EWM30175.1, cds509 (CDS) Nannochloropsis gaditana

Overview
NameEWM30175.1
Unique Namecds509
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1278454..1278462 -
Alignment locationCM002455.1:1278061..1278324 -
Alignment locationCM002455.1:1277868..1277943 -
Alignment locationCM002455.1:1277515..1277654 -
Alignment locationCM002455.1:1277166..1277450 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30175.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100096g18.983.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1278454..1278462 -
CM002455.1supercontigCM002455.1:1278061..1278324 -
CM002455.1supercontigCM002455.1:1277868..1277943 -
CM002455.1supercontigCM002455.1:1277515..1277654 -
CM002455.1supercontigCM002455.1:1277166..1277450 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006139nucleobase-containing compound metabolic process
GO:0016043cellular component organization
GO:0019725cellular homeostasis
GO:0000387spliceosomal snRNP assembly
GO:0006884cell volume homeostasis
GO:0006821chloride transport
Vocabulary: Cellular Component
TermDefinition
GO:0034709methylosome
GO:0034715pICln-Sm protein complex
GO:0005886plasma membrane
GO:0005829cytosol
Vocabulary: INTERPRO
TermDefinition
IPR003521ICln
Homology
BLAST of EWM30175.1 vs. NCBI_GenBank
Match: gi|585112832|gb|EWM30175.1| (hypothetical protein Naga_100096g18 [Nannochloropsis gaditana])

HSP 1 Score: 523.087 bits (1346), Expect = 0.000e+0
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0
Query:    1 MEQGDEELLFELVDVEMSYGSSTGPSERRGLLQITSKRLRWKARREEDEGTNLTADTDLGEELYEAEIPCITLHAISKDPSSFPKPCLYCQISEGGEDEDEDASKEVYFVPEDPESLGPLFEALSRAALMNPDPPEAGENEGDDELIFDQTSTDGASGASEEQYEAIKEMCRLCGFSHGQHRCIDLSSTVRLWVYAQGRMLAHLEGLLTFSPNLVAASGQFDDVDEAEGAASGGGDQGQDGGRGEGGMNGHGADTTQ 257
            MEQGDEELLFELVDVEMSYGSSTGPSERRGLLQITSKRLRWKARREEDEGTNLTADTDLGEELYEAEIPCITLHAISKDPSSFPKPCLYCQISEGGEDEDEDASKEVYFVPEDPESLGPLFEALSRAALMNPDPPEAGENEGDDELIFDQTSTDGASGASEEQYEAIKEMCRLCGFSHGQHRCIDLSSTVRLWVYAQGRMLAHLEGLLTFSPNLVAASGQFDDVDEAEGAASGGGDQGQDGGRGEGGMNGHGADTTQ
Sbjct:    1 MEQGDEELLFELVDVEMSYGSSTGPSERRGLLQITSKRLRWKARREEDEGTNLTADTDLGEELYEAEIPCITLHAISKDPSSFPKPCLYCQISEGGEDEDEDASKEVYFVPEDPESLGPLFEALSRAALMNPDPPEAGENEGDDELIFDQTSTDGASGASEEQYEAIKEMCRLCGFSHGQHRCIDLSSTVRLWVYAQGRMLAHLEGLLTFSPNLVAASGQFDDVDEAEGAASGGGDQGQDGGRGEGGMNGHGADTTQ 257          
BLAST of EWM30175.1 vs. NCBI_GenBank
Match: gi|298713623|emb|CBJ33675.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 88.9669 bits (219), Expect = 8.370e-18
Identity = 75/249 (30.12%), Postives = 110/249 (44.18%), Query Frame = 0
Query:    6 EELLFELVDVEMSYGSSTGPSERRGLLQITSKRLRWKARREEDEGTNLTADTDLGEELYEAEIPCITLHAISKDPSSFPKPCLYCQISEGGEDEDEDASKEVYFVPEDPE--SLGPLFEALSRAALMNPDPPEAGENEGDDELIFDQTSTDGASGASEEQYEAIKEMCRLCGFSHGQHRCIDLSSTVRLWVYAQGRMLAHLEGLLTFSPNLVAASGQFDDVDEAEGAASGGGDQGQDGGRGEGGMNGHG 252
            EE+L    +V +++   +   E  G L +T+ R+ W +  ++ +              ++ ++  I LHAISKDP +FP PC+YCQ++     E+ED  KE +F P D E  +L  LFEA S+AA +NP+P                    G  GA   + E +        F HG     +           Q R+LAHL+ +L     + A +GQFDD D       G GD     G    G NGH 
Sbjct:   30 EEVLLRNEEVTLAFSPES--PEGLGSLTVTTTRVVWLSSEDQSKA-------------FDFDVAYICLHAISKDPGTFPNPCIYCQLAV----EEEDVLKEAFFAPSDGEAATLQALFEAFSKAAELNPEP--------------------GDEGAGAGEEEGLGGGAGGLVFDHGSALSAE-----------QERVLAHLDSVLVVPEGMEAVNGQFDDADVP--PEDGEGDLANGHG---AGANGHA 223          
BLAST of EWM30175.1 vs. NCBI_GenBank
Match: gi|325187437|emb|CCA21975.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 88.5817 bits (218), Expect = 9.135e-18
Identity = 60/154 (38.96%), Postives = 86/154 (55.84%), Query Frame = 0
Query:   14 DVEMSYG-SSTGPSE----RRGLLQITSKRLRWKARREEDEGTNLTADTDLGEELYEAEIPCITLHAISKDPSSFPKPCLYCQISEGGEDEDEDASKEVYFVPEDPESLGPLFEALSRAALMNPDPPEAGENEGDD-ELIFDQTSTDGASGASE 161
            DVE+S    S+ P +     +G + +T++R  W         +N ++DT  G   Y  +I CITLHAIS+DP++FP PCLYCQI      E EDA+ EV FVP   E L  L+ A S++A MNPD  +  E  G++   I+D+      + A+E
Sbjct:   38 DVELSINLFSSKPVDESVLNKGKVYVTTRRAIWI--------SNTSSDTSRG---YSWDIKCITLHAISRDPAAFPVPCLYCQI------EAEDAT-EVRFVPSQSEDLTRLYLAFSKSAEMNPDEEDVPEGAGEEGNWIYDEDEIRQDAQAAE 173          
BLAST of EWM30175.1 vs. NCBI_GenBank
Match: gi|635365521|emb|CCI46131.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 85.1149 bits (209), Expect = 2.171e-16
Identity = 57/144 (39.58%), Postives = 76/144 (52.78%), Query Frame = 0
Query:   30 GLLQITSKRLRWKARREEDEGTNLTADTDLGEELYEAEIPCITLHAISKDPSSFPKPCLYCQISEGGEDEDEDASKEVYFVPEDPESLGPLFEALSRAALMNP---DPPEAGENEGDDELIFDQTSTDGASGASEEQYEAIKEM 170
            G + +TS+R  W A        N + D   G   Y  +I CITLHAIS+DP++FP PCLYCQI      E E+A+ E+ FVP   E L  L+ A S++A MNP   D PE    EGD     D+   D  +      Y++I E+
Sbjct:   59 GKVYVTSRRAVWIA--------NTSTDAFRG---YSWDIKCITLHAISRDPTAFPVPCLYCQI------EAENAT-EMRFVPSQSEDLTRLYLAFSKSAEMNPDEEDVPEGAGEEGDWIYDEDEILQDAQAAEMAAHYDSILEV 184          
BLAST of EWM30175.1 vs. NCBI_GenBank
Match: gi|953486006|emb|CEG50184.1| (chloride conductance regulatory protein icln-like [Plasmopara halstedii])

HSP 1 Score: 81.6481 bits (200), Expect = 3.290e-15
Identity = 48/109 (44.04%), Postives = 59/109 (54.13%), Query Frame = 0
Query:   24 GPSERRGLLQITSKRLRWKARREEDEGTNLTADTDLGEELYEAEIPCITLHAISKDPSSFPKPCLYCQISEGGEDEDEDASKEVYFVPEDPESLGPLFEALSRAALMNP 132
             PS   G L +T+ R+ W     +         T +G   Y  E+  ITLHAIS+DP +FPKPCLYCQIS       ED   EV FVP D   L  LF+A S++A MNP
Sbjct:   54 APSGLVGTLFVTTSRVIWLGDAMK---------THVG---YAWEMNTITLHAISRDPLAFPKPCLYCQISI------EDVLSEVRFVPTDDNILQELFKAFSKSAEMNP 144          
BLAST of EWM30175.1 vs. NCBI_GenBank
Match: gi|224120234|ref|XP_002318279.1| (nucleotide-sensitive chloride conductance regulator family protein [Populus trichocarpa] >gi|222858952|gb|EEE96499.1| nucleotide-sensitive chloride conductance regulator family protein [Populus trichocarpa])

