTFVDAQVIAQA---------MVKPLAVRPGGRITATLNFVVSSFASNATDPAIAVGFATLGAQELAALNNKNRTTKGKASMDPLANELVIRGSRISPNKWRPKLRTNESEWYSVAWGIPKEGTLLKKVYKVVCKIRVGKGVERNTVRK--VSVTLIAGSYIFEESLDVYIK 182
             A M +FSS     A +++ A          VK L+V+ G + T T +F++S      T+    +    L    + +L+ KN T K K S      ++ +R +RISPN WRPK   N +   +    +P +G +L K YK+  KIR+GKG+   T     V V L+ G  I  E   +Y++
Sbjct:   18 FAIMKVFSSLLVAVATLLSNAAAQEYTGSVCVKSLSVKAGRQATITTSFLISELPDTVTEAFYGITVEPL----VNSLSWKNHTAKNKTSKFAGDVDVTLRKTRISPNTWRPKTFANGTGTGTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGTYVPFLVGVELVGGDLIIMEEGYIYVR 194          
BLAST of EWM30157.1 vs. NCBI_GenBank
Match: gi|585111994|gb|EWM29458.1| (hypothetical protein Naga_100083g24 [Nannochloropsis gaditana])

HSP 1 Score: 70.4774 bits (171), Expect = 9.819e-12
Identity = 53/172 (30.81%), Postives = 79/172 (45.93%), Query Frame = 0
Query:   24 FVDAQVIAQAMVKPLAVRPGGRITATLNFVVS----------SFASNATDPAIAVGFATLGAQELAALNNKNRTTKGKASMDPLANELVIR--GSRISPNKWRPKLRTNESEWYSVAWGIPKEGTLLKKVYKVVCKIRVGKGVERNTVRKVSVTLIAGSY-IFEESLDVYIK 182
            F D   I  + VKP++V+ GGR+T T +F+            +FA      A           +L  L+NKN+T           N   +R   SRI PN WRPKLR+N +   +    IP  G +  + YK++ K R+GK     +V    V    G + + +E LDVY++
Sbjct:   27 FPDFDAIGHSTVKPISVKAGGRVTLTTSFLFLETRRRQLRELAFADEILYWATPNEADIPAYGDLEELSNKNKTKTSHPKSSKHGNSTDVRLVRSRIMPNTWRPKLRSNITGSTNFM-SIPTTGLVALEDYKIINKFRIGKRYPSGSVITFYVYAEYGGFNLLQEFLDVYVR 197          
BLAST of EWM30157.1 vs. NCBI_GenBank
Match: gi|585102369|gb|EWM21985.1| (hypothetical protein Naga_100745g2 [Nannochloropsis gaditana])

HSP 1 Score: 64.6994 bits (156), Expect = 4.863e-9
Identity = 44/136 (32.35%), Postives = 66/136 (48.53%), Query Frame = 0
Query:   28 QVIAQAMVKPLAVRPGGRITATLNFVVSSFASNATDPAIAVGFATLGAQELAALNNKNRTTKGKASMDPLANELVIRGSRISPNKWRPKLRTNESEWYS-----VAWGIPKEGTLLKKVYKVVCKIRVGKGVERNT 158
            +++ Q  +  L V PGG +T + +F+      +    ++ +G      QE +A   +NRT K        A EL  + S + PN WRPK R      YS     V W +P +G +LKK YK+  K+RV +GV   T
Sbjct:  201 EIVTQGFLDSLVVSPGGPLTVSSDFIFVERPESDVFVSLTIG------QEASASGFRNRTQKAIG-----ARELTFKRSTLRPNTWRPKPR------YSIVGNEVVWQLPFDGFVLKKTYKIKWKLRVDRGVTSGT 319          
BLAST of EWM30157.1 vs. NCBI_GenBank
Match: gi|553184967|ref|XP_005854180.1| (hypothetical protein NGA_0188501 [Nannochloropsis gaditana CCMP526] >gi|553192556|ref|XP_005855596.1| hypothetical protein NGA_0188502 [Nannochloropsis gaditana CCMP526] >gi|422293459|gb|EKU20759.1| hypothetical protein NGA_0188502 [Nannochloropsis gaditana CCMP526] >gi|422294881|gb|EKU22181.1| hypothetical protein NGA_0188501 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 56.225 bits (134), Expect = 5.086e-7
Identity = 38/120 (31.67%), Postives = 62/120 (51.67%), Query Frame = 0
Query:   67 AVGFATLGAQELAALNNKNRTTKGKASMDPLANELVIRGSRISPNKWRPKLRTN---ESEWYSVAWGIPKEGTLLKKVYKVVCKIRVGKGVERNTVRKVSVTL-IAGSYIFEESLDVYIK 182
            AV F +L +Q  + + +   +  G ++      ++ +  SRI PN WRPKLR+N    + + SV    P  G ++ K YK++ K R+GK     TV    V +   GS + +E  DVY++
Sbjct:   23 AVSFVSLLSQMKSCIGHPKSSKHGNST------DVRLVRSRIIPNTWRPKLRSNITGSTNFMSV----PTTGLVVLKDYKIINKFRIGKRYPSGTVISFYVFVDYGGSPLLDEVFDVYVR 132          
The following BLAST results are available for this feature:
BLAST of EWM30157.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585112813|gb|EWM30157.1|1.856e-129100.00hypothetical protein Naga_100115g3 [Nannochloropsi... [more]
gi|553183816|ref|XP_005853972.1|9.248e-1732.02hypothetical protein NGA_0434301 [Nannochloropsis ... [more]
gi|585103543|gb|EWM22885.1|1.473e-1330.94hypothetical protein Naga_100160g3 [Nannochloropsi... [more]
gi|585111994|gb|EWM29458.1|9.819e-1230.81hypothetical protein Naga_100083g24 [Nannochlorops... [more]
gi|585102369|gb|EWM21985.1|4.863e-932.35hypothetical protein Naga_100745g2 [Nannochloropsi... [more]
gi|553184967|ref|XP_005854180.1|5.086e-731.67hypothetical protein NGA_0188501 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna517rna517Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications