EWM25590.1, cds5082 (CDS) Nannochloropsis gaditana

Overview
NameEWM25590.1
Unique Namecds5082
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:103683..103870 -
Alignment locationCM002465.1:103428..103552 -
Alignment locationCM002465.1:103274..103320 -
Alignment locationCM002465.1:103067..103177 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25590.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101029g2.3278.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:103683..103870 -
CM002465.1supercontigCM002465.1:103428..103552 -
CM002465.1supercontigCM002465.1:103274..103320 -
CM002465.1supercontigCM002465.1:103067..103177 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM25590.1 vs. NCBI_GenBank
Match: gi|585107382|gb|EWM25590.1| (hypothetical protein Naga_101029g2 [Nannochloropsis gaditana])

HSP 1 Score: 307.375 bits (786), Expect = 9.744e-106
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0 
Query:    1 MPSLLPLSCLMLLSLLGSCAFFLPARPSSSLISRSLFITSSPSLPTSSSALHARKKRPKEQDWMEVLAESGGMEEKEEGIWPAAPAPWEASFVGTSLDPLMLDPDDFDEEELGMMAMLNQEEEEEDLPVLEVEQVLDLSLGNMEYREDEVCKSITV 156
            MPSLLPLSCLMLLSLLGSCAFFLPARPSSSLISRSLFITSSPSLPTSSSALHARKKRPKEQDWMEVLAESGGMEEKEEGIWPAAPAPWEASFVGTSLDPLMLDPDDFDEEELGMMAMLNQEEEEEDLPVLEVEQVLDLSLGNMEYREDEVCKSITV
Sbjct:    1 MPSLLPLSCLMLLSLLGSCAFFLPARPSSSLISRSLFITSSPSLPTSSSALHARKKRPKEQDWMEVLAESGGMEEKEEGIWPAAPAPWEASFVGTSLDPLMLDPDDFDEEELGMMAMLNQEEEEEDLPVLEVEQVLDLSLGNMEYREDEVCKSITV 156
[Close]
BLAST of EWM25590.1 vs. NCBI_GenBank
Match: gi|585107381|gb|EWM25589.1| (hypothetical protein Naga_101029g2 [Nannochloropsis gaditana])

HSP 1 Score: 295.049 bits (754), Expect = 2.579e-100
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 
Query:    1 MPSLLPLSCLMLLSLLGSCAFFLPARPSSSLISRSLFITSSPSLPTSSSALHARKKRPKEQDWMEVLAESGGMEEKEEGIWPAAPAPWEASFVGTSLDPLMLDPDDFDEEELGMMAMLNQEEEEEDLPVLEVEQVLDLSLGNMEYREDE 149
            MPSLLPLSCLMLLSLLGSCAFFLPARPSSSLISRSLFITSSPSLPTSSSALHARKKRPKEQDWMEVLAESGGMEEKEEGIWPAAPAPWEASFVGTSLDPLMLDPDDFDEEELGMMAMLNQEEEEEDLPVLEVEQVLDLSLGNMEYREDE
Sbjct:    1 MPSLLPLSCLMLLSLLGSCAFFLPARPSSSLISRSLFITSSPSLPTSSSALHARKKRPKEQDWMEVLAESGGMEEKEEGIWPAAPAPWEASFVGTSLDPLMLDPDDFDEEELGMMAMLNQEEEEEDLPVLEVEQVLDLSLGNMEYREDE 149
The following BLAST results are available for this feature:
BLAST of EWM25590.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585107382|gb|EWM25590.1|9.744e-106100.00hypothetical protein Naga_101029g2 [Nannochloropsi... [more]
gi|585107381|gb|EWM25589.1|2.579e-100100.00hypothetical protein Naga_101029g2 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5094rna5094Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications