EWM30163.1, cds510 (CDS) Nannochloropsis gaditana

Overview
NameEWM30163.1
Unique Namecds510
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1279808..1279921 -
Alignment locationCM002455.1:1279001..1279588 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30163.1
Productzinc finger matrin-type protein 2
Orig transcript idgnl|cribi|Naga_100096g19.971.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1279808..1279921 -
CM002455.1supercontigCM002455.1:1279001..1279588 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR003604Znf_U1
Homology
BLAST of EWM30163.1 vs. NCBI_GenBank
Match: gi|585112820|gb|EWM30163.1| (zinc finger matrin-type protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 470.7 bits (1210), Expect = 8.622e-168
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query:    1 MADDEQKKKKIPTGALNVERRTWDLEHFEKIAKERLEKEASGDVEKKKPGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKKKAGPRESAIDAYQKKLEKDEAIKAQWKEARKEARINVIQRATKEEESTVEEEGGVDPEMAALMGFGGFK 233
            MADDEQKKKKIPTGALNVERRTWDLEHFEKIAKERLEKEASGDVEKKKPGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKKKAGPRESAIDAYQKKLEKDEAIKAQWKEARKEARINVIQRATKEEESTVEEEGGVDPEMAALMGFGGFK
Sbjct:    1 MADDEQKKKKIPTGALNVERRTWDLEHFEKIAKERLEKEASGDVEKKKPGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKKKAGPRESAIDAYQKKLEKDEAIKAQWKEARKEARINVIQRATKEEESTVEEEGGVDPEMAALMGFGGFK 233          
BLAST of EWM30163.1 vs. NCBI_GenBank
Match: gi|1173929479|gb|OQR82703.1| (hypothetical protein ACHHYP_15603 [Achlya hypogyna])

HSP 1 Score: 157.147 bits (396), Expect = 2.970e-44
Identity = 98/221 (44.34%), Postives = 131/221 (59.28%), Query Frame = 0
Query:   14 GALNVERRTWDLEHFEKIAKERLEKEASGDVEKKKPGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLN-ALKRREDEKKKAGPRESAIDAYQKKLEKDEAIKAQWKEARKEARINVIQRATKEEESTVEEEGGVDPEMAALMGFGGFK 233
            G  NV RRTWD   F +  K  L      + E K    V +REEFQAA  GAAGP GS RA+LK R   + LEE VGK  V+  +    +  GY+C++C+  LKDS++Y+DHINGK+H + LG+SMRVE+VGV+ VKERLN A KR+ D      P   A++AY+KKL + +A     K+ +KEA+          +    E+E      M A+MGFGGF+
Sbjct:    6 GVANVTRRTWDKAFFAQ--KAALRANGLLETESKSTKAVSQREEFQAAPEGAAGPIGSARAFLKARTKQVELEENVGKTVVLKPTDDTAKATGYFCEVCEVTLKDSVSYIDHINGKRHLRRLGFSMRVEKVGVEAVKERLNMASKRKWDPSVAKKP--DAVEAYEKKLAEMDAEANLKKKLKKEAKKQQAAAPAPVDVFATEDEEA----MMAMMGFGGFQ 218          
BLAST of EWM30163.1 vs. NCBI_GenBank
Match: gi|813157223|ref|XP_012201960.1| (hypothetical protein SPRG_07431 [Saprolegnia parasitica CBS 223.65] >gi|641533187|gb|KDO27182.1| hypothetical protein SPRG_07431 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 153.295 bits (386), Expect = 9.040e-43
Identity = 108/244 (44.26%), Postives = 146/244 (59.84%), Query Frame = 0
Query:    1 MADDEQKKKKIPTGALNVERRTWDLEHFEKIAKERLEKEASGDVEK--KKPGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLN-ALKRREDEKKKAGPRESAIDAYQKKLEKDEA--------IKAQWKEARKEARINVIQRATKEEESTVEEEGGVDPEMAALMGFGGFK 233
            MAD  +K      G  NV RRTWD   F + A  R    A+G +E+  K    + +REEFQAA  GAAGP GS RA+LK R   + LEE VGK  VV  +    +  GY+C++C+  LKDS++Y+DHINGK+H + LG+SMRVE+VGV+ VKERLN A KR+ D      P   A++AY+KKL + +A         K   K+ ++EA +NV   AT++EE+           M A+MGFGGF+
Sbjct:    1 MADAPKK------GVANVTRRTWDKAFFAQKAALR----ANGLLEEEVKSTKQISEREEFQAAPDGAAGPIGSSRAFLKARTKQVELEENVGKT-VVLKADETMKGTGYYCEVCEVTLKDSVSYIDHINGKRHLRRLGFSMRVEKVGVEAVKERLNLASKRKWDPTVTKKP--DAVEAYEKKLAEMDAEANLKKKQKKEAKKQQKEEAPVNVF--ATEDEEA-----------MMAMMGFGGFQ 218          
BLAST of EWM30163.1 vs. NCBI_GenBank
Match: gi|567976967|gb|ETL27478.1| (hypothetical protein L916_18977 [Phytophthora parasitica] >gi|568036325|gb|ETM33937.1| hypothetical protein L914_18887 [Phytophthora parasitica] >gi|570314537|gb|ETO62485.1| hypothetical protein F444_19614 [Phytophthora parasitica P1976] >gi|570938313|gb|ETP03570.1| hypothetical protein F441_19483 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 153.68 bits (387), Expect = 1.286e-42
Identity = 84/161 (52.17%), Postives = 107/161 (66.46%), Query Frame = 0
Query:    1 MADDEQKKKKIPTGALNVERRTWDLEHFEKIAKERLEKEASGDVEKKKPGFVRK--REEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRR 159
            MAD    +K    G  NV R+TWD  H+EK+A+ R E    G +EK++   V K  +EEFQAA  GAAGP GS RA+LK R   + LE  VG ++VV  S    + GGY+C++C+C LKDS+AYLDHINGKKH + LGYSMRVER  VD+VK RL +  +R
Sbjct:    1 MADKSGSRK--GAGVANVTRQTWDRAHYEKLAQLRAE----GKLEKEETKKVIKSTKEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVK-SDDVSKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQSASKR 154          
BLAST of EWM30163.1 vs. NCBI_GenBank
Match: gi|567948320|gb|ETK74069.1| (hypothetical protein L915_19076 [Phytophthora parasitica])

HSP 1 Score: 153.68 bits (387), Expect = 1.328e-42
Identity = 84/161 (52.17%), Postives = 107/161 (66.46%), Query Frame = 0
Query:    1 MADDEQKKKKIPTGALNVERRTWDLEHFEKIAKERLEKEASGDVEKKKPGFVRK--REEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRR 159
            MAD    +K    G  NV R+TWD  H+EK+A+ R E    G +EK++   V K  +EEFQAA  GAAGP GS RA+LK R   + LE  VG ++VV  S    + GGY+C++C+C LKDS+AYLDHINGKKH + LGYSMRVER  VD+VK RL +  +R
Sbjct:    1 MADKSGSRK--GAGVANVTRQTWDRAHYEKLAQLRAE----GKLEKEETKKVIKSTKEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVK-SDDVSKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQSASKR 154          
BLAST of EWM30163.1 vs. NCBI_GenBank
Match: gi|570968625|gb|ETP31744.1| (hypothetical protein F442_19433 [Phytophthora parasitica P10297])

HSP 1 Score: 153.295 bits (386), Expect = 1.512e-42
Identity = 84/161 (52.17%), Postives = 107/161 (66.46%), Query Frame = 0
Query:    1 MADDEQKKKKIPTGALNVERRTWDLEHFEKIAKERLEKEASGDVEKKKPGFVRK--REEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRR 159
            MAD    +K    G  NV R+TWD  H+EK+A+ R E    G +EK++   V K  +EEFQAA  GAAGP GS RA+LK R   + LE  VG ++VV  S    + GGY+C++C+C LKDS+AYLDHINGKKH + LGYSMRVER  VD+VK RL +  +R
Sbjct:    1 MADKSGTRK--GAGVANVTRQTWDRAHYEKLAQLRAE----GKLEKEETKKVIKSTKEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVK-SDDVSKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQSASKR 154          
BLAST of EWM30163.1 vs. NCBI_GenBank
Match: gi|568006489|gb|ETL80745.1| (hypothetical protein L917_18797 [Phytophthora parasitica] >gi|970647985|gb|KUF87651.1| Zinc finger matrin-type protein 2 [Phytophthora nicotianae] >gi|970665008|gb|KUG01779.1| Zinc finger matrin-type protein 2 [Phytophthora nicotianae])

HSP 1 Score: 153.295 bits (386), Expect = 1.666e-42
Identity = 84/161 (52.17%), Postives = 107/161 (66.46%), Query Frame = 0
Query:    1 MADDEQKKKKIPTGALNVERRTWDLEHFEKIAKERLEKEASGDVEKKKPGFVRK--REEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRR 159
            MAD    +K    G  NV R+TWD  H+EK+A+ R E    G +EK++   V K  +EEFQAA  GAAGP GS RA+LK R   + LE  VG ++VV  S    + GGY+C++C+C LKDS+AYLDHINGKKH + LGYSMRVER  VD+VK RL +  +R
Sbjct:    1 MADKSGSRK--GAGVANVTRQTWDRAHYEKLAQLRAE----GKLEKEETKKVIKSTKEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVK-SDDLSKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQSASKR 154          
BLAST of EWM30163.1 vs. NCBI_GenBank
Match: gi|675209519|ref|XP_008913644.1| (hypothetical protein PPTG_17522 [Phytophthora parasitica INRA-310] >gi|568086196|gb|ETN01089.1| hypothetical protein PPTG_17522 [Phytophthora parasitica INRA-310])

HSP 1 Score: 152.91 bits (385), Expect = 2.023e-42
Identity = 83/158 (52.53%), Postives = 107/158 (67.72%), Query Frame = 0
Query:    4 DEQKKKKIPTGALNVERRTWDLEHFEKIAKERLEKEASGDVEKKKPGFVRK--REEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRR 159
            D+   +K P G  NV R+TWD  H+EK+A+ R E    G +EK++   V K  +EEFQAA  GAAGP GS RA+LK R   + LE  VG ++VV  S    + GGY+C++C+C LKDS+AYLDHINGKKH + LGYSMRVER  VD+VK RL +  +R
Sbjct:    3 DKSGSRKGP-GVANVTRQTWDRAHYEKLAQLRAE----GKLEKEETKKVIKSTKEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVK-SDDVSKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQSASKR 154          
BLAST of EWM30163.1 vs. NCBI_GenBank
Match: gi|953492098|emb|CEG45348.1| (zinc finger matrin-type protein 2 [Plasmopara halstedii])

HSP 1 Score: 153.68 bits (387), Expect = 4.705e-42
Identity = 93/189 (49.21%), Postives = 121/189 (64.02%), Query Frame = 0
Query:   14 GALNVERRTWDLEHFEKIAKERLEKEASGDVEKKKPGFV--RKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERL-NALKRREDEKKKAGPRESAIDAYQKKLEKDE----AIKAQWKEARK 195
            G  NV R+TWD  H+EK+A+ R E    G VEK+    V    +EEFQ A+  AAGP GS RA+LK R A + LE  VG ++VV  S    +  GY+C++C+C LKDS+AYLDHINGKKH + LGYSMRVER  VD+VK+RL +A KR+ D       +  A++ Y+KKL+  E     +K Q KE RK
Sbjct:   65 GVSNVVRQTWDRAHYEKLAQLRAE----GGVEKETTKKVIHSSKEEFQTADESAAGPAGSARAFLKARTAKMSLETSVGTVKVVK-SDELSKNSGYYCEVCECSLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKDRLQSAAKRKWD--PLMTKKLDAMEEYEKKLKAAEEAEICLKRQKKEQRK 246          
BLAST of EWM30163.1 vs. NCBI_GenBank
Match: gi|566010782|gb|ETI33693.1| (hypothetical protein F443_19654 [Phytophthora parasitica P1569])

HSP 1 Score: 151.754 bits (382), Expect = 6.076e-42
Identity = 84/161 (52.17%), Postives = 107/161 (66.46%), Query Frame = 0
Query:    1 MADDEQKKKKIPTGALNVERRTWDLEHFEKIAKERLEKEASGDVEKKKPGFVRK--REEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRR 159
            MAD    +K    G  NV R+TWD  H+EK+A+ R E    G +EK++   V K  +EEFQAA  GAAGP GS RA+LK R   + LE  VG ++VV  S    + GGY+C++C+C LKDS+AYLDHINGKKH + LGYSMRVER  VD+VK RL +  +R
Sbjct:    1 MADKSGTRK--GAGVANVTRQTWDRAHYEKLAQLRAE----GKLEKEETKKVIKSTKEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVK-SDDLSKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKIRLQSASKR 154          
The following BLAST results are available for this feature:
BLAST of EWM30163.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112820|gb|EWM30163.1|8.622e-168100.00zinc finger matrin-type protein 2 [Nannochloropsis... [more]
gi|1173929479|gb|OQR82703.1|2.970e-4444.34hypothetical protein ACHHYP_15603 [Achlya hypogyna... [more]
gi|813157223|ref|XP_012201960.1|9.040e-4344.26hypothetical protein SPRG_07431 [Saprolegnia paras... [more]
gi|567976967|gb|ETL27478.1|1.286e-4252.17hypothetical protein L916_18977 [Phytophthora para... [more]
gi|567948320|gb|ETK74069.1|1.328e-4252.17hypothetical protein L915_19076 [Phytophthora para... [more]
gi|570968625|gb|ETP31744.1|1.512e-4252.17hypothetical protein F442_19433 [Phytophthora para... [more]
gi|568006489|gb|ETL80745.1|1.666e-4252.17hypothetical protein L917_18797 [Phytophthora para... [more]
gi|675209519|ref|XP_008913644.1|2.023e-4252.53hypothetical protein PPTG_17522 [Phytophthora para... [more]
gi|953492098|emb|CEG45348.1|4.705e-4249.21zinc finger matrin-type protein 2 [Plasmopara hals... [more]
gi|566010782|gb|ETI33693.1|6.076e-4252.17hypothetical protein F443_19654 [Phytophthora para... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna510rna510Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications