EWM25551.1, cds5127 (CDS) Nannochloropsis gaditana

Overview
NameEWM25551.1
Unique Namecds5127
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:234882..234958 -
Alignment locationCM002465.1:233867..234659 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25551.1
Productdnase domain containing 3
Orig transcript idgnl|cribi|Naga_100130g3.10554.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:234882..234958 -
CM002465.1supercontigCM002465.1:233867..234659 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0016888endodeoxyribonuclease activity, producing 5'-phosphomonoesters
Vocabulary: INTERPRO
TermDefinition
IPR001130TatD_family
Homology
BLAST of EWM25551.1 vs. NCBI_GenBank
Match: gi|553187227|ref|XP_005854568.1| (dnase domain containing 3 [Nannochloropsis gaditana CCMP526] >gi|422294492|gb|EKU21792.1| dnase domain containing 3 [Nannochloropsis gaditana CCMP526] >gi|585107322|gb|EWM25551.1| dnase domain containing 3 [Nannochloropsis gaditana])

HSP 1 Score: 590.112 bits (1520), Expect = 0.000e+0
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
Query:    1 MFDVHAHLTAQELLPDLDRLLTEAYSVGVRDIVVVSENVRDAALVLNLPPCQNGVRLHKSLGLHPEHACLKSLSTVLNLIRENHTKLACVGEIGLDFSPHILGHDDAEAVKALQRECMRQQVELAYELDLPVNVHSRGAGHHALSLLRETVSASSVADTLKTTERASSQTRARMYEGRVRAVMHAWDGKAKYAAAAAADSQQSIYFSVPPCASRSPVMIKWIERLPLESLLLETDCPALAAVKGEVNVPRNLQLSLQVIGARKGVGLDIVREITRKNAEELFGLQAGKE 289
            MFDVHAHLTAQELLPDLDRLLTEAYSVGVRDIVVVSENVRDAALVLNLPPCQNGVRLHKSLGLHPEHACLKSLSTVLNLIRENHTKLACVGEIGLDFSPHILGHDDAEAVKALQRECMRQQVELAYELDLPVNVHSRGAGHHALSLLRETVSASSVADTLKTTERASSQTRARMYEGRVRAVMHAWDGKAKYAAAAAADSQQSIYFSVPPCASRSPVMIKWIERLPLESLLLETDCPALAAVKGEVNVPRNLQLSLQVIGARKGVGLDIVREITRKNAEELFGLQAGKE
Sbjct:    1 MFDVHAHLTAQELLPDLDRLLTEAYSVGVRDIVVVSENVRDAALVLNLPPCQNGVRLHKSLGLHPEHACLKSLSTVLNLIRENHTKLACVGEIGLDFSPHILGHDDAEAVKALQRECMRQQVELAYELDLPVNVHSRGAGHHALSLLRETVSASSVADTLKTTERASSQTRARMYEGRVRAVMHAWDGKAKYAAAAAADSQQSIYFSVPPCASRSPVMIKWIERLPLESLLLETDCPALAAVKGEVNVPRNLQLSLQVIGARKGVGLDIVREITRKNAEELFGLQAGKE 289          
BLAST of EWM25551.1 vs. NCBI_GenBank
Match: gi|298707840|emb|CBJ30246.1| (TatD DNase domain containing 3 [Ectocarpus siliculosus])

HSP 1 Score: 216.083 bits (549), Expect = 6.986e-66
Identity = 133/292 (45.55%), Postives = 163/292 (55.82%), Query Frame = 0
Query:    1 MFDVHAHLTAQELLPDLDRLLTEAYSVGVRDIVVVSENVRDAALVLNLPPCQNG-------VRLHKSLGLHPEHACLKSLSTVLNLIRENHTKLACVGEIGLDFSPHILGH---DDAEAVKALQRECMRQQVELAYELDLPVNVHSRGAGHHALSLLRETVSASSVADTLKTTERASSQTRARMYEGRVRAVMHAWDGKAKYAAAAAADSQQSIYFSVPPCASRSPVMIKWIERLPLESLLLETDCPALAAVKGEVNVPRNLQLSLQVIGARKGVGLDIVREITRKNAEELF 282
            MFD HAHLT   L   L + L EA + GV  IV VSE++ DA  V+ L    N        +RLH S+G+HPE A L  +  VL LI ++   + CVGE+GLDFS H++G    + AE  K +QRE  R+Q   A EL L VNVHSR AGHHA+SLL+E                          EG  RAV+HA+DGK KYA  AA   +   +FSVPP   RSP     ++ LPLESL+LETD PAL   KG  NVP NL +S   I + KGV  D+V E T  NA  LF
Sbjct:    1 MFDCHAHLTDSSLAEGLQQTLLEAEAAGVTGIVAVSESLDDATPVVELCASINDDASRCRKLRLHPSIGMHPEKADLHKVDDVLELIDKHADTIVCVGEVGLDFSRHLIGESGGERAERAKEVQREVFRRQARRAKELGLAVNVHSRSAGHHAISLLQE--------------------------EGITRAVLHAFDGKPKYAVQAA---KAGYFFSVPPIVCRSPGFQSLVKALPLESLVLETDSPALGPEKGVRNVPGNLSISRDWIASLKGVPADVVAETTTANARRLF 263          
BLAST of EWM25551.1 vs. NCBI_GenBank
Match: gi|929765655|ref|XP_014157808.1| (hypothetical protein SARC_03865 [Sphaeroforma arctica JP610] >gi|906955035|gb|KNC83906.1| hypothetical protein SARC_03865 [Sphaeroforma arctica JP610])

HSP 1 Score: 173.711 bits (439), Expect = 5.138e-50
Identity = 104/234 (44.44%), Postives = 130/234 (55.56%), Query Frame = 0
Query:   56 RLHKS-----LGLHPEHACLKSLSTVLNLIRENHTKLACVGEIGLDFSPHILGHDDAEAVKALQRECMRQQVELAYELDLPVNVHSRGAGHHALSLLRETVSASSVADTLKTTERASSQTRARMYEGRVRAVMHAWDGKAKYAAAAAADSQQSIYFSVPPCASRSPVMIKWIERLPLESLLLETDCPALAAVKGEVNVPRNLQLSLQVIGARKGVGLDIVREITRKNAEELFGL 284
            RLH S     +GLHP  A L+ L  VL LIR+N   L  +GE GLDF+P +LG +D + VK +QR     Q  L+ ELDLP+NVHSR AGHHA+SLL+E                           G  R V+HA+DGK KYA  AA       +FS+PP A RSP   K I +LPL SLL+ETD PAL     + NVP N  ++ QVI   KG+  + V   T +NA +LF L
Sbjct:   15 RLHSSTVKACIGLHPTEANLEILPDVLALIRKNAHDLVGIGECGLDFTPKVLG-NDGDKVKQIQRHVFAAQAALSVELDLPLNVHSRCAGHHAISLLKEA--------------------------GVKRCVLHAFDGKPKYARQAA--ESMGYFFSIPPSAVRSPEKRKLISQLPLSSLLIETDSPALGPTSKDRNVPSNAVIACQVISEVKGISAEEVAHTTTENATKLFKL 219          
BLAST of EWM25551.1 vs. NCBI_GenBank
Match: gi|546305107|ref|XP_005712537.1| (unnamed protein product [Chondrus crispus] >gi|515796154|emb|CDF77498.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 169.474 bits (428), Expect = 1.209e-47
Identity = 108/290 (37.24%), Postives = 153/290 (52.76%), Query Frame = 0
Query:    1 MFDVHAHLTAQELLPDLDRLLTEAYSVGVRDIVVVSENVRDAALVLNLPPCQNGVRLHKSLGLHPEHACL-------KSLSTVLNLIRENHTKLACVGEIGLDFSPHILGHDDAEAV-KALQRECMRQQVELAYELDLPVNVHSRGAGHHALSLLRETVSASSVADTLKTTERASSQTRARMYEGRVRAVMHAWDGKAKYAAAAAADSQQSIYFSVPPCASRSPVMIKWIERLPLESLLLETDCPALAAVKGEVNVPRNLQLSLQVIGARKGVGLDIVREITRKNAEELF 282
            M D HAHLT+   + DL  +LT A + G+  I+ VSE + DA  VLNL     G  LH +LGLHPEH           +LS + +L++   T    +GE+GLD++P +L    + A  K LQ +     + ++ +L LP++VHSR AGHHAL+ + E    + VA                         MHA+DG+A +A  A     + +YFSVPP   R   + K + R+P E LLLE+D PALA  +GE N P NL  + ++I   KGV +  VR+   +N E LF
Sbjct:    1 MIDTHAHLTSPAFISDLPIVLTRARTTGISSIICVSETLSDAHAVLNLTAAHPGF-LHPALGLHPEHVTTLAPAQLSAALSGITSLLQT--TPAVAIGEVGLDYTPRVLSLAASAADAKRLQADAFAHFLSMSQQLALPLSVHSRAAGHHALAHVVEAARRAPVA-----------------------VCMHAFDGRAVHAERALRSVPEGLYFSVPPSVVRDDQLRKLVRRVPTERLLLESDAPALAPSRGERNEPANLVRAAEIIAEVKGVDVAAVRQTLAENTERLF 264          
BLAST of EWM25551.1 vs. NCBI_GenBank
Match: gi|1126216582|ref|XP_019642309.1| (PREDICTED: putative deoxyribonuclease TATDN3 isoform X1 [Branchiostoma belcheri])

HSP 1 Score: 162.925 bits (411), Expect = 3.708e-45
Identity = 103/291 (35.40%), Postives = 153/291 (52.58%), Query Frame = 0
Query:    2 FDVHAHLTAQELLPDLDRLLTEAYSVGVRDIVVVSENVRDAALVLNLPPCQNGVRLHKSLGLHPEHA---------CLKSLSTVLNLIRENHTKLACVGEIGLDFSP-HILGHDDAEAVKALQRECMRQQVELAYELDLPVNVHSRGAGHHALSLLRETVSASSVADTLKTTERASSQTRARMYEGRVRAVMHAWDGKAKYAAAAAADSQQSIYFSVPPCASRSPVMIKWIERLPLESLLLETDCPALAAVKGEVNVPRNLQLSLQVIGARKGVGLDIVREITRKNAEELF 282
             D H H++A+E   DLD ++T A   G+  IV V+E   +A  +L+L        +   LG+HP  A          L+ L  V  +I +N  KL  +GE+GLDF+P ++ G  D    K +QR+   +Q++LA + DLPVNVHSR AG   + LL+E                          +G  + ++HA+DGK   A       Q   +FSVPPC  RS    K ++ +PL++L+LETD PAL  VK E N P N+++S + I   KGV ++ V ++T +NA +LF
Sbjct:    5 IDCHCHISAEEFNEDLDEVITRAKEAGISAIVAVAEFPSEAPRILSLSEKYKDF-IFPCLGVHPVQAEPPDSQRSVTLEDLGQVEPVIGDNVEKLVGIGEVGLDFTPFNVKGDSD----KDVQRQVFARQIDLAKKHDLPVNVHSRSAGRPVIQLLKE--------------------------QGATKVLLHAFDGKVSVALQGV---QSGYFFSVPPCIVRSEQKQKLVKAIPLDNLMLETDSPALGPVKMERNEPMNIKVSCEHIARIKGVSMETVMQVTTQNALKLF 261          
BLAST of EWM25551.1 vs. NCBI_GenBank
Match: gi|1183336377|gb|ORX65448.1| (Mg-dependent DNase [Anaeromyces robustus])

HSP 1 Score: 159.844 bits (403), Expect = 8.231e-44
Identity = 100/299 (33.44%), Postives = 154/299 (51.51%), Query Frame = 0
Query:    1 MFDVHAHLTAQELLP-DLDRLLTEAYSVGVRDIVVVSENVRDAALVLNLPPCQNGVRLHKSLGLHP----------------EHACLKSLSTVLNLIRENHTKLACVGEIGLDFSPHILGHDDAEAVKALQRECMRQQVELAYELDLPVNVHSRGAGHHALSLLRETVSASSVADTLKTTERASSQTRARMYEGRVRAVMHAWDGKAKYAAAAAADSQQSIYFSVPPCASRSPVMIKWIERLPLESLLLETDCPALAAVKGEVNVPRNLQLSLQVIGARKGVGLDIVREITRKNAEELF 282
             FD HAH+ +      +++ ++ +A    V+ I+ V+E   D   VLN+    + + L   +GLHP                  + L  +  VL+LI+E+  ++ C+GE+GLD+SP  L   + E  K +Q++   +Q+ELA EL++P+NVHSR AGH+A+  L E  +A +V                         V+HA+DGK  YA       Q   YFS+PP   RSP   K +  LPL+ +LLETD PAL+  K  +N P N+ +S + I   K + ++ V  IT +NA +LF
Sbjct:    5 FFDCHAHINSPSFSKENIEIIVNKAKEKNVKGIISVAETYEDCLDVLNVAKQYSKIIL-PGIGLHPIQPLVDENGQRLDKGGRSSTLDEVYPVLDLIKEHQKEIVCIGEVGLDYSPQFL--KNVEEEKIIQKQIFEKQIELANELNIPLNVHSRSAGHYAIETLIEK-NAKNV-------------------------VLHAFDGKPGYAQKGL---QAGFYFSIPPSIKRSPQKQKLVNILPLDRILLETDSPALSPEKNTINEPSNVIISCEEIARIKNISIEEVARITNENALKLF 271          
BLAST of EWM25551.1 vs. NCBI_GenBank
Match: gi|1040191607|ref|XP_017203282.1| (PREDICTED: putative deoxyribonuclease TATDN3 isoform X1 [Oryctolagus cuniculus])

HSP 1 Score: 159.458 bits (402), Expect = 1.020e-43
Identity = 103/291 (35.40%), Postives = 149/291 (51.20%), Query Frame = 0
Query:    1 MFDVHAHLTAQELLPDLDRLLTEAYSVGVRDIVVVSENVRDAALVLNLPPCQNGVRLHKSLGLHP---------EHACLKSLSTVLNLIRENHTKLACVGEIGLDFSPHILGHDDAEAVKALQRECMRQQVELAYELDLPVNVHSRGAGHHALSLLRETVSASSVADTLKTTERASSQTRARMYEGRVRAVMHAWDGKAKYAAAAAADSQQSIYFSVPPCASRSPVMIKWIERLPLESLLLETDCPALAAVKGEVNVPRNLQLSLQVIGARKGVGLDIVREITRKNAEELF 282
            + D H HL+A +   DLD +L EA  V V  +V V+E+ R+   ++ L    NG  L   LG+HP             LK L   L +I     +L  +GE+GLDF+P   G D+    K  QR+ + +QV+LA  L+LP+NVHSR AG   +SLLRE                          +G  + ++HA+DG+   A       +   +FS+PP   RS    K +++LPL S+ LETD PAL  VK   N PRN+ +S + I   KG+ ++ V E+T +NA +LF
Sbjct:    8 LVDCHCHLSAPDFDHDLDDVLEEAKKVNVMALVAVAEHSREFEKIMQLSERYNGFVL-PCLGVHPVQELPSEDQRSVTLKDLEVALPIIERYKDRLLAIGEVGLDFTPRFAGTDEQ---KEEQRQVLIKQVQLAKRLNLPLNVHSRSAGRPTVSLLRE--------------------------QGADKVLLHAFDGRPSVAMEGV---RAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGPVKQVRNEPRNISISAEYIAQVKGISVEEVIEVTTQNAMKLF 265          
BLAST of EWM25551.1 vs. NCBI_GenBank
Match: gi|919057813|ref|XP_013410769.1| (PREDICTED: putative deoxyribonuclease TATDN3 isoform X1 [Lingula anatina])

HSP 1 Score: 157.532 bits (397), Expect = 4.035e-43
Identity = 103/292 (35.27%), Postives = 147/292 (50.34%), Query Frame = 0
Query:    1 MFDVHAHLTAQELLPDLDRLLTEAYSVGVRDIVVVSENVRDAALVLNLP--------PCQNGVRLHKSLGLHPEH--ACLKSLSTVLNLIRENHTKLACVGEIGLDFSPHILGHDDAEAVKALQRECMRQQVELAYELDLPVNVHSRGAGHHALSLLRETVSASSVADTLKTTERASSQTRARMYEGRVRAVMHAWDGKAKYAAAAAADSQQSIYFSVPPCASRSPVMIKWIERLPLESLLLETDCPALAAVKGEVNVPRNLQLSLQVIGARKGVGLDIVREITRKNAEELF 282
            + D H HL A+E   D+D ++T+    G+   VVV E+  +   VL+L         PC   + +H   G +P    ACL+ L      I ++H K+  +GE+GLDF+P  +        K  QR    +Q+++A + DLPVNVHSR AG+HA++LL+E                          +G  +A++HA+ G+A  A       Q   YFS PP   RS    K + RLPL+ +LLETD PA    KGE NVP N+ LS + I   K V  + V  IT +NA +LF
Sbjct:    4 VIDAHCHLAAEEFDEDIDDVITKGKEAGIAAAVVVPEHFGEFQKVLDLAERYPDFIAPC---LGVHPVQGSNPNERSACLEDLDEANPFIEKHHDKIVGIGEVGLDFTPWYIKMPQN---KEDQRNVFIKQIDIAKKYDLPVNVHSRSAGNHAITLLKE--------------------------QGVSKALLHAFSGRASVAMEGV---QAGYYFSFPPVIVRSEQKQKLLARLPLDCMLLETDSPACGPEKGERNVPANITLSCEYIAQVKKVDKETVMRITTENALKLF 260          
BLAST of EWM25551.1 vs. NCBI_GenBank
Match: gi|632973556|ref|XP_007903211.1| (PREDICTED: putative deoxyribonuclease TATDN3 [Callorhinchus milii])

HSP 1 Score: 157.147 bits (396), Expect = 8.139e-43
Identity = 100/289 (34.60%), Postives = 148/289 (51.21%), Query Frame = 0
Query:    3 DVHAHLTAQELLPDLDRLLTEAYSVGVRDIVVVSENVRDAALVLNLPPCQNGVRLHKSLGLHP---------EHACLKSLSTVLNLIRENHTKLACVGEIGLDFSPHILGHDDAEAVKALQRECMRQQVELAYELDLPVNVHSRGAGHHALSLLRETVSASSVADTLKTTERASSQTRARMYEGRVRAVMHAWDGKAKYAAAAAADSQQSIYFSVPPCASRSPVMIKWIERLPLESLLLETDCPALAAVKGEVNVPRNLQLSLQVIGARKGVGLDIVREITRKNAEELF 282
            D H HL A +   D+D ++ +A   G+  +V V+E+  +   ++ L    +G  L   LG+HP           A L+ L   L LI +   +L  +GE+GLDF+P     D   A K  QR+ + +Q+E+A +LDLP+NVHSR AG   + LL+E                          +G  R ++HA+DGK   A  A    +   +FS+PP   RS    K +++LPLES+ LETD PAL  VK   N P+N+ +S Q I   KG+ ++ V E+T +NA  LF
Sbjct:   10 DCHCHLAAPDFTTDIDAVIDQAKKAGILALVAVAEHSEEFERLMELSEKYSGFVL-PCLGVHPVQVDPSGEQRSATLQDLEAALPLIEKYKERLLAIGEVGLDFTPRFASTD---AQKNEQRQVLIRQIEIAKQLDLPLNVHSRSAGRPTIKLLKE--------------------------QGAERVLLHAFDGKPSVAMEAV---KAGFFFSIPPSIIRSEQKQKLVKQLPLESMCLETDSPALGPVKQVRNEPKNVLVSCQYIAQVKGIPVEKVMEVTTQNAFRLF 265          
BLAST of EWM25551.1 vs. NCBI_GenBank
Match: gi|661182342|emb|CDH55300.1| (deoxyribonuclease tatdn3 isoform 1 [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 157.532 bits (397), Expect = 8.185e-43
Identity = 105/316 (33.23%), Postives = 151/316 (47.78%), Query Frame = 0
Query:    1 MFDVHAHLTA--------------QELLPDLDRLLTEAYSVGVRDIVVVSENVRDAALVLNLPPCQNGVRLHKSLGLHPEHACLKSLSTVLN---------LIRE--NHTKLACVGEIGLDFSPHIL----GHDDAEAVKALQRECMRQQVELAYELDLPVNVHSRGAGHHALSLLRETVSASSVADTLKTTERASSQTRARMYEGRVRAVMHAWDGKAKYAAAAAADSQQSIYFSVPPCASRSPVMIKWIERLPLESLLLETDCPALAAVKGEVNVPRNLQLSLQVIGARKGVGLDIVREITRKNAEELFGLQAG 287
            M DVHAH+                 E  P LD ++  A +  +  IV VSE++ DA  +  +    +   +  + GLHP           +N         L+++   H K+ C+GE+GLDF+P IL    G+   + +K +QR   ++QV++A E +LPVNVHSR AGHHAL +L E           K T                + +MHA+DG+A Y   A    +   YFS+ P   RSP     ++ +PL +LLLE+D PAL   KG  N P NL ++ + I   K + LD V E T  NA +LF    G
Sbjct:    1 MIDVHAHINYSNFPRDNTVSGAGDDENKPTLDTMINHAKNASIEHIVAVSESIHDAHDIFEIAAASDNF-IWPARGLHPVQCDDNKDERSVNWNDFEMFEPLLQDAIQHKKICCIGEVGLDFTPRILANNSGNQTQDEIKDMQRAIFKRQVQMAMEANLPVNVHSRSAGHHALDILYEC----------KAT----------------KVIMHAFDGRASYTKKAV---EAGYYFSIAPIVVRSPQKQTLVKNVPLSNLLLESDAPALGPEKGVDNEPANLMMAAREIARIKEISLDQVIEATTSNARQLFSCWEG 286          
The following BLAST results are available for this feature:
BLAST of EWM25551.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553187227|ref|XP_005854568.1|0.000e+0100.00dnase domain containing 3 [Nannochloropsis gaditan... [more]
gi|298707840|emb|CBJ30246.1|6.986e-6645.55TatD DNase domain containing 3 [Ectocarpus silicul... [more]
gi|929765655|ref|XP_014157808.1|5.138e-5044.44hypothetical protein SARC_03865 [Sphaeroforma arct... [more]
gi|546305107|ref|XP_005712537.1|1.209e-4737.24unnamed protein product [Chondrus crispus] >gi|515... [more]
gi|1126216582|ref|XP_019642309.1|3.708e-4535.40PREDICTED: putative deoxyribonuclease TATDN3 isofo... [more]
gi|1183336377|gb|ORX65448.1|8.231e-4433.44Mg-dependent DNase [Anaeromyces robustus][more]
gi|1040191607|ref|XP_017203282.1|1.020e-4335.40PREDICTED: putative deoxyribonuclease TATDN3 isofo... [more]
gi|919057813|ref|XP_013410769.1|4.035e-4335.27PREDICTED: putative deoxyribonuclease TATDN3 isofo... [more]
gi|632973556|ref|XP_007903211.1|8.139e-4334.60PREDICTED: putative deoxyribonuclease TATDN3 [Call... [more]
gi|661182342|emb|CDH55300.1|8.185e-4333.23deoxyribonuclease tatdn3 isoform 1 [Lichtheimia co... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5139rna5139Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications