EWM25506.1, cds5141 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25506.1 vs. NCBI_GenBank
Match: gi|585107272|gb|EWM25506.1| (ribosomal protein s3a [Nannochloropsis gaditana]) HSP 1 Score: 531.946 bits (1369), Expect = 0.000e+0 Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0
Query: 1 MAVGKNQKKVSKGRKGGKKKIVDPFLKKEWYDIKAPGYFKTRKVGKTLITRTTGTKIASEGLKGRVFEVNLAELQGGDEEQGYRKFQLVAEDVKGTDILTNFHGMDLTREKLNSLIKKWQTLIDAHVEAKTTDGYTLRLFAVAFTKRVPGQVSKAAHAQAAQVRAIRKKIVDIIKEKVVNNDLKELVKLFIPEQIGREIERATKGIFPLSVVYLRKVKVLKKPKFDLVKLMEIHEGTTPVDETGAGVDRPEEPALVPEVAGSGGRL 266
MAVGKNQKKVSKGRKGGKKKIVDPFLKKEWYDIKAPGYFKTRKVGKTLITRTTGTKIASEGLKGRVFEVNLAELQGGDEEQGYRKFQLVAEDVKGTDILTNFHGMDLTREKLNSLIKKWQTLIDAHVEAKTTDGYTLRLFAVAFTKRVPGQVSKAAHAQAAQVRAIRKKIVDIIKEKVVNNDLKELVKLFIPEQIGREIERATKGIFPLSVVYLRKVKVLKKPKFDLVKLMEIHEGTTPVDETGAGVDRPEEPALVPEVAGSGGRL
Sbjct: 1 MAVGKNQKKVSKGRKGGKKKIVDPFLKKEWYDIKAPGYFKTRKVGKTLITRTTGTKIASEGLKGRVFEVNLAELQGGDEEQGYRKFQLVAEDVKGTDILTNFHGMDLTREKLNSLIKKWQTLIDAHVEAKTTDGYTLRLFAVAFTKRVPGQVSKAAHAQAAQVRAIRKKIVDIIKEKVVNNDLKELVKLFIPEQIGREIERATKGIFPLSVVYLRKVKVLKKPKFDLVKLMEIHEGTTPVDETGAGVDRPEEPALVPEVAGSGGRL 266
BLAST of EWM25506.1 vs. NCBI_GenBank
Match: gi|301104382|ref|XP_002901276.1| (40S ribosomal protein S3a [Phytophthora infestans T30-4] >gi|262101210|gb|EEY59262.1| 40S ribosomal protein S3a [Phytophthora infestans T30-4]) HSP 1 Score: 314.694 bits (805), Expect = 3.868e-105 Identity = 163/266 (61.28%), Postives = 209/266 (78.57%), Query Frame = 0
Query: 1 MAVGKNQKKVSKGRKGGKKKIVDPFLKKEWYDIKAPGYFKTRKVGKTLITRTTGTKIASEGLKGRVFEVNLAELQGGDEEQGYRKFQLVAEDVKGTDILTNFHGMDLTREKLNSLIKKWQTLIDAHVEAKTTDGYTLRLFAVAFTKRVPGQVSKAAHAQAAQVRAIRKKIVDIIKEKVVNNDLKELVKLFIPEQIGREIERATKGIFPLSVVYLRKVKVLKKPKFDLVKLMEIHEGTTPVDETGAGVDRPEEPALVPEVAGSGGRL 266
MAVGKN K+++KG+KGGKKK+VDPF +K+WYD+KAP F R GKTL+ RT GTKIASEGL+GRVFEV LA+L DE+Q +RK +L AE+++G+ I+T FHGMD TR+KL SLI+KWQTLI+A V+ KTTDGY +RLF +AFTK+ P Q+ K +A+ AQ+RAIRKK+ I+ E+ D+K+L F+PE IG+EIE+AT+GI+PL VY+RK K+LKKPKFDLV+LME+HEG +E GA V R EE LV +AGSGGRL
Sbjct: 1 MAVGKN-KRLTKGKKGGKKKVVDPFSRKDWYDVKAPAIFSERNCGKTLVNRTAGTKIASEGLRGRVFEVCLADLNK-DEDQAFRKIRLCAEEIQGSQIITGFHGMDFTRDKLCSLIRKWQTLIEAFVDVKTTDGYLVRLFCIAFTKKRPNQIKKTTYAKTAQIRAIRKKMTSIMTEEASKCDIKDLFLKFVPEIIGKEIEKATQGIYPLQNVYIRKCKILKKPKFDLVRLMELHEG--GAEEKGAKVAR-EEDQLVESMAGSGGRL 261
BLAST of EWM25506.1 vs. NCBI_GenBank
Match: gi|813150485|ref|XP_012200889.1| (40S ribosomal protein S3a-2 [Saprolegnia parasitica CBS 223.65] >gi|641534502|gb|KDO28449.1| 40S ribosomal protein S3a-2 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 314.309 bits (804), Expect = 6.056e-105 Identity = 164/266 (61.65%), Postives = 208/266 (78.20%), Query Frame = 0
Query: 1 MAVGKNQKKVSKGRKGGKKKIVDPFLKKEWYDIKAPGYFKTRKVGKTLITRTTGTKIASEGLKGRVFEVNLAELQGGDEEQGYRKFQLVAEDVKGTDILTNFHGMDLTREKLNSLIKKWQTLIDAHVEAKTTDGYTLRLFAVAFTKRVPGQVSKAAHAQAAQVRAIRKKIVDIIKEKVVNNDLKELVKLFIPEQIGREIERATKGIFPLSVVYLRKVKVLKKPKFDLVKLMEIHEGTTPVDETGAGVDRPEEPALVPEVAGSGGRL 266
MAVGKN K+++KG+KGGKKK VDPF +K+WYDI+ PG F+ R +GKTL+ RT+GTKIASEGLKGRVFEV LA+L DE+Q +RK +L EDV+GT ++T FHGMD TR+K+ SLIKKWQTLI+A V+ KTTDGYT+RLF +AFTK+ P Q+ K +AQ AQ+RAIRKK+ I+ E+ DLK+L FIPE IG+E+E+A +GIFPL +LRK+KVLKKPKFD+ KLME+HE +E GA V R +E LV +AG+GGRL
Sbjct: 1 MAVGKN-KRLTKGKKGGKKKAVDPFTRKDWYDIRVPGIFQQRTIGKTLVNRTSGTKIASEGLKGRVFEVCLADL-NKDEDQSFRKIRLCCEDVQGTQVVTGFHGMDFTRDKICSLIKKWQTLIEAFVDVKTTDGYTIRLFCIAFTKKRPNQIKKTCYAQTAQIRAIRKKMTTIMTEQASKCDLKDLYLKFIPEIIGKEVEKACQGIFPLQNCFLRKMKVLKKPKFDVTKLMELHE--EGAEEKGAKVVR-DEDLLVQSMAGTGGRL 261
BLAST of EWM25506.1 vs. NCBI_GenBank
Match: gi|675182983|ref|XP_008900376.1| (40S ribosomal protein S3a [Phytophthora parasitica INRA-310] >gi|566031030|gb|ETI53941.1| 40S ribosomal protein S3a [Phytophthora parasitica P1569] >gi|567968675|gb|ETK93801.1| 40S ribosomal protein S3a [Phytophthora parasitica] >gi|567997105|gb|ETL47195.1| 40S ribosomal protein S3a [Phytophthora parasitica] >gi|568026301|gb|ETM00294.1| 40S ribosomal protein S3a [Phytophthora parasitica] >gi|568056791|gb|ETM53497.1| 40S ribosomal protein S3a [Phytophthora parasitica] >gi|568099382|gb|ETN14096.1| 40S ribosomal protein S3a [Phytophthora parasitica INRA-310] >gi|570334676|gb|ETO82624.1| 40S ribosomal protein S3a [Phytophthora parasitica P1976] >gi|570958770|gb|ETP23749.1| 40S ribosomal protein S3a [Phytophthora parasitica CJ01A1] >gi|570994662|gb|ETP51736.1| 40S ribosomal protein S3a [Phytophthora parasitica P10297] >gi|970656442|gb|KUF94454.1| 40S ribosomal protein S1 [Phytophthora nicotianae]) HSP 1 Score: 313.923 bits (803), Expect = 8.315e-105 Identity = 163/266 (61.28%), Postives = 208/266 (78.20%), Query Frame = 0
Query: 1 MAVGKNQKKVSKGRKGGKKKIVDPFLKKEWYDIKAPGYFKTRKVGKTLITRTTGTKIASEGLKGRVFEVNLAELQGGDEEQGYRKFQLVAEDVKGTDILTNFHGMDLTREKLNSLIKKWQTLIDAHVEAKTTDGYTLRLFAVAFTKRVPGQVSKAAHAQAAQVRAIRKKIVDIIKEKVVNNDLKELVKLFIPEQIGREIERATKGIFPLSVVYLRKVKVLKKPKFDLVKLMEIHEGTTPVDETGAGVDRPEEPALVPEVAGSGGRL 266
MAVGKN K+++KG+KGGKKK+VDPF +K+WYD+KAP F R GKTL+ RT GTKIASEGL+GRVFEV LA+L DE+Q +RK +L AE+++G I+T FHGMD TR+KL SLI+KWQTLI+A V+ KTTDGY +RLF +AFTK+ P Q+ K +A+ AQ+RAIRKK+ I+ E+ D+K+L F+PE IG+EIE+AT+GI+PL VY+RK K+LKKPKFDLV+LME+HEG +E GA V R EE LV +AGSGGRL
Sbjct: 1 MAVGKN-KRLTKGKKGGKKKVVDPFSRKDWYDVKAPAIFSERTCGKTLVNRTAGTKIASEGLRGRVFEVCLADLNK-DEDQAFRKIRLCAEEIQGNQIITGFHGMDFTRDKLCSLIRKWQTLIEAFVDVKTTDGYLVRLFCIAFTKKRPNQIKKTTYAKTAQIRAIRKKMTSIMTEEASKCDIKDLFLKFVPEIIGKEIEKATQGIYPLQNVYIRKCKILKKPKFDLVRLMELHEG--GAEEKGAKVAR-EEDQLVESMAGSGGRL 261
BLAST of EWM25506.1 vs. NCBI_GenBank
Match: gi|1173946865|gb|OQR95348.1| (40S ribosomal protein S3a [Thraustotheca clavata]) HSP 1 Score: 313.923 bits (803), Expect = 9.480e-105 Identity = 164/266 (61.65%), Postives = 208/266 (78.20%), Query Frame = 0
Query: 1 MAVGKNQKKVSKGRKGGKKKIVDPFLKKEWYDIKAPGYFKTRKVGKTLITRTTGTKIASEGLKGRVFEVNLAELQGGDEEQGYRKFQLVAEDVKGTDILTNFHGMDLTREKLNSLIKKWQTLIDAHVEAKTTDGYTLRLFAVAFTKRVPGQVSKAAHAQAAQVRAIRKKIVDIIKEKVVNNDLKELVKLFIPEQIGREIERATKGIFPLSVVYLRKVKVLKKPKFDLVKLMEIHEGTTPVDETGAGVDRPEEPALVPEVAGSGGRL 266
MAVGKN K+++KG+KGGKKK VDPF +K+WYDI+ PG F+ R +GKTL+ RT+GTKIASEGLKGRVFEV LA+L DEEQ +RK +L EDV+GT+++T FHGMD TR+K+ SLIKKWQTLI+A V+ KTTDGYT+RLF +AFTK+ P Q+ K +AQ AQ+RAIRKK+ I+ E+ DLK+L FIPE IG+E+E+A +GIFPL ++RK+KVLKKPKFD+ KLME+HE E GA V R E+ LV +AG+GGRL
Sbjct: 1 MAVGKN-KRLTKGKKGGKKKAVDPFSRKDWYDIRVPGIFQQRTIGKTLVNRTSGTKIASEGLKGRVFEVCLADL-NKDEEQSFRKIRLCCEDVQGTNVVTGFHGMDFTRDKICSLIKKWQTLIEAFVDVKTTDGYTIRLFCIAFTKKRPNQIKKTCYAQTAQIRAIRKKMTTIMTEQASKCDLKDLYLKFIPEIIGKEVEKACQGIFPLQNCFVRKMKVLKKPKFDVTKLMELHEEGAA--EKGAKVVRDEDQ-LVESMAGAGGRL 261
BLAST of EWM25506.1 vs. NCBI_GenBank
Match: gi|669168827|ref|XP_008619762.1| (40S ribosomal protein S3a-2 [Saprolegnia diclina VS20] >gi|530728618|gb|EQC26860.1| 40S ribosomal protein S3a-2 [Saprolegnia diclina VS20]) HSP 1 Score: 313.153 bits (801), Expect = 1.692e-104 Identity = 163/266 (61.28%), Postives = 208/266 (78.20%), Query Frame = 0
Query: 1 MAVGKNQKKVSKGRKGGKKKIVDPFLKKEWYDIKAPGYFKTRKVGKTLITRTTGTKIASEGLKGRVFEVNLAELQGGDEEQGYRKFQLVAEDVKGTDILTNFHGMDLTREKLNSLIKKWQTLIDAHVEAKTTDGYTLRLFAVAFTKRVPGQVSKAAHAQAAQVRAIRKKIVDIIKEKVVNNDLKELVKLFIPEQIGREIERATKGIFPLSVVYLRKVKVLKKPKFDLVKLMEIHEGTTPVDETGAGVDRPEEPALVPEVAGSGGRL 266
MAVGKN K+++KG+KGGKKK VDPF +K+WYDI+ PG F+ R +GKTL+ RT+GTKIASEGLKGRVFEV LA+L DE+Q +RK +L EDV+GT ++T FHGMD TR+K+ SLIKKWQTLI+A V+ KTTDGYT+RLF +AFTK+ P Q+ K +AQ AQ+RAIRKK+ I+ E+ DLK+L FIPE IG+E+E+A +GIFPL ++RK+KVLKKPKFD+ KLME+HE +E GA V R +E LV +AG+GGRL
Sbjct: 1 MAVGKN-KRLTKGKKGGKKKAVDPFTRKDWYDIRVPGIFQQRTIGKTLVNRTSGTKIASEGLKGRVFEVCLADL-NKDEDQSFRKIRLCCEDVQGTQVVTGFHGMDFTRDKICSLIKKWQTLIEAFVDVKTTDGYTIRLFCIAFTKKRPNQIKKTCYAQTAQIRAIRKKMTTIMTEQASKCDLKDLYLKFIPEIIGKEVEKACQGIFPLQNCFVRKMKVLKKPKFDVTKLMELHE--EGAEEKGAKVVR-DEDLLVQSMAGTGGRL 261
BLAST of EWM25506.1 vs. NCBI_GenBank
Match: gi|1173946286|gb|OQR94833.1| (40S ribosomal protein S3a [Achlya hypogyna]) HSP 1 Score: 312.768 bits (800), Expect = 2.016e-104 Identity = 163/266 (61.28%), Postives = 207/266 (77.82%), Query Frame = 0
Query: 1 MAVGKNQKKVSKGRKGGKKKIVDPFLKKEWYDIKAPGYFKTRKVGKTLITRTTGTKIASEGLKGRVFEVNLAELQGGDEEQGYRKFQLVAEDVKGTDILTNFHGMDLTREKLNSLIKKWQTLIDAHVEAKTTDGYTLRLFAVAFTKRVPGQVSKAAHAQAAQVRAIRKKIVDIIKEKVVNNDLKELVKLFIPEQIGREIERATKGIFPLSVVYLRKVKVLKKPKFDLVKLMEIHEGTTPVDETGAGVDRPEEPALVPEVAGSGGRL 266
MAVGKN K+++KG+KGGKKK VDPF +K+WYDI+ PG F+ R +GKTL+ RT+GTKIASEGLKGRVFEV LA+L DEEQ +RK +L EDV+GT ++T FHGMD TR+K+ SLIKKWQTLI+A V+ KTTDGYT+RLF +AFTK+ P Q+ K +AQ AQ+RAIRKK+ I+ E+ DLK+L F+PE IG+E+E+A +GIFPL ++RK+KVLKKPKFD+ KLME+HE E GA V R E+ LV +AG+GGRL
Sbjct: 1 MAVGKN-KRLTKGKKGGKKKAVDPFTRKDWYDIRVPGIFQQRTIGKTLVNRTSGTKIASEGLKGRVFEVCLADL-NKDEEQSFRKIRLCCEDVQGTQVVTGFHGMDFTRDKICSLIKKWQTLIEAFVDVKTTDGYTIRLFCIAFTKKRPNQIKKTCYAQTAQIRAIRKKMTTIMTEQASKCDLKDLYLKFVPEIIGKEVEKACQGIFPLQNCFVRKMKVLKKPKFDVTKLMELHEEGAA--EKGAKVVRDEDQ-LVQSMAGAGGRL 261
BLAST of EWM25506.1 vs. NCBI_GenBank
Match: gi|823248801|ref|XP_012457052.1| (PREDICTED: 40S ribosomal protein S3a-like [Gossypium raimondii] >gi|763805323|gb|KJB72261.1| hypothetical protein B456_011G167500 [Gossypium raimondii]) HSP 1 Score: 312.383 bits (799), Expect = 3.805e-104 Identity = 159/265 (60.00%), Postives = 206/265 (77.74%), Query Frame = 0
Query: 1 MAVGKNQKKVSKGRKGGKKKIVDPFLKKEWYDIKAPGYFKTRKVGKTLITRTTGTKIASEGLKGRVFEVNLAELQGGDEEQGYRKFQLVAEDVKGTDILTNFHGMDLTREKLNSLIKKWQTLIDAHVEAKTTDGYTLRLFAVAFTKRVPGQVSKAAHAQAAQVRAIRKKIVDIIKEKVVNNDLKELVKLFIPEQIGREIERATKGIFPLSVVYLRKVKVLKKPKFDLVKLMEIHEGTTPVDETGAGVDRPEEPAL---VPEVAGS 262
MAVGKN K++SKG+KGGKKK DPF KK+WYDIKAP F TR VGKTL+TRT GTKIASEGLK RVFEV+LA+LQGGDE+ YRK +L AEDV+G ++LTNF GM+ T +KL SL++KWQTLI+AHV+ KTTD YTLR+F + FTKR P QV + +AQ++Q+R IR+K+ +I+ + + DLKELV+ FIPE IG+EIE+AT I+PL V++RKVK+LK PKFDL KLME+H + ++ G ++RP + + PEV G+
Sbjct: 1 MAVGKN-KRISKGKKGGKKKAADPFAKKDWYDIKAPSVFTTRNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQGGDEDHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMTAQATSCDLKELVQKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS--EDVGVKLERPADETMAESTPEVVGA 262
BLAST of EWM25506.1 vs. NCBI_GenBank
Match: gi|953495343|emb|CEG43250.1| (40s ribosomal protein s3a [Plasmopara halstedii]) HSP 1 Score: 311.997 bits (798), Expect = 4.147e-104 Identity = 162/266 (60.90%), Postives = 208/266 (78.20%), Query Frame = 0
Query: 1 MAVGKNQKKVSKGRKGGKKKIVDPFLKKEWYDIKAPGYFKTRKVGKTLITRTTGTKIASEGLKGRVFEVNLAELQGGDEEQGYRKFQLVAEDVKGTDILTNFHGMDLTREKLNSLIKKWQTLIDAHVEAKTTDGYTLRLFAVAFTKRVPGQVSKAAHAQAAQVRAIRKKIVDIIKEKVVNNDLKELVKLFIPEQIGREIERATKGIFPLSVVYLRKVKVLKKPKFDLVKLMEIHEGTTPVDETGAGVDRPEEPALVPEVAGSGGRL 266
MAVGKN K+++KG+KGGKKK+VDPF +K+WYDIKAP F R GKTL+ RT GTKIASEGL+GRVFEV LA+L DE+Q +RK +L AE+++G I+T FHGMD TR+KL SLI+KWQTLI+A V+ KTTDGY +RLF +AFTK+ P Q+ K +A+ AQ+RAIRKK+ I+ ++ D+K+L F+PE IG+EIE+AT+GI+PL VY+RK K+LKKPKFDLV+LME+HEG +E GA V R +E LV +AGSGGRL
Sbjct: 1 MAVGKN-KRLTKGKKGGKKKVVDPFTRKDWYDIKAPAIFSERNCGKTLVNRTAGTKIASEGLRGRVFEVCLADL-NKDEDQAFRKIRLCAEEIQGNQIITGFHGMDFTRDKLCSLIRKWQTLIEAFVDVKTTDGYLVRLFCIAFTKKRPNQIKKTTYAKTAQIRAIRKKMTSIMTDEASKCDIKDLFLKFVPEIIGKEIEKATQGIYPLQNVYIRKCKILKKPKFDLVRLMELHEG--GAEEKGAKVVR-QEDQLVESMAGSGGRL 261
BLAST of EWM25506.1 vs. NCBI_GenBank
Match: gi|1029078825|ref|XP_016699569.1| (PREDICTED: 40S ribosomal protein S3a-like [Gossypium hirsutum]) HSP 1 Score: 311.612 bits (797), Expect = 5.764e-104 Identity = 159/265 (60.00%), Postives = 206/265 (77.74%), Query Frame = 0
Query: 1 MAVGKNQKKVSKGRKGGKKKIVDPFLKKEWYDIKAPGYFKTRKVGKTLITRTTGTKIASEGLKGRVFEVNLAELQGGDEEQGYRKFQLVAEDVKGTDILTNFHGMDLTREKLNSLIKKWQTLIDAHVEAKTTDGYTLRLFAVAFTKRVPGQVSKAAHAQAAQVRAIRKKIVDIIKEKVVNNDLKELVKLFIPEQIGREIERATKGIFPLSVVYLRKVKVLKKPKFDLVKLMEIHEGTTPVDETGAGVDRPEEPAL---VPEVAGS 262
MAVGKN K++SKG+KGGKKK DPF KK+WYDIKAP F TR VGKTL+TRT GTKIASEGLK RVFEV+LA+LQGGDE+ YRK +L AEDV+G ++LTNF GM+ T +KL SL++KWQTLI+AHV+ KTTD YTLR+F + FTKR P QV + +AQ++Q+R IR+K+ +I+ + + DLKELV+ FIPE IG+EIE+AT I+PL V++RKVK+LK PKFDL KLME+H + ++ G ++RP + + PEV G+
Sbjct: 1 MAVGKN-KRISKGKKGGKKKAADPFAKKDWYDIKAPSVFTTRNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQGGDEDHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRQKMREIMTAQATSCDLKELVQKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS--EDVGVKLERPADETMAESTPEVVGA 262 The following BLAST results are available for this feature:
BLAST of EWM25506.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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