HSP 1 Score: 81.6481 bits (200), Expect = 4.740e-15
Identity = 65/195 (33.33%), Postives = 92/195 (47.18%), Query Frame = 0
Query:   10 FELVDVEMSYGSSTGPSERRGLLQITSKRLRWKARREEDEGTNLTADTDLGEELYEAEIPCITLHAISKDPSSFPKPCLYCQISEGGEDEDE------------DASK--EVYFVPEDPESLGPLFEALSRAALMNPDPPEAGENEGDDELIFDQTSTDGASGASEEQYEAIKEMCRLCGFSHGQHRCIDLSSTV 190
            F L+  E+S     G  E  G L I++K++ W             +D D G + Y  +   I+LHA+S+DP ++P PC+Y QI E GEDEDE            D SK  E+  VP DP  L  LF+     A +NP+P E  E E +     DQ S D  +   + ++   +      G S+G H   DL+ TV
Sbjct:   29 FMLMCREVSIVIGNGSPESPGTLYISTKKVVW------------LSDVD-GTKGYAVDFLSISLHAVSRDPEAYPSPCIYTQI-ETGEDEDESEGSDSECSDALDLSKVTEMRLVPSDPSQLDTLFQVFCECAELNPEPVEDNEEEHNWIFSADQLS-DETAEVEDSEWNFSQNPTSSIGHSNGDH---DLARTV 205          
BLAST of EWM30175.1 vs. NCBI_GenBank
Match: gi|743856664|ref|XP_011029973.1| (PREDICTED: chloride conductance regulatory protein ICln-like [Populus euphratica])

HSP 1 Score: 81.2629 bits (199), Expect = 7.584e-15
Identity = 63/199 (31.66%), Postives = 93/199 (46.73%), Query Frame = 0
Query:    6 EELLFELVDVEMSYGSSTGPSERRGLLQITSKRLRWKARREEDEGTNLTADTDLGEELYEAEIPCITLHAISKDPSSFPKPCLYCQISEGGEDEDE------------DASK--EVYFVPEDPESLGPLFEALSRAALMNPDPPEAGENEGDDELIFDQTSTDGASGASEEQYEAIKEMCRLCGFSHGQHRCIDLSSTV 190
            EEL+    +V +  G+  G  E  G L I++K++ W +  +  +G             Y  +   I+LHA+S+DP ++P PC+Y QI E GEDEDE            D SK  E+  VP DP  L  LF+     A +NP+P E  E E +     DQ + D  +   + ++   +      G S+G H   DL  TV
Sbjct:   27 EELMLMFREVSIVIGN--GSPESPGTLYISTKKVLWLSDVDRTKG-------------YAVDFLSISLHAVSRDPEAYPSPCIYTQI-ETGEDEDESEGSDSECSDALDLSKVTEMRLVPSDPSQLDTLFQVFCECAELNPEPVEDNEEEHNWIFSADQLA-DETAEVEDSEWNFSQNPTSSIGHSNGDH---DLVRTV 205          
BLAST of EWM30175.1 vs. NCBI_GenBank
Match: gi|970645224|gb|KUF85755.1| (Chloride conductance regulatory protein ICln [Phytophthora nicotianae] >gi|970653914|gb|KUF92308.1| Chloride conductance regulatory protein ICln [Phytophthora nicotianae])

HSP 1 Score: 80.4925 bits (197), Expect = 9.296e-15
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 0
Query:   30 GLLQITSKRLRWKARREEDEGTNLTADTDLGEELYEAEIPCITLHAISKDPSSFPKPCLYCQISEGGEDEDEDASKEVYFVPEDPESLGPLFEALSRAALMNP 132
            G L +T+ R+ W               T +G   Y  E+  +TLHAIS+DP++FPKPCLYCQIS      ++D S EV FVP D ++L  +F+A S++A MNP
Sbjct:   62 GALFVTTSRVIWLGA---------AVSTHVG---YAWEMSSVTLHAISRDPAAFPKPCLYCQIS------NQDVS-EVRFVPTDDKTLQEVFDAFSKSAEMNP 145          
BLAST of EWM30175.1 vs. NCBI_GenBank
Match: gi|675175853|ref|XP_008896811.1| (hypothetical protein PPTG_05081 [Phytophthora parasitica INRA-310] >gi|566011644|gb|ETI34555.1| hypothetical protein F443_18960 [Phytophthora parasitica P1569] >gi|567949174|gb|ETK74906.1| hypothetical protein L915_18386 [Phytophthora parasitica] >gi|567977834|gb|ETL28330.1| hypothetical protein L916_18289 [Phytophthora parasitica] >gi|568007340|gb|ETL81579.1| hypothetical protein L917_18109 [Phytophthora parasitica] >gi|568037194|gb|ETM34784.1| hypothetical protein L914_18195 [Phytophthora parasitica] >gi|568102558|gb|ETN17229.1| hypothetical protein PPTG_05081 [Phytophthora parasitica INRA-310] >gi|570315408|gb|ETO63356.1| hypothetical protein F444_18913 [Phytophthora parasitica P1976] >gi|570939192|gb|ETP04449.1| hypothetical protein F441_18771 [Phytophthora parasitica CJ01A1] >gi|570969461|gb|ETP32580.1| hypothetical protein F442_18741 [Phytophthora parasitica P10297])

HSP 1 Score: 79.7221 bits (195), Expect = 1.522e-14
Identity = 44/103 (42.72%), Postives = 62/103 (60.19%), Query Frame = 0
Query:   30 GLLQITSKRLRWKARREEDEGTNLTADTDLGEELYEAEIPCITLHAISKDPSSFPKPCLYCQISEGGEDEDEDASKEVYFVPEDPESLGPLFEALSRAALMNP 132
            G L +T+ R+ W        GT++          Y  E+  +TLHAIS+DP++FPKPCLYCQIS      ++D S EV FVP D ++L  +F+A S++A MNP
Sbjct:   62 GALFVTTSRVIWLGAAV---GTHVG---------YAWEMSSVTLHAISRDPAAFPKPCLYCQIS------NQDVS-EVRFVPTDDKTLQEVFDAFSKSAEMNP 145          
BLAST of EWM30175.1 vs. NCBI_GenBank
Match: gi|301119097|ref|XP_002907276.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262105788|gb|EEY63840.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 78.5666 bits (192), Expect = 4.246e-14
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 0
Query:   30 GLLQITSKRLRWKARREEDEGTNLTADTDLGEEL-YEAEIPCITLHAISKDPSSFPKPCLYCQISEGGEDEDEDASKEVYFVPEDPESLGPLFEALSRAALMNP 132
            G L +T+ R+ W                 +G +L Y  E+  +TLHAIS+DP++F KPCLYCQIS      ++D S E+ FVP D ++L  LF+A S++A MNP
Sbjct:   62 GALFVTTSRVLWLGAA-------------MGTQLGYAWEMSSVTLHAISRDPAAFSKPCLYCQIS------NQDVS-EIRFVPVDDKTLQELFDAFSKSAEMNP 145          
The following BLAST results are available for this feature:
BLAST of EWM30175.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112832|gb|EWM30175.1|0.000e+0100.00hypothetical protein Naga_100096g18 [Nannochlorops... [more]
gi|298713623|emb|CBJ33675.1|8.370e-1830.12conserved unknown protein [Ectocarpus siliculosus][more]
gi|325187437|emb|CCA21975.1|9.135e-1838.96conserved hypothetical protein [Albugo laibachii N... [more]
gi|635365521|emb|CCI46131.1|2.171e-1639.58unnamed protein product [Albugo candida][more]
gi|953486006|emb|CEG50184.1|3.290e-1544.04chloride conductance regulatory protein icln-like ... [more]
gi|224120234|ref|XP_002318279.1|4.740e-1533.33nucleotide-sensitive chloride conductance regulato... [more]
gi|743856664|ref|XP_011029973.1|7.584e-1531.66PREDICTED: chloride conductance regulatory protein... [more]
gi|970645224|gb|KUF85755.1|9.296e-1542.72Chloride conductance regulatory protein ICln [Phyt... [more]
gi|675175853|ref|XP_008896811.1|1.522e-1442.72hypothetical protein PPTG_05081 [Phytophthora para... [more]
gi|301119097|ref|XP_002907276.1|4.246e-1441.35conserved hypothetical protein [Phytophthora infes... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna509rna509Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications