EWM25594.1, cds5079 (CDS) Nannochloropsis gaditana

Overview
NameEWM25594.1
Unique Namecds5079
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:100008..100418 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25594.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100813g1.3595.mrna
GbkeyCDS
End range.
End range100418
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:100008..100418 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM25594.1 vs. NCBI_GenBank
Match: gi|585107390|gb|EWM25594.1| (hypothetical protein Naga_100813g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 267.7 bits (683), Expect = 1.428e-90
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 
Query:    1 GNLREGGGGRGQEKGRKRCVSRGQGRRCRVSLPPGAFLRLWAVPNDLSSLSGVPSFPLLFFHLPCRFPLSRAEVSLFNVDENSCNSFAFCFFLLLLPPSLLPSLRTWPSACSRIGWTVGHSRTSKWRKGKRSTGGP 136
            GNLREGGGGRGQEKGRKRCVSRGQGRRCRVSLPPGAFLRLWAVPNDLSSLSGVPSFPLLFFHLPCRFPLSRAEVSLFNVDENSCNSFAFCFFLLLLPPSLLPSLRTWPSACSRIGWTVGHSRTSKWRKGKRSTGGP
Sbjct:    1 GNLREGGGGRGQEKGRKRCVSRGQGRRCRVSLPPGAFLRLWAVPNDLSSLSGVPSFPLLFFHLPCRFPLSRAEVSLFNVDENSCNSFAFCFFLLLLPPSLLPSLRTWPSACSRIGWTVGHSRTSKWRKGKRSTGGP 136
The following BLAST results are available for this feature:
BLAST of EWM25594.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585107390|gb|EWM25594.1|1.428e-90100.00hypothetical protein Naga_100813g1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5091rna5091Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